View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20753_low_3 (Length: 445)
Name: NF20753_low_3
Description: NF20753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20753_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 46996328 - 46996014
Alignment:
| Q |
1 |
tctctttgctacaacacacatctaaatgatgagcacccattgtttaaaactcgtttctgaatgctttatcaaaccttattctccaattgaagactcaaag |
100 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
46996328 |
tctctgtgctacaacacacatctaaatgatgagcacccattgtttaaaactcgtttctgaatgctttatcaaaccttatcctccaattgaagactcaaag |
46996229 |
T |
|
| Q |
101 |
caaattttctatttagcaccttgggatattgtcatgttgtctgcgaattatatccaaaaggcccttcgcttcaaaaaaccaacttcatcactaaaccaac |
200 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
46996228 |
caaatttgctatttagcaccttgggatattgtcatgttgtctgcgaattatatccaaaaggcccttctcttcaaaaaaccaacttcatcactaaaccaac |
46996129 |
T |
|
| Q |
201 |
aacatttcattgagaatctgatggaaaaacactccctttccctcacacttttccatttccatcccctctcaggtcttcttgttactcaaaaatctgaaga |
300 |
Q |
| |
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| ||||||||||| || || ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||| ||||| |
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| T |
46996128 |
agcatttcattgacaaact------caaacactccctttccctcacacttttccatttctatcccctctcaggtcgtcttgttactaaaaaatccgaaga |
46996035 |
T |
|
| Q |
301 |
tcctcattcttacactatttt |
321 |
Q |
| |
|
|||||||||||||||| |||| |
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| T |
46996034 |
tcctcattcttacactgtttt |
46996014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 53 - 321
Target Start/End: Complemental strand, 46998539 - 46998262
Alignment:
| Q |
53 |
gtttctgaatgctttatcaaaccttattctccaattgaagactcaaagcaaattttctatttagcaccttgggatattgtcatgttgtctgcgaattata |
152 |
Q |
| |
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||||||||||| ||||||||||| | | | ||||| ||||||||||| ||||| | |||||||| ||||||||||||| |||||| ||||| | |||| |
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| T |
46998539 |
gtttctgaatgttttatcaaaccatgtcccccaatcgaagactcaaaccaaatatgctatttaggaccttgggatattagcatgttatctgcatactata |
46998440 |
T |
|
| Q |
153 |
tccaaaaggcccttcgcttcaaaaaaccaacttcatca---ctaaaccaacaacatttcattgagaatctgatggaaaaac------actccctttccct |
243 |
Q |
| |
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| ||||||| |||| ||||||||||||||| |||||| |||||| ||||||||||||| ||||| || | || |||| ||||||||||||| |
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| T |
46998439 |
ttcaaaagggtcttctcttcaaaaaaccaacatcatcatcactaaacaaacaacatttcatagagaacttggtagagaaactgaaacactccctttccct |
46998340 |
T |
|
| Q |
244 |
cacacttttccatttccatcccctctcaggtcttcttgttactcaaaaatctgaagatcctcattcttacactatttt |
321 |
Q |
| |
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|||||||||||||||||||||||||||||| | |||||||||| ||||||||||||| ||||||| ||||||| |||| |
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| T |
46998339 |
cacacttttccatttccatcccctctcaggccgtcttgttactaaaaaatctgaagaccctcatttttacactgtttt |
46998262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 321 - 438
Target Start/End: Complemental strand, 47001982 - 47001865
Alignment:
| Q |
321 |
tctgaaggtcctcattcttacactgtttttgtcgattgcaaaaacagtcgcgaagctaaatttattcttgcaactttagatatcaccatcaatgttattc |
420 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
47001982 |
tctgaagatcctcattcttacactgtttttgtcgattgcaaaaacagtcgaggagctaaatttattcttgcaactttagatatcaccgtcaatgttattc |
47001883 |
T |
|
| Q |
421 |
tctcacctgatgatgtcc |
438 |
Q |
| |
|
||||||||| |||||||| |
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|
| T |
47001882 |
tctcacctgttgatgtcc |
47001865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 51 - 322
Target Start/End: Complemental strand, 46981465 - 46981185
Alignment:
| Q |
51 |
tcgtttctgaatgctttatcaaaccttattctccaattgaagactcaaagcaaattttctatttagcaccttgggatattgtcatgttgtctgcgaatta |
150 |
Q |
| |
|
|||||||| ||| ||||| ||||||||| | |||| |||||||||| ||||| | |||||| ||| ||||||||||| |||||| ||| | |||| |
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|
| T |
46981465 |
tcgtttcttcatgttttattaaaccttatcccacaatcaaagactcaaatcaaatatgttatttaacacattgggatattgccatgttatctacacatta |
46981366 |
T |
|
| Q |
151 |
tatccaaaaggcccttcgcttcaaaaaaccaacttcatca---ctaaaccaacaacatttcattgagaatctgatggaaaaac------actccctttcc |
241 |
Q |
| |
|
|| |||||||| ||| ||||||||||||||| |||||| |||||||||||||||||||| ||||| ||| |||| |||| ||||||||||| |
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|
| T |
46981365 |
taaccaaaagggacttatcttcaaaaaaccaacatcatcatcactaaaccaacaacatttcatagagaacctggtggagaaactgaaacactccctttcc |
46981266 |
T |
|
| Q |
242 |
ctcacacttttccatttccatcccctctcaggtcttcttgttactcaaaaatctgaagatcctcattcttacactattttc |
322 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||| |||||||||| ||||||| ||||||||| ||||||||||| ||||| |
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| T |
46981265 |
