View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20754_high_1 (Length: 802)

Name: NF20754_high_1
Description: NF20754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20754_high_1
NF20754_high_1
[»] chr2 (10 HSPs)
chr2 (10-329)||(10973453-10973777)
chr2 (90-329)||(2973408-2973648)
chr2 (640-784)||(10973998-10974142)
chr2 (108-329)||(14230934-14231156)
chr2 (87-329)||(17826658-17826905)
chr2 (131-209)||(511241-511319)
chr2 (105-246)||(11553321-11553463)
chr2 (103-246)||(11818445-11818589)
chr2 (103-240)||(16206539-16206677)
chr2 (104-192)||(23379917-23380005)
[»] chr8 (7 HSPs)
chr8 (89-312)||(10601022-10601246)
chr8 (90-329)||(20526159-20526401)
chr8 (90-175)||(23558718-23558803)
chr8 (103-240)||(14505721-14505859)
chr8 (103-240)||(37590039-37590177)
chr8 (103-166)||(19299023-19299086)
chr8 (103-240)||(15990412-15990550)
[»] chr1 (11 HSPs)
chr1 (89-307)||(16678732-16678952)
chr1 (89-329)||(47726169-47726415)
chr1 (89-329)||(47747475-47747721)
chr1 (108-279)||(34696110-34696282)
chr1 (103-242)||(41117187-41117327)
chr1 (90-240)||(2002526-2002677)
chr1 (427-516)||(47063063-47063148)
chr1 (108-208)||(30981259-30981359)
chr1 (486-551)||(47026785-47026850)
chr1 (85-240)||(21701457-21701613)
chr1 (103-240)||(30033582-30033720)
[»] chr6 (6 HSPs)
chr6 (85-329)||(30140922-30141167)
chr6 (104-246)||(16416595-16416738)
chr6 (95-246)||(23508844-23508996)
chr6 (103-166)||(34355746-34355809)
chr6 (95-153)||(16890298-16890356)
chr6 (108-145)||(17391997-17392034)
[»] chr4 (15 HSPs)
chr4 (85-329)||(54027686-54027931)
chr4 (86-329)||(12355135-12355379)
chr4 (89-318)||(27066334-27066564)
chr4 (89-318)||(27087435-27087665)
chr4 (139-318)||(27066578-27066758)
chr4 (139-318)||(27066772-27066952)
chr4 (104-189)||(4462624-4462709)
chr4 (94-240)||(28860789-28860936)
chr4 (103-240)||(55227612-55227750)
chr4 (103-247)||(13686001-13686146)
chr4 (103-166)||(54823744-54823807)
chr4 (103-240)||(30859363-30859501)
chr4 (131-170)||(49745960-49745999)
chr4 (103-169)||(20527781-20527847)
chr4 (104-166)||(30190950-30191012)
[»] chr5 (11 HSPs)
chr5 (85-318)||(29754938-29755171)
chr5 (89-329)||(26683384-26683629)
chr5 (104-318)||(5335212-5335427)
chr5 (115-285)||(22864512-22864683)
chr5 (103-246)||(36044911-36045055)
chr5 (116-250)||(40299892-40300027)
chr5 (103-240)||(22292379-22292517)
chr5 (86-178)||(23976592-23976684)
chr5 (103-242)||(27493251-27493391)
chr5 (94-153)||(13948782-13948841)
chr5 (86-153)||(18759803-18759870)
[»] scaffold1964 (1 HSPs)
scaffold1964 (151-329)||(1023-1202)
[»] scaffold0643 (1 HSPs)
scaffold0643 (88-294)||(994-1201)
[»] chr3 (10 HSPs)
chr3 (92-326)||(12370776-12371011)
chr3 (115-178)||(12749485-12749548)
chr3 (90-240)||(18765582-18765733)
chr3 (103-240)||(6006037-6006175)
chr3 (86-166)||(31935315-31935395)
chr3 (108-208)||(45680111-45680211)
chr3 (103-240)||(17790152-17790290)
chr3 (103-240)||(19098594-19098732)
chr3 (103-165)||(36144802-36144864)
chr3 (103-181)||(35906934-35907012)
[»] scaffold0650 (1 HSPs)
scaffold0650 (86-246)||(288-449)
[»] chr7 (6 HSPs)
chr7 (103-246)||(48770106-48770250)
chr7 (103-240)||(32480215-32480353)
chr7 (103-242)||(15633227-15633367)
chr7 (104-166)||(30502581-30502643)
chr7 (85-166)||(3896540-3896621)
chr7 (105-187)||(27810590-27810672)
[»] scaffold0019 (1 HSPs)
scaffold0019 (108-250)||(73345-73488)
[»] scaffold0303 (1 HSPs)
scaffold0303 (94-240)||(14197-14344)
[»] scaffold0040 (1 HSPs)
scaffold0040 (103-166)||(62490-62553)


Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 10 - 329
Target Start/End: Original strand, 10973453 - 10973777
Alignment:
Q  10 acatcatcaatgcatgtagagtctgagattttttagcgttacatacattcacgagcctctannnnnnnnnnnnnn--gagggaaaagtgcttaatgcatt 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                |||||||||||| ||||||||||    
T  10973453 acatcatcaatgcatgtagagtctgagattttttagcgttacatacattcacgagcctctattttttttttttttttgagggaaaagtgtttaatgcatt 10973552  T
Q  108 tcattagtaatcaaagtttcaatacaattgggtatat--gaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccaccac 205  Q
    ||||||||||||||||||||||||||||||| |||||  |||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||    
T  10973553 tcattagtaatcaaagtttcaatacaattggatatatatgaaaataaattgtgggacaaacgagaaatgtggcttcccctacgagagtgtgagccaccac 10973652  T
Q  206 attagcttat-gccgaacaaactccacccgagagttggtaaacttgaacgagagcaaagaccgggaagtcgtgatgatgttaccaaattctgttatgtct 304  Q
    |||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  10973653 attagcttgtcgccgaacaaactccacccgagagttggtaaacttggacgagagcaaagaccgggaagccgtgatgatgttaccaaattctgttatgtct 10973752  T
Q  305 tcctgacccgaatatagagcatctt 329  Q
    |||||||||||||||||||||||||    
T  10973753 tcctgacccgaatatagagcatctt 10973777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 157; E-Value: 5e-83
Query Start/End: Original strand, 90 - 329
Target Start/End: Original strand, 2973408 - 2973648
Alignment:
Q  90 aaaagtgcttaatgcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcga 189  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||| |||||||| |||||    
T  2973408 aaaagtgcttatagcatttcattagtaatcaaagtttcaatacaattgggtatacgaaaatacatagtgggactagcgagaaatgcggcttcccttgcga 2973507  T
Q  190 gagtgtgagccaccacattagcttat-gccgaacaaactccacccgagagttggtaaacttgaacgagagcaaagaccgggaagtcgtgatgatgttacc 288  Q
    ||||||| ||||| |||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||| |||||||||||| ||    
