View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20753_low_1 (Length: 501)
Name: NF20753_low_1
Description: NF20753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20753_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-119; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 114 - 429
Target Start/End: Complemental strand, 10183057 - 10182750
Alignment:
| Q |
114 |
tgagtcagttctttttaggtgtctctaaaataannnnnnnattgcaaaatgttactatgcttttcctacgaataatctttcaacgaaaaccacctgaatt |
213 |
Q |
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| T |
10183057 |
tgagtaagttctttttaggtgtctctaaaataatttttttattgcaaaatgttactatgtttttcctacgaataatctttcaacgaaaaccacctgaatt |
10182958 |
T |
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| Q |
214 |
ttggttgacnnnnnnnnggacaagattgacttttattaaataaagtatatgtatgtattcttgtttttcggtttgtaggatatagcaaagttgatttctt |
313 |
Q |
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| T |
10182957 |
ttggttgactttttttg--------ttgacttttattaaataaagtatatgtatgtattcttgtttttcggtttgtaggatatagcaaagttgatttctt |
10182866 |
T |
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| Q |
314 |
tttgttaaaatttaaagcctcaatttttaactcatcaacattttaatctcagctcaaacctgttgaactacccaaccctccagcggtaaagtctcgggtt |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| | |||||||||||||||| |
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| T |
10182865 |
tttgttaaaatttaaagcctcaatttttaactcatcaacattttaatctcagctcaaatctgttgaactacccaatcctccggtggtaaagtctcgggtt |
10182766 |
T |
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| Q |
414 |
ttcggatgaacgtgtt |
429 |
Q |
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| T |
10182765 |
ttcggatgaacgtgtt |
10182750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 18 - 116
Target Start/End: Complemental strand, 10181828 - 10181730
Alignment:
| Q |
18 |
agattgatgattaagcaatcacattaatgcagattgattcaagtgtcagcttatttcttagtaacagatgagcctgagttagatcccttcccacgctga |
116 |
Q |
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| T |
10181828 |
agattgatgattaagcaatcacattaatgcagattgattcaagtgtaagcttatttcttagtaacagatgagcctgagttagatcccttcccacgctga |
10181730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 18 - 116
Target Start/End: Complemental strand, 10186868 - 10186770
Alignment:
| Q |
18 |
agattgatgattaagcaatcacattaatgcagattgattcaagtgtcagcttatttcttagtaacagatgagcctgagttagatcccttcccacgctga |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10186868 |
agattgatgattaagcaatcacattaatgcagattgattcaagtgtaagcttatttcttagtaacagatgagcctgagttagatcccttcccacgctga |
10186770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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