ctcacgcttttccatttctatcccctctcaggtcgtcttgttactaaaaaatccgaagatcctgattcttacactgttttc |
46981185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 53 - 322
Target Start/End: Complemental strand, 46975473 - 46975198
Alignment:
| Q |
53 |
gtttctgaatgctttatcaaaccttattctccaattgaagactcaaagcaaattttctatttagcaccttgggatattgtcatgttgtctgcgaattata |
152 |
Q |
| |
|
||||||| ||| ||||| ||||||||| | || || |||||||||| ||||| | |||| || ||| ||||||||||| |||||| ||| | | |||| |
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|
| T |
46975473 |
gtttctgcatgttttattaaaccttatccccctatcaaagactcaaaccaaatatgctatctaacacattgggatattgccatgttatctacacactata |
46975374 |
T |
|
| Q |
153 |
tccaaaaggcccttcgcttcaaaaaaccaacttcatcactaaaccaacaacatttcattgagaatctgatgga------aaaacactccctttccctcac |
246 |
Q |
| |
|
||||||||| |||| |||||| |||||||| |||||||||||||||||||| ||||||||||| || |||| |||||||| ||||| ||||| |
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| T |
46975373 |
tccaaaagggacttctcttcaagaaaccaacatcatcactaaaccaacaacacttcattgagaacctagtggacaaactcaaacactctctttctctcac |
46975274 |
T |
|
| Q |
247 |
acttttccatttccatcccctctcaggtcttcttgttactcaaaaatctgaagatcctcattcttacactattttc |
322 |
Q |
| |
|
|||||| |||| ||||||| || |||| |||||||||| ||||||||||||| ||||||||||||||| ||||| |
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| T |
46975273 |
actttttcattattatcccctgtctggtcgtcttgttactaaaaaatctgaagaccctcattcttacactgttttc |
46975198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 324 - 427
Target Start/End: Complemental strand, 46996039 - 46995936
Alignment:
| Q |
324 |
gaaggtcctcattcttacactgtttttgtcgattgcaaaaacagtcgcgaagctaaatttattcttgcaactttagatatcaccatcaatgttattctct |
423 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||| |||||||||| |||||||| |
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|
| T |
46996039 |
gaagatcctcattcttacactgtttttgtcgattgcaaaaacagtctcggagctaaatttattcatgcaactttagatattaccatcaatgatattctct |
46995940 |
T |
|
| Q |
424 |
cacc |
427 |
Q |
| |
|
|||| |
|
|
| T |
46995939 |
cacc |
46995936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 321 - 436
Target Start/End: Complemental strand, 46998290 - 46998175
Alignment:
| Q |
321 |
tctgaaggtcctcattcttacactgtttttgtcgattgcaaaaacagtcgcgaagctaaatttattcttgcaactttagatatcaccatcaatgttattc |
420 |
Q |
| |
|
||||||| ||||||| ||||||||||||||| |||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||| ||||| |
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|
| T |
46998290 |
tctgaagaccctcatttttacactgtttttgttgattgcaaaaacagtctcggagctaaatttattcatgcaactttagatatcaccatcaatgatattc |
46998191 |
T |
|
| Q |
421 |
tctcacctgatgatgt |
436 |
Q |
| |
|
||||||||| |||||| |
|
|
| T |
46998190 |
tctcacctgttgatgt |
46998175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 321 - 438
Target Start/End: Complemental strand, 46975227 - 46975110
Alignment:
| Q |
321 |
tctgaaggtcctcattcttacactgtttttgtcgattgcaaaaacagtcgcgaagctaaatttattcttgcaactttagatatcaccatcaatgttattc |
420 |
Q |
| |
|
||||||| |||||||||||||||||||| || ||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||| |||| ||||| |
|
|
| T |
46975227 |
tctgaagaccctcattcttacactgttttcgttgattgcaaaaacagtcgcggagctagatttattcatgcaactttagatatcaccataaatgatattc |
46975128 |
T |
|
| Q |
421 |
tctcacctgatgatgtcc |
438 |
Q |
| |
|
||||||| | |||||||| |
|
|
| T |
46975127 |
tctcaccagttgatgtcc |
46975110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 324 - 414
Target Start/End: Complemental strand, 46981211 - 46981121
Alignment:
| Q |
324 |
gaaggtcctcattcttacactgtttttgtcgattgcaaaaacagtcgcgaagctaaatttattcttgcaactttagatatcaccatcaatg |
414 |
Q |
| |
|
|||| |||| |||||||||||||||| ||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
46981211 |
gaagatcctgattcttacactgttttcgtcgattgcaaaaacagtcccggagctaaatttattcatgcaactttagatatcaccataaatg |
46981121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 270 - 321
Target Start/End: Complemental strand, 47002005 - 47001954
Alignment:
| Q |
270 |
caggtcttcttgttactcaaaaatctgaagatcctcattcttacactatttt |
321 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
47002005 |
caggtcttcttgttactcaaaaatctgaagatcctcattcttacactgtttt |
47001954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 53 - 178
Target Start/End: Complemental strand, 47002133 - 47002008
Alignment:
| Q |
53 |
gtttctgaatgctttatcaaaccttattctccaattgaagactcaaagcaaattttctatttagcaccttgggatattgtcatgttgtctgcgaattata |
152 |
Q |
| |
|
||||||||||| || |||||||| ||| | ||||| ||||||||||| ||||| | |||||||| |||||||||||||| |||| | ||| | | |||| |
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|
| T |
47002133 |
gtttctgaatgtttcatcaaaccatatcccccaatcgaagactcaaaccaaatatgctatttaggaccttgggatattgccatgatatcttcacactata |
47002034 |
T |
|
| Q |
153 |
tccaaaaggcccttcgcttcaaaaaa |
178 |
Q |
| |
|
||||||||| |||| |||||||||| |
|
|
| T |
47002033 |
tccaaaagggacttctcttcaaaaaa |
47002008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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