T  2973508 gagtgtgggccacaacattagcttgtggccgaacaaactccacccgagagttggtaaacttggacgagagcaaagactaggaagccgtgatgatgttgcc 2973607  T
Q  289 aaattctgttatgtcttcctgacccgaatatagagcatctt 329  Q
    |||||| |||||||||||| ||||||| || ||||||||||    
T  2973608 aaattcagttatgtcttcccgacccgagtaaagagcatctt 2973648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 640 - 784
Target Start/End: Original strand, 10973998 - 10974142
Alignment:
Q  640 gtgccggacatatttttgattcccacttttcacagcctcatctccatttctttttggtgccatcacctcaaacctaagtttaagtttttataaattctag 739  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  10973998 gtgccggacatatttttggttcccactttccacagcctcatctccatttctttttggtgccatcacctcaaacctaagtttaagtttatataaattctag 10974097  T
Q  740 aattatcaacttcgtttctatatcatcacgtttccctttcacttt 784  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  10974098 aattatcaacttcgtttctatatcatcacgtttccctttcacttt 10974142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 108 - 329
Target Start/End: Complemental strand, 14231156 - 14230934
Alignment:
Q  108 tcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccaccacat 207  Q
    |||||| ||||||||||||||||||||||||||||||||||||| ||   |||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  14231156 tcattaataatcaaagtttcaatacaattgggtatatgaaaatagataacgggactagcgagaaatgtggcttcccttgcaagagtgtgagccaccacat 14231057  T
Q  208 tagcttat-gccgaacaaactccacccgagagttggtaaacttgaacgagagcaaagaccgggaagtcgtgatgatgttaccaaattctgttatgtcttc 306  Q
    |||||| | ||| |||||||||||| | |||||||||||||||| || | |||||||||||||| |  ||||||||||| |||||||| |||||||||||    
T  14231056 tagcttgtcgcctaacaaactccactctagagttggtaaacttggacaaaagcaaagaccgggaggctgtgatgatgtttccaaattcggttatgtcttc 14230957  T
Q  307 ctgacccgaatatagagcatctt 329  Q
    | |||||||||| ||| ||||||    
T  14230956 ccgacccgaataaagaccatctt 14230934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 87 - 329
Target Start/End: Complemental strand, 17826905 - 17826658
Alignment:
Q  87 gggaaaagtgcttaatgcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctg 186  Q
    |||||| |||||||  | ||||||||  ||||||||||||||||||||||| |||||||| ||||||| | |||||||||||| ||| ||||||| |||     
T  17826905 gggaaaggtgcttatagtatttcattgataatcaaagtttcaatacaattgagtatatgataataaatagcgggactagcgaggaatatggcttctccta 17826806  T
Q  187 cgagagtgtgagccaccacattagcttat-gccgaacaaactccacccgagagttggtaaacttgaacgagag--caaagaccgggaag-tc-gtgatga 281  Q
    | | ||||||||||||||||||| ||| | ||| | |||||||||||  ||||||| |||||||| || ||||   ||||||| ||||| || |||||||    
T  17826805 caacagtgtgagccaccacattatcttgtcgcctagcaaactccaccgtagagttgctaaacttggacaagagtaaaaagaccaggaagctctgtgatga 17826706  T
Q  282 tgttaccaaattctgttatgtcttcctgacccgaatatagagcatctt 329  Q
    ||||||||||||| ||||| |||||| ||| |||||| ||||||||||    
T  17826705 tgttaccaaattcggttatatcttcccgacacgaataaagagcatctt 17826658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 131 - 209
Target Start/End: Original strand, 511241 - 511319
Alignment:
Q  131 acaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccaccacatta 209  Q
    |||||||||||||||||||||||| | |||||||||||||||||||||||| | ||| |||||||||||||||||||||    
T  511241 acaattgggtatatgaaaataaatagcgggactagcgagaaatgtggcttctcttgcaagagtgtgagccaccacatta 511319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 105 - 246
Target Start/End: Complemental strand, 11553463 - 11553321
Alignment:
Q  105 atttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccacca 204  Q
    ||||||||| |||| | |||||||||| | | |||||||||||||||||| ||||||||||| || ||||||||||| |||||||||   ||| | |||     
T  11553463 atttcattaataataagagtttcaatatattcgggtatatgaaaataaatggtgggactagctagtaatgtggcttctcctgcgagaacatgatcaacct 11553364  T
Q  205 cattagcttat-gccgaacaaactccacccgagagttggtaaa 246  Q
    ||||||||| | |||||  ||||||||||| ||||||||||||    
T  11553363 cattagcttgtcgccgagtaaactccaccctagagttggtaaa 11553321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 103 - 246
Target Start/End: Original strand, 11818445 - 11818589
Alignment:
Q  103 gcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccac 202  Q
    ||||||||||| |||| | || ||||||| |||||||||| |||||||||||   ||||||||| || || |||||||| ||||| |||   ||||| ||    
T  11818445 gcatttcattaataataagaggttcaatataattgggtatctgaaaataaataacgggactagctagtaacgtggcttctcctgcaagaacatgagcaac 11818544  T
Q  203 cacattagcttat-gccgaacaaactccacccgagagttggtaaa 246  Q
    | | || |||| | ||| |||||||||||||| ||||||||||||    
T  11818545 ctcgtttgcttgtcgcctaacaaactccaccctagagttggtaaa 11818589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 240
Target Start/End: Complemental strand, 16206677 - 16206539
Alignment:
Q  103 gcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccac 202  Q
    ||||||||||  |||| | ||||||||||||||||||||||| ||||||||  | ||||||||| | | | ||||| |||| ||| ||||  ||||| ||    
T  16206677 gcatttcatttataataagagtttcaatacaattgggtatattaaaataaacggcgggactagctaaagacgtggcctcccttgcaagagcatgagcaac 16206578  T
Q  203 cacattagcttat-gccgaacaaactccacccgagagtt 240  Q
    ||| || |||| | ||| |||||||||||||| ||||||    
T  16206577 cacgttggcttgtcgcctaacaaactccaccctagagtt 16206539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 192
Target Start/End: Complemental strand, 23380005 - 23379917
Alignment:
Q  104 catttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagag 192  Q
    |||||||||| |||| | ||||||||||||||||||||| | ||||||||  | || |||||| || |||||| |||| | ||||||||    
