View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20753_high_3 (Length: 435)
Name: NF20753_high_3
Description: NF20753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20753_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 163 - 418
Target Start/End: Complemental strand, 31427974 - 31427722
Alignment:
| Q |
163 |
tcacatatgatacttctcctcggtcacaatatgtactagactactagttctcaccggacaaatcacttaaaaaattcaaattggaagctgacactctata |
262 |
Q |
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| T |
31427974 |
tcacatatgatacttctcctcggtcacaatatgtactagactactagttctcaccggacaaatcacttaaa---ttcaaattggaagctgacactctata |
31427878 |
T |
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| Q |
263 |
tttccttcagtgctctctataacgaatggcattggtttgatatagattgaattgaaggatcattttggcagcattaagattgaacatactggtattaaca |
362 |
Q |
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| T |
31427877 |
tttccttcagtgctctctataacgaatggcattggtttgatatagattgaattgaaggatcattttggcagcattaagattgaacatactggtattaaca |
31427778 |
T |
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| Q |
363 |
cattaagattcaccatattttggatgggaattcctgtgttttcacatatctattaa |
418 |
Q |
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| T |
31427777 |
cattaagattcaccatatttcggatgggaattcctgtgttttcacatatctattaa |
31427722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 78 - 160
Target Start/End: Complemental strand, 31428110 - 31428028
Alignment:
| Q |
78 |
aattatatttgtttatcatatttttatcgaatcaacgccaatccttctatagacggcctaaattttgacttaatcgtaacaac |
160 |
Q |
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| T |
31428110 |
aattctatttgtttatcatatttttatcgaatcaacgccaatccttctatggacggcctaaattttgacttaatcgtagcaac |
31428028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 302 - 412
Target Start/End: Complemental strand, 7172803 - 7172693
Alignment:
| Q |
302 |
atatagattgaattgaaggatcattttggcagcattaagattgaacatactggtattaacacattaagattcaccatattttggatgggaattcctgtgt |
401 |
Q |
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| T |
7172803 |
atatatattgaattgaaagatcattttggcagcattaagattgaaactaatggtattaaaacattaagatcgataatgtttcggatgggaattcctatgt |
7172704 |
T |
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| Q |
402 |
tttcacatatc |
412 |
Q |
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|||||| |||| |
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| T |
7172703 |
tttcacctatc |
7172693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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