View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20752_high_1 (Length: 410)
Name: NF20752_high_1
Description: NF20752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20752_high_1 |
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| [»] scaffold0045 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-159; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 23 - 400
Target Start/End: Original strand, 42550053 - 42550427
Alignment:
| Q |
23 |
cacacataggatatgagactccgttgctgggagaatgaattctttcaagtgggattttctccatttttctcaattgttacaaagaaccgaagaaaatatc |
122 |
Q |
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| T |
42550053 |
cacacattggatatgagactccgttgctgggagaatgaattctttcaagtgggattttctccatttttctcaattgttataaagaaccgaagaaaatatc |
42550152 |
T |
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| Q |
123 |
ttaattattcattgnnnnnnnnnnnnnnnncacttacttctaccttcatttcaatcttatcatggttacg----gtttttattctaaacgcttcaatttt |
218 |
Q |
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| T |
42550153 |
ttaattattcatt-------aaaaaaaaaacacttaattctaccttcatttcaatcttatcatggttacgttttttttttattctaaacgcttcaatttt |
42550245 |
T |
|
| Q |
219 |
aacacctttggttagaacatcaacaatctgattcacacttttgtaatcttccaacacatcttgatacccaaatatgacattcatttgcttgcaccaatta |
318 |
Q |
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| T |
42550246 |
aacacctttggttagaacatcaacaatctgattcacacttttgtaatcttccaacacatcttgatacccaaatatgacattcatttgcttgcaccaatta |
42550345 |
T |
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| Q |
319 |
tcataattcttcccatcatgaatgagaagatttgcaggaaagtttccatttggatgagacgtagttgcactatatccctatg |
400 |
Q |
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| T |
42550346 |
ccataattcttcccatcatgaatgagaagatttgcaggaaagtttccatttggatgagacgtcgttgcactatatccctatg |
42550427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 18373022 - 18373070
Alignment:
| Q |
55 |
gaatgaattctttcaagtgggattttctccatttttctcaattgttaca |
103 |
Q |
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| T |
18373022 |
gaatgaattctttcaagtggaattttttccatttttctcaattgttaca |
18373070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 203 - 273
Target Start/End: Original strand, 15038919 - 15038989
Alignment:
| Q |
203 |
taaacgcttcaattttaacacctttggttagaacatcaacaatctgattcacacttttgtaatcttccaac |
273 |
Q |
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| T |
15038919 |
taaacacttcaatcttaacacctttggttagaacatctgcaatctgattctcacttttggaatgttccaac |
15038989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 30364394 - 30364346
Alignment:
| Q |
55 |
gaatgaattctttcaagtgggattttctccatttttctcaattgttaca |
103 |
Q |
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| T |
30364394 |
gaatggattctctcaagtgaaattttctccatttttctcaattgttaca |
30364346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 103
Target Start/End: Complemental strand, 6734492 - 6734443
Alignment:
| Q |
54 |
agaatgaattctttcaagtgggattttctccatttttctcaattgttaca |
103 |
Q |
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| T |
6734492 |
agaatgtattcttttaagtggaattttctccatttttttcaattcttaca |
6734443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 272 - 330
Target Start/End: Original strand, 22583050 - 22583108
Alignment:
| Q |
272 |
acacatcttgatacccaaatatgacattcatttgcttgcaccaattatcataattcttc |
330 |
Q |
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| T |
22583050 |
acacttcttgatatccaaatacaactttcatatgcttgcaccaactatcataattcttc |
22583108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 318 - 363
Target Start/End: Complemental strand, 29941 - 29896
Alignment:
| Q |
318 |
atcataattcttcccatcatgaatgagaagatttgcaggaaagttt |
363 |
Q |
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| T |
29941 |
atcataattcttcccatcaagaattataagatttgcagggaagttt |
29896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 15390390 - 15390342
Alignment:
| Q |
55 |
gaatgaattctttcaagtgggattttctccatttttctcaattgttaca |
103 |
Q |
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| T |
15390390 |
gaatggattctctcaagtataattttctccatttttctcaattgttaca |
15390342 |
T |
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