T  23380005 catttcattaataataatagtttcaatacaattgggtattttaaaataaacagcggaactagctagtaatgtgacttctcttgcgagag 23379917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 169; Significance: 3e-90; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 89 - 312
Target Start/End: Complemental strand, 10601246 - 10601022
Alignment:
Q  89 gaaaagtgcttaatgcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcg 188  Q
    ||||||||||||  ||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  10601246 gaaaagtgcttatagcatttcattagtaatcaaagtttcaatataattgggtatatgaagataaatagtgggactagcgagaaatgtggcttcccctgcg 10601147  T
Q  189 agagtgtgagccaccacattagcttat-gccgaacaaactccacccgagagttggtaaacttgaacgagagcaaagaccgggaagtcgtgatgatgttac 287  Q
    ||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||| |    
T  10601146 agagtgtgagccaccacattagcttgtcgccgaacaaactccacctgagagttggtaaacttggacgagagcaaagaccggaaagtcgtgatgatgttgc 10601047  T
Q  288 caaattctgttatgtcttcctgacc 312  Q
    ||||||| |||||||||||| ||||    
T  10601046 caaattcagttatgtcttcccgacc 10601022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 128; E-Value: 9e-66
Query Start/End: Original strand, 90 - 329
Target Start/End: Original strand, 20526159 - 20526401
Alignment:
Q  90 aaaagtgcttaatgcatttcattagta--atcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgc 187  Q
    ||||||| |||  ||||||||||||||  || ||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||| ||||||||    
T  20526159 aaaagtgtttatagcatttcattagtataattaaagtttcaatacaattgggtatatgaaaataaatagtgcgactagtgagaaatgtggcctcccctgc 20526258  T
Q  188 gagagtgtgagccaccacattagcttat-gccgaacaaactccacccgagagttggtaaacttgaacgagagcaaagaccgggaagtcgtgatgatgtta 286  Q
    |||||| ||||||||||||||| ||| | ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||   |||| ||||||    
T  20526259 gagagtatgagccaccacattaacttgtcgccgaacaaactccacccgagagttggtaaatttgaacgagagcaaaaaccgggaagcaatgataatgtta 20526358  T
Q  287 ccaaattctgttatgtcttcctgacccgaatatagagcatctt 329  Q
    || | ||| |||||||||||| ||||||| || | ||||||||    
T  20526359 ccgacttcagttatgtcttcccgacccgagtaaatagcatctt 20526401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 90 - 175
Target Start/End: Complemental strand, 23558803 - 23558718
Alignment:
Q  90 aaaagtgcttaatgcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgt 175  Q
    |||||||||||   ||||||||||  ||||||||| |||||||| | |||||| ||||||||||| ||||||||||| ||||||||    
T  23558803 aaaagtgcttataacatttcattaacaatcaaagtctcaatacattggggtatgtgaaaataaatagtgggactagctagaaatgt 23558718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 240
Target Start/End: Complemental strand, 14505859 - 14505721
Alignment:
Q  103 gcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccac 202  Q
    ||||||||||  |||| | ||||||||||||||||||||||| ||||||||  | ||||||||| | | | ||||| |||| ||| ||||  ||||| ||    
T  14505859 gcatttcatttataataagagtttcaatacaattgggtatattaaaataaacggcgggactagctaaagacgtggcctcccttgcaagagcatgagcaac 14505760  T
Q  203 cacattagcttat-gccgaacaaactccacccgagagtt 240  Q
    ||| || |||| | ||| |||||||||||||| ||||||    
T  14505759 cacgttggcttgtcgcctaacaaactccaccctagagtt 14505721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 240
Target Start/End: Original strand, 37590039 - 37590177
Alignment:
Q  103 gcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccac 202  Q
    ||||||||||| |||| | ||||||||||||||||||||||| ||||||||  | || |||||| | | | ||||| |||| ||| ||||  ||||| ||    
T  37590039 gcatttcattaataataagagtttcaatacaattgggtatattaaaataaacggcggaactagctaaagacgtggcctcccttgcaagagcatgagcaac 37590138  T
Q  203 cacattagcttat-gccgaacaaactccacccgagagtt 240  Q
    ||| || |||| | ||| |||||||||||||| ||||||    
T  37590139 cacgttggcttgtcgcctaacaaactccaccctagagtt 37590177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 103 - 166
Target Start/End: Original strand, 19299023 - 19299086
Alignment:
Q  103 gcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagc 166  Q
    ||||||||||| |||| ||| ||||||||||||||||||||| ||||||||  | |||||||||    
T  19299023 gcatttcattaataataaaaatttcaatacaattgggtatatcaaaataaacggcgggactagc 19299086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 240
Target Start/End: Original strand, 15990412 - 15990550
Alignment:
Q  103 gcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccac 202  Q
    ||||||||||  |||| | ||||||||||||||||||||||| ||||||||  | ||||||||| | | | ||||| |||| ||| ||||  ||||| ||    
T  15990412 gcatttcatttataataagagtttcaatacaattgggtatattaaaataaacggcgggactagctaaagacgtggcctcccttgcaagagcatgagcaac 15990511  T
Q  203 cacattagcttat-gccgaacaaactccacccgagagtt 240  Q
    ||| |  |||| | ||| |||||||||||||| ||||||    
T  15990512 cacgtaggcttgtcgcctaacaaactccaccctagagtt 15990550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 149; Significance: 3e-78; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 89 - 307
Target Start/End: Original strand, 16678732 - 16678952
Alignment:
Q  89 gaaaagtgcttaatgcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcg 188  Q
    ||||||||||||  |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  16678732 gaaaagtgcttatagcatttcattagtaatcaaagtttcaatccaattgggtatatgaaaataaatagtgggacaagcgagaaatgtggcttcccctgcg 16678831  T
Q  189 agagtgtgagccaccacattagcttat-gccgaacaaactccacccgagagttggtaaacttgaacgagagcaaagaccgggaagtcgtgatgatgttac 287  Q
    |||||||||||||||||||||  || | |||||||||||||||| |||||||||||||||||  ||||||||||||||||||||| |||||||||||| |    
T  16678832 agagtgtgagccaccacattaatttgtcgccgaacaaactccacgcgagagttggtaaactttgacgagagcaaagaccgggaagccgtgatgatgttgc 16678931  T
Q  288 caaattctg-ttatgtcttcc 307  Q
    ||||||| | |||||||||||    
T  16678932 caaattcagtttatgtcttcc 16678952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 89 - 329
Target Start/End: Complemental strand, 47726415 - 47726169
Alignment:
Q  89 gaaaagtgcttaatgcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcg 188  Q
    |||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  47726415 gaaaagtgtttatagcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaatagtgggactagcgagaaatgtggctttccctgcg 47726316  T
Q  189 agagtgtgagccaccacat-----tagcttat-gccgaacaaactccacccgagagttggtaaacttgaacgagagcaaagaccgggaagtcgtgatgat 282  Q
    |||||||||| ||||||||     |||||| | ||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||   ||||||||    
T  47726315 agagtgtgagacaccacattataatagcttgtcgccaaacaaactccactcgagagttggtaaacttggacgagagcaaagaccgggaatatgtgatgat 47726216  T
Q  283 gttaccaaattctgttatgtcttcctgacccgaatatagagcatctt 329  Q
    ||| |||||||| |||||||||||| ||| ||| || ||||| ||||    
T  47726215 gttgccaaattcagttatgtcttcccgactcgagtaaagagcgtctt 47726169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 89 - 329
Target Start/End: Complemental strand, 47747721 - 47747475
Alignment:
Q  89 gaaaagtgcttaatgcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcg 188  Q
    |||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  47747721 gaaaagtgtttatagcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaatagtgggactagcgagaaatgtggctttccctgcg 47747622  T
Q  189 agagtgtgagccaccacat-----tagcttat-gccgaacaaactccacccgagagttggtaaacttgaacgagagcaaagaccgggaagtcgtgatgat 282  Q
    |||||||||| ||||||||     |||||| | ||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||   ||||||||    
T  47747621 agagtgtgagacaccacattataatagcttgtcgccaaacaaactccactcgagagttggtaaacttggacgagagcaaagaccgggaatatgtgatgat 47747522  T
Q  283 gttaccaaattctgttatgtcttcctgacccgaatatagagcatctt 329  Q
    ||| |||||||| |||||||||||| ||| ||| || ||||| ||||    
T  47747521 gttgccaaattcagttatgtcttcccgactcgagtaaagagcgtctt 47747475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 108 - 279
Target Start/End: Original strand, 34696110 - 34696282
Alignment:
Q  108 tcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccaccacat 207  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||    | ||||||| ||||| ||||  || ||| ||||||| ||||| |||||||    
T  34696110 tcattaataatcaaagtttcaatacaatggggtatatgaaaataaacaacgagactagctagaaacgtggtctctccttcgagagtatgagcaaccacat 34696209  T
Q  208 tagcttat-gccgaacaaactccacccgagagttggtaaacttgaacgagagcaaagaccgggaagtcgtgat 279  Q
    |  ||| |  || | |||||||||||||||||||| | |||||| | ||||| | |  |||||||| ||||||    
T  34696210 tttcttgtctcctagcaaactccacccgagagttgttgaacttggaagagagaagaatccgggaagccgtgat 34696282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 103 - 242
Target Start/End: Complemental strand, 41117327 - 41117187
Alignment:
Q  103 gcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccac 202  Q
    ||||||||||  |||| | ||||| ||||||||||||||| | ||||||||  ||||||||||| || || |||||||| | ||| ||||  ||||| ||    
T  41117327 gcatttcattgataataatagtttgaatacaattgggtatctcaaaataaacggtgggactagctagtaacgtggcttctcttgcaagagcatgagcaac 41117228  T
Q  203 cacattagcttat-gccgaacaaactccacccgagagttgg 242  Q
    | |||| |||| | ||| |||||||||||||||||||||||    
T  41117227 ctcattggcttgtcgcctaacaaactccacccgagagttgg 41117187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 90 - 240
Target Start/End: Original strand, 2002526 - 2002677
Alignment:
Q  90 aaaagtgcttaatgcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcga 189  Q
    ||||||| |||  |||| |||||| |||||||||||||||||||| | ||||||  ||||||| |    |||||||||||||||||||  || | |||||    
T  2002526 aaaagtgtttatagcatctcattaataatcaaagtttcaatacaactaggtataataaaataagtaactggactagcgagaaatgtggtctctcatgcga 2002625  T
Q  190 gagtgtgagccaccacattagcttat-gccgaacaaactccacccgagagtt 240  Q
    |||| ||||| |||||||| |||| |  ||  ||||||||||||||||||||    
T  2002626 gagtatgagcaaccacatttgcttgtctcctgacaaactccacccgagagtt 2002677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 427 - 516
Target Start/End: Complemental strand, 47063148 - 47063063
Alignment:
Q  427 tgccaagtttggggtgggagtggatagtagatatatagtagaaacaacgccttctagttccacatcgctgcaaagaaacattacatacat 516  Q
    ||||||||| |||||| ||||||| ||||||||    ||||||| |||||||  |||| ||||||||||||||||||||||| |||||||    
T  47063148 tgccaagttgggggtgagagtggagagtagata----gtagaaataacgcctggtagtcccacatcgctgcaaagaaacatttcatacat 47063063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 208
Target Start/End: Complemental strand, 30981359 - 30981259
Alignment:
Q  108 tcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccaccacat 207  Q
    |||||| |||| ||||||||||||||| ||||||||  ||||||| |   || |||||||||||||||| | |  ||||||||||| ||||| |||||||    
T  30981359 tcattaataattaaagtttcaatacaactgggtataacaaaataagtaacggaactagcgagaaatgtgacctttcctgcgagagtatgagcaaccacat 30981260  T
Q  208 t 208  Q
    |    
T  30981259 t 30981259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 486 - 551
Target Start/End: Complemental strand, 47026850 - 47026785
Alignment:
Q  486 ccacatcgctgcaaagaaacattacatacatgaagatatcttatataagtgcctttgacaaagtca 551  Q
    ||||||||||||||| ||||||| |||||||| | || | |||||||| ||||||||||| |||||    
T  47026850 ccacatcgctgcaaacaaacattgcatacatggacatgttttatataattgcctttgacagagtca 47026785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 240
Target Start/End: Original strand, 21701457 - 21701613
Alignment:
Q  85 gagggaaaagtgcttaatgcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccc 184  Q
    |||||||| |||||||  ||||||||||| | || | |||||||||||||||| |||||| | ||||||  | ||||||||| | | | ||||| || |     
T  21701457 gagggaaacgtgcttatagcatttcattaatcataagagtttcaatacaattgagtatatcataataaacggcgggactagctaaagacgtggcctctcg 21701556  T
Q  185 tgcgagagtgtgagccaccacattagcttat-gccgaacaaactccacccgagagtt 240  Q
    ||  ||||  ||||| ||||| || |||||| ||| |||||||||||||| ||||||    
T  21701557 tgaaagagcatgagcaaccacgttggcttatcgcctaacaaactccaccctagagtt 21701613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 103 - 240
Target Start/End: Complemental strand, 30033720 - 30033582
Alignment:
Q  103 gcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccac 202  Q
    ||||||||||  |||| | |||||||||| |||||||||||| ||||||||  | ||||||||| | | | ||||| |||| ||| ||||  ||||| ||    
T  30033720 gcatttcatttataataagagtttcaatataattgggtatattaaaataaacggcgggactagctaaagacgtggcctcccttgcaagagcatgagcaac 30033621  T
Q  203 cacattagcttat-gccgaacaaactccacccgagagtt 240  Q
    |||  | |||| | ||| |||||||||||||| ||||||    
T  30033620 cacgctggcttgtcgcctaacaaactccaccctagagtt 30033582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 142; Significance: 4e-74; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 85 - 329
Target Start/End: Original strand, 30140922 - 30141167
Alignment:
Q  85 gagggaaaagtgcttaatgcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccc 184  Q
    ||||||||||||||||  ||||||||||| ||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||      
T  30140922 gagggaaaagtgcttatagcatttcattaataatcaaagtttcaatacaattgggtatatgaaaatagatagcgggactagcgagaaatgtggcttcctt 30141021  T
Q  185 tgcgagagtgtgagccaccacattagcttat-gccgaacaaactccacccgagagttggtaaacttgaacgagagcaaagaccgggaagtcgtgatgatg 283  Q
    ||| ||||||||| ||||||||||||||| | ||| |||||||||||||| |||||||||||||||| || | ||||||||||||||||  |||||||||    
T  30141022 tgcaagagtgtgatccaccacattagcttgtcgcctaacaaactccaccctagagttggtaaacttggacaaaagcaaagaccgggaagctgtgatgatg 30141121  T
Q  284 ttaccaaattctgttatgtcttcctgacccgaatatagagcatctt 329  Q
    || ||| |||| |||||||||||| |||||||||| ||| ||||||    
T  30141122 tttccacattccgttatgtcttcccgacccgaataaagaccatctt 30141167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 104 - 246
Target Start/End: Complemental strand, 16416738 - 16416595
Alignment:
Q  104 catttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccacc 203  Q
    |||||||||| |||| | || ||||||||||||||||||||||||||||||  || ||||||| || |||||| | || ||||| ||| |  |||| |||    
T  16416738 catttcattaataataagaggttcaatacaattgggtatatgaaaataaataatgagactagctagtaatgtgacatctcctgcaagaatacgagcaacc 16416639  T
Q  204 acattagcttat-gccgaacaaactccacccgagagttggtaaa 246  Q
     ||||  ||| | ||| |||||||| ||||| ||||||||||||    
T  16416638 tcatttacttgtcgcctaacaaactacaccctagagttggtaaa 16416595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 246
Target Start/End: Original strand, 23508844 - 23508996
Alignment:
Q  95 tgcttaatgcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtg 194  Q
    |||||| |||||||||||| |||| | || |||||||||||  ||||| ||||| ||||    |||||||||  | ||||||||||| ||||| |||       
T  23508844 tgcttattgcatttcattaataataagaggttcaatacaatcaggtatgtgaaattaaacaacgggactagctcgtaatgtggcttctcctgcaagaaca 23508943  T
Q  195 tgagccaccacattagcttat-gccgaacaaactccacccgagagttggtaaa 246  Q
    ||||| ||| |||| |||| | ||| |||||||||||||| ||| ||||||||    
T  23508944 tgagcaaccccatttgcttgtcgcctaacaaactccaccctagaattggtaaa 23508996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 166
Target Start/End: Original strand, 34355746 - 34355809
Alignment:
Q  103 gcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagc 166  Q
    ||||||||||  |||| | ||||||||||||||||||||||| ||||||||  | |||||||||    
T  34355746 gcatttcattgataataagagtttcaatacaattgggtatatcaaaataaacagcgggactagc 34355809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 95 - 153
Target Start/End: Complemental strand, 16890356 - 16890298
Alignment:
Q  95 tgcttaatgcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaa 153  Q
    |||||| |||||||||||| |||  | |||||||| |||||||||||||| ||||||||    
T  16890356 tgcttattgcatttcattaataacaagagtttcaaaacaattgggtatatcaaaataaa 16890298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 145
Target Start/End: Original strand, 17391997 - 17392034
Alignment:
Q  108 tcattagtaatcaaagtttcaatacaattgggtatatg 145  Q
    |||||| ||||||||||||||||||||| |||||||||    
T  17391997 tcattaataatcaaagtttcaatacaatagggtatatg 17392034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 134; Significance: 2e-69; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 85 - 329
Target Start/End: Original strand, 54027686 - 54027931
Alignment:
Q  85 gagggaaaagtgcttaatgcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccc 184  Q
    |||||||| |||||||   |||||||||| ||||||||||||||||| |||||||||||||||||||||| | |||| ||||||||||||||||||||||    
T  54027686 gagggaaatgtgcttatatcatttcattaataatcaaagtttcaatataattgggtatatgaaaataaatagcgggagtagcgagaaatgtggcttcccc 54027785  T
Q  185 tgcgagagtgtgagccaccacattagcttat-gccgaacaaactccacccgagagttggtaaacttgaacgagagcaaagaccgggaagtcgtgatgatg 283  Q
    | | ||||||||||||||||||||||||| | ||| || ||||||||||| |||||||||||||||| || |||| |||||||||||||| |||||||||    
T  54027786 tacaagagtgtgagccaccacattagcttgtcgcctaaaaaactccaccctagagttggtaaacttggacaagagtaaagaccgggaagttgtgatgatg 54027885  T
Q  284 ttaccaaattctgttatgtcttcctgacccgaatatagagcatctt 329  Q
