View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20752_high_3 (Length: 236)
Name: NF20752_high_3
Description: NF20752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20752_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 113; Significance: 2e-57; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 34066195 - 34066362
Alignment:
| Q |
1 |
taaagctaacagctttgttttaattgttcttcattgggattaggctatatttatctaagttcccaagttttttactcattaaaccataccaaaacgaact |
100 |
Q |
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| T |
34066195 |
taaagctaacagctttgttttaattgttcttcattgggattaagctatatttatctaagttcccaagttttttactcatcaaaccataccaaaacgaact |
34066294 |
T |
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| Q |
101 |
t--------------ttcagaaatttctgtacttcatatttttccaaatcgaactctcatatatattc |
154 |
Q |
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| T |
34066295 |
tagaggactagtatattcagaaatttctgtacttcatatttttccaaatcgaactctcatatatattc |
34066362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 179 - 221
Target Start/End: Original strand, 34066387 - 34066429
Alignment:
| Q |
179 |
ataaaacagataaaaagtaatattggattcacacccatctaat |
221 |
Q |
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| T |
34066387 |
ataaaacagataaaaagtaatattggattcacacccatctaat |
34066429 |
T |
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