    ||||||||||| ||||| |||||| ||| |||| | ||||| ||||    
T  54027886 ttaccaaattcggttatatcttcccgactcgaacaaagagcgtctt 54027931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 86 - 329
Target Start/End: Complemental strand, 12355379 - 12355135
Alignment:
Q  86 agggaaaagtgcttaatgcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccct 185  Q
    ||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||  |    
T  12355379 agggaaaggtgcttaaagcatttcattaataatcaaagtttcaatacaattgggtatatgaaaatagatagtgggactagcgagaaatgtggtttccttt 12355280  T
Q  186 gcgagagtgtgagccaccacattagcttat-gccgaacaaactccacccgagagttggtaaacttgaacgagagcaaagaccgggaagtcgtgatgatgt 284  Q
    |  ||||||||||||||||||||| ||| | ||| |||||||||||||| |||||||||||||||| || | ||||| ||||||||||  |||||||| |    
T  12355279 ggaagagtgtgagccaccacattaccttgtcgcctaacaaactccaccctagagttggtaaacttggacaaaagcaaggaccgggaagctgtgatgatat 12355180  T
Q  285 taccaaattctgttatgtcttcctgacccgaatatagagcatctt 329  Q
    | |||||||| |||||||||||| |||||||||| ||| ||||||    
T  12355179 ttccaaattccgttatgtcttcccgacccgaataaagaccatctt 12355135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 89 - 318
Target Start/End: Original strand, 27066334 - 27066564
Alignment:
Q  89 gaaaagtgcttaatgcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcg 188  Q
    |||| |||||||  ||||||||||| ||||||||||||||||||||||| ||||||||||||| || | |||||||||||||||||||||||||  |||     
T  27066334 gaaatgtgcttatagcatttcattaataatcaaagtttcaatacaattgagtatatgaaaatagatagcgggactagcgagaaatgtggcttcctttgca 27066433  T
Q  189 agagtgtgagccaccacattagcttat-gccgaacaaactccacccgagagttggtaaacttgaacgagagcaaagaccgggaagtcgtgatgatgttac 287  Q
    ||||||||| ||||||||||||||| | ||| |||||||||||||| |||||||||||||||| || | ||||||||||||||||| ||||||||||| |    
T  27066434 agagtgtgacccaccacattagcttgtcgcccaacaaactccaccctagagttggtaaacttggacaaaagcaaagaccgggaagttgtgatgatgtttc 27066533  T
Q  288 caaattctgttatgtcttcctgacccgaata 318  Q
    |||||||  ||||||||||| ||||||||||    
T  27066534 caaattccattatgtcttcccgacccgaata 27066564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 89 - 318
Target Start/End: Original strand, 27087435 - 27087665
Alignment:
Q  89 gaaaagtgcttaatgcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcg 188  Q
    |||| |||||||  ||||||||||| ||||||||||||||||||||||| ||||||||||||| || | |||||||||||||||||||||||||  |||     
T  27087435 gaaatgtgcttatagcatttcattaataatcaaagtttcaatacaattgagtatatgaaaatagatagcgggactagcgagaaatgtggcttcctttgca 27087534  T
Q  189 agagtgtgagccaccacattagcttat-gccgaacaaactccacccgagagttggtaaacttgaacgagagcaaagaccgggaagtcgtgatgatgttac 287  Q
    ||||||||| ||||||||||||||| | ||| |||||||||||||| |||||||||||||||| || | |||||||||||| |||| ||||||||||| |    
T  27087535 agagtgtgacccaccacattagcttgtcgcctaacaaactccaccctagagttggtaaacttggacaaaagcaaagaccggaaagttgtgatgatgtttc 27087634  T
Q  288 caaattctgttatgtcttcctgacccgaata 318  Q
    |||||||  ||||||||||| ||||||||||    
T  27087635 caaattccattatgtcttcccgacccgaata 27087665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 139 - 318
Target Start/End: Original strand, 27066578 - 27066758
Alignment:
Q  139 gtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccaccacattagcttat-gccgaacaaactccacccgaga 237  Q
    ||||||||||||| || | |||||||||||||||||||||||||  ||| ||||||||| ||||||||||||||| | ||| |||||||||||||| |||    
T  27066578 gtatatgaaaatagatagcgggactagcgagaaatgtggcttcctttgcaagagtgtgacccaccacattagcttgtcgcctaacaaactccaccctaga 27066677  T
Q  238 gttggtaaacttgaacgagagcaaagaccgggaagtcgtgatgatgttaccaaattctgttatgtcttcctgacccgaata 318  Q
    ||||||||||||| || | |||||||||||| |||| ||||||||||| ||||||||  ||||||||||| ||||||||||    
T  27066678 gttggtaaacttggacaaaagcaaagaccggaaagttgtgatgatgtttccaaattccattatgtcttcccgacccgaata 27066758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 139 - 318
Target Start/End: Original strand, 27066772 - 27066952
Alignment:
Q  139 gtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccaccacattagcttat-gccgaacaaactccacccgaga 237  Q
    ||||||||||||| || | |||||||||||||||||||||||||  ||| ||||||||| ||||||||||||||| | ||| |||||||||||||| |||    
T  27066772 gtatatgaaaatagatagcgggactagcgagaaatgtggcttcctttgcaagagtgtgacccaccacattagcttgtcgcctaacaaactccaccctaga 27066871  T
Q  238 gttggtaaacttgaacgagagcaaagaccgggaagtcgtgatgatgttaccaaattctgttatgtcttcctgacccgaata 318  Q
    ||||||||||||| || | |||||||||||| |||| ||||||||||| ||||||||  ||||||||||| ||||||||||    
T  27066872 gttggtaaacttggacaaaagcaaagaccggaaagttgtgatgatgtttccaaattccattatgtcttcccgacccgaata 27066952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 104 - 189
Target Start/End: Complemental strand, 4462709 - 4462624
Alignment:
Q  104 catttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcga 189  Q
    ||||| |||| |||| |||||||||||||| |  | ||||||||||||||||||||||||||  || ||||||||||| |||||||    
T  4462709 cattttattaataataaaagtttcaatacattcagatatatgaaaataaattgtgggactagttagtaatgtggcttctcctgcga 4462624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 94 - 240
Target Start/End: Complemental strand, 28860936 - 28860789
Alignment:
Q  94 gtgcttaatgcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagt 193  Q
    |||||||  |||| |||||  ||||||||| ||||||||||||| |||||  | |||||| |  || |||||| |  |||||||| || |  ||||||||    
T  28860936 gtgcttatagcatatcatttataatcaaagattcaatacaattgagtatagcataataaactacggcactagctaataatgtggcctctctagcgagagt 28860837  T
Q  194 gtgagccaccacattagcttat-gccgaacaaactccacccgagagtt 240  Q
    |||||| |||||||| |||| | ||| |||||||||||||||||||||    
T  28860836 gtgagctaccacattggcttgtcgcctaacaaactccacccgagagtt 28860789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 240
Target Start/End: Complemental strand, 55227750 - 55227612
Alignment:
Q  103 gcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccac 202  Q
    ||||||||||  |||| | ||||||||||||||||||||||| ||||||||  | ||||||||| | | ||||||| |||| ||| ||||  ||||| ||    
T  55227750 gcatttcatttataataagagtttcaatacaattgggtatattaaaataaacggcgggactagctaaagatgtggcctcccttgcaagagcatgagcaac 55227651  T
Q  203 cacattagcttat-gccgaacaaactccacccgagagtt 240  Q
    ||| || | || | ||| |||||||||||||| ||||||    
T  55227650 cacgttggtttgtcgcctaacaaactccaccctagagtt 55227612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 103 - 247
Target Start/End: Complemental strand, 13686146 - 13686001
Alignment:
Q  103 gcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccac 202  Q
    ||||||||||| |||| | || ||||||||||| |||||||||||||||||   |||||||||| || || ||| |||| | ||| |||   ||||| ||    
T  13686146 gcatttcattaataataagagattcaatacaatcgggtatatgaaaataaacaatgggactagctagtaacgtgacttctcttgcaagaacatgagcaac 13686047  T
Q  203 cacattagcttat-gccgaacaaactccacccgagagttggtaaac 247  Q
    | | || |||| | ||| |||||||||||||| |||||||||||||    
T  13686046 cccgtttgcttgtcgcctaacaaactccaccctagagttggtaaac 13686001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 103 - 166
Target Start/End: Complemental strand, 54823807 - 54823744
Alignment:
Q  103 gcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagc 166  Q
    ||||||||||| |||| ||| ||||||||||||||||||||| ||||||||  | |||||||||    
T  54823807 gcatttcattaataataaaaatttcaatacaattgggtatatcaaaataaacggcgggactagc 54823744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 240
Target Start/End: Complemental strand, 30859501 - 30859363
Alignment:
Q  103 gcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccac 202  Q
    ||||||||||  |||| | ||||||||||||||||||||||| ||||||||  | ||||||||  | | | ||||| |||| ||| ||||  ||||| ||    
T  30859501 gcatttcatttataataagagtttcaatacaattgggtatattaaaataaacggcgggactagttaaagacgtggcctcccttgcaagagcatgagcaac 30859402  T
Q  203 cacattagcttat-gccgaacaaactccacccgagagtt 240  Q
    ||| || |||| | ||| |||||||||||||| ||||||    
T  30859401 cacgttggcttgtcgcctaacaaactccaccctagagtt 30859363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 170
Target Start/End: Original strand, 49745960 - 49745999
Alignment:
Q  131 acaattgggtatatgaaaataaattgtgggactagcgaga 170  Q
    |||||||||||||||||||||||| ||||||| |||||||    
T  49745960 acaattgggtatatgaaaataaatagtgggacaagcgaga 49745999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 103 - 169
Target Start/End: Original strand, 20527781 - 20527847
Alignment:
Q  103 gcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgag 169  Q
    ||||||||||  |||| | |||||||||||||| |||||||| | ||||||| | ||||||||||||    
T  20527781 gcatttcattgataataagagtttcaatacaatcgggtatatcataataaatggcgggactagcgag 20527847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 104 - 166
Target Start/End: Original strand, 30190950 - 30191012
Alignment:
Q  104 catttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagc 166  Q
    |||||||||| |||| | ||||||||||||||||| ||||| ||||||||  | |||||||||    
T  30190950 catttcattaataataagagtttcaatacaattggatatatcaaaataaacggcgggactagc 30191012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 123; Significance: 9e-63; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 123; E-Value: 9e-63
Query Start/End: Original strand, 85 - 318
Target Start/End: Original strand, 29754938 - 29755171
Alignment:
Q  85 gagggaaaagtgcttaatgcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccc 184  Q
    |||||||| |||||||  ||||||||||| ||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||| |      
T  29754938 gagggaaaggtgcttatagcatttcattaataatcaaagtttcaatacaattgggtatatgaaaatagatagcgggactagcgagaaatgtggctt-ctt 29755036  T
Q  185 tgcgagagtgtgagccaccacattagcttat-gccgaacaaactccacccgagagttggtaaacttgaacgagagcaaagaccgggaagtcgtgatgatg 283  Q
    ||| ||||||||||||||||||||||||| | ||| |||||||||||||| |||||||||||||||| || | ||||| ||||||||||   ||||||||    
T  29755037 tgcaagagtgtgagccaccacattagcttgtcgcctaacaaactccaccctagagttggtaaacttggacaaaagcaaggaccgggaagctatgatgatg 29755136  T
Q  284 ttaccaaattctgttatgtcttcctgacccgaata 318  Q
    || |||||||| ||||||||||||  |||||||||    
T  29755137 tttccaaattccgttatgtcttcccaacccgaata 29755171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 89 - 329
Target Start/End: Complemental strand, 26683629 - 26683384
Alignment:
Q  89 gaaaagtgcttaatgcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcg 188  Q
    ||||||||||||  | ||||||||||||||| |||||||||||||| || |||||||||||||||| | ||||||||| ||||||||||| ||||||||     
T  26683629 gaaaagtgcttatagaatttcattagtaatcgaagtttcaatacaactgagtatatgaaaataaatagcgggactagcaagaaatgtggcctcccctgca 26683530  T
Q  189 agagtgtgagccaccacattagcttat-gccgaacaaactccacccgagagttggtaaacttgaacgagagcaaagaccgggaagtcgtgatgatgttac 287  Q
    ||||| ||||||||||||||| ||| | || |||||||||||||||||||||||| ||||||| |||||||||||||| ||||||   |||| |||||||    
T  26683529 agagtatgagccaccacattaacttgtcgcggaacaaactccacccgagagttggaaaacttggacgagagcaaagacggggaagcaatgataatgttac 26683430  T
Q  288 caaattctgt----tatgtcttcctgacccgaatatagagcatctt 329  Q
    | | ||| ||    |||||||||| ||||||| || ||||||||||    
T  26683429 cgacttcagttatatatgtcttccagacccgagtaaagagcatctt 26683384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 104 - 318
Target Start/End: Original strand, 5335212 - 5335427
Alignment:
Q  104 catttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccacc 203  Q
    |||||||||| ||||||||||||||||| |||||| | |||||||||| || | | |||||||||||||||||||||||  ||| ||||||||||||| |    
T  5335212 catttcattaataatcaaagtttcaatataattggatttatgaaaatagatagcgagactagcgagaaatgtggcttcctttgcaagagtgtgagccaac 5335311  T
Q  204 acattagctt-atgccgaacaaactccacccgagagttggtaaacttgaacgagagcaaagaccgggaagtcgtgatgatgttaccaaattctgttatgt 302  Q
    ||||||||||  |||| |||||||||||||| |||||||||||||||| || | | ||||||| ||||||  ||||||||||| |||||||| |||||||    
T  5335312 acattagcttgttgcctaacaaactccaccctagagttggtaaacttggacaaaaacaaagactgggaagctgtgatgatgtttccaaattcagttatgt 5335411  T
Q  303 cttcctgacccgaata 318  Q
    ||||| ||||||||||    
T  5335412 cttcccgacccgaata 5335427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 115 - 285
Target Start/End: Original strand, 22864512 - 22864683
Alignment:
Q  115 taatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccaccacattagctt- 213  Q
    ||||||| |||||||||||||| ||||||| |||| |||| | ||||||||||| |||| |||| ||  |  ||||| | ||||||| || ||||| ||     
T  22864512 taatcaacgtttcaatacaattaggtatataaaaacaaatagcgggactagcgataaatatggcctcttcgacgagaatatgagccaacatattagtttg 22864611  T
Q  214 atgccgaacaaactccacccgagagttggtaaacttgaacgagagcaaagaccgggaagtcgtgatgatgtt 285  Q
     |||| |||||||| ||| |||||||||||||||||| |||| |||||||| | |||||  ||||| |||||    
T  22864612 ttgcctaacaaacttcactcgagagttggtaaacttggacgaaagcaaagatcaggaagcagtgataatgtt 22864683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 103 - 246
Target Start/End: Complemental strand, 36045055 - 36044911
Alignment:
Q  103 gcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccac 202  Q
    ||||||||||| |||| | || ||||||||| | ||| |||||||||||||| ||||||||||| || ||||||||||| ||| | ||| | ||||| ||    
T  36045055 gcatttcattaataataagagattcaatacattcgggcatatgaaaataaatggtgggactagctagtaatgtggcttctcctacaagaatatgagcaac 36044956  T
Q  203 cacattagcttat-gccgaacaaactccacccgagagttggtaaa 246  Q
    | |||| |||| | ||| |||||||| ||| | ||||||||||||    
T  36044955 ctcattggcttgtcgcctaacaaacttcactctagagttggtaaa 36044911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 116 - 250
Target Start/End: Complemental strand, 40300027 - 40299892
Alignment:
Q  116 aatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccaccacattagcttat 215  Q
    ||||||||| |||||||||   ||||||||||||||||    || |||||||||||||||||| ||  || ||||||| ||||| ||||| || |||| |    
T  40300027 aatcaaagtctcaatacaaagtggtatatgaaaataaacaacggaactagcgagaaatgtggcctcttctacgagagtatgagcaaccacgtttgcttgt 40299928  T
Q  216 -gccgaacaaactccacccgagagttggtaaacttg 250  Q
     ||| |||||||||||||||||||||| | ||||||    
T  40299927 cgcctaacaaactccacccgagagttgttgaacttg 40299892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 240
Target Start/End: Complemental strand, 22292517 - 22292379
Alignment:
Q  103 gcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccac 202  Q
    ||||||||||  |||| | ||||||||||||||||||||||| ||||||||  | ||||||||| | | | ||||| |||| ||| ||||  ||||| ||    
T  22292517 gcatttcatttataataagagtttcaatacaattgggtatattaaaataaacggcgggactagctaaagacgtggcctcccttgcaagagcatgagcaac 22292418  T
Q  203 cacattagcttat-gccgaacaaactccacccgagagtt 240  Q
    ||| || |||| | ||| |||||||||||||| ||||||    
T  22292417 cacgttggcttgtcgcctaacaaactccaccctagagtt 22292379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 178
Target Start/End: Complemental strand, 23976684 - 23976592
Alignment:
Q  86 agggaaaagtgcttaatgcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggc 178  Q
    |||||||||||||||  |||| |||||| |||||||||||||||||||  | ||||||  ||||||| |   ||||||| |||||||||||||    
T  23976684 agggaaaagtgcttatagcatatcattaataatcaaagtttcaatacatctaggtataataaaataagtaacgggactaacgagaaatgtggc 23976592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 242
Target Start/End: Complemental strand, 27493391 - 27493251
Alignment:
Q  103 gcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccac 202  Q
    ||||||||||  ||||||||| |||||||||||||||||||  | |||||| || ||||||||| |  || ||||| ||  |||||||||| |||||  |    
T  27493391 gcatttcatttataatcaaagattcaatacaattgggtataacataataaactgcgggactagctaataacgtggcctcttctgcgagagtatgagctgc 27493292  T
Q  203 cacattagcttat-gccgaacaaactccacccgagagttgg 242  Q
     ||||| |||| | ||  ||||||||||||| |||||||||    
T  27493291 tacattggcttgtcgcttaacaaactccacctgagagttgg 27493251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 94 - 153
Target Start/End: Original strand, 13948782 - 13948841
Alignment:
Q  94 gtgcttaatgcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaa 153  Q
    |||||||  |||| ||| || ||||||||||||||||||||| |||||||||||||||||    
T  13948782 gtgcttatagcatatcaataataatcaaagtttcaatacaatagggtatatgaaaataaa 13948841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 86 - 153
Target Start/End: Complemental strand, 18759870 - 18759803
Alignment:
Q  86 agggaaaagtgcttaatgcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaa 153  Q
    |||||||  ||||||  ||||||||||| |||| |||||||||||| |||||||||||| ||||||||    
T  18759870 agggaaacatgcttatagcatttcattaataataaaagtttcaatataattgggtatatcaaaataaa 18759803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1964 (Bit Score: 116; Significance: 1e-58; HSPs: 1)
Name: scaffold1964
Description:

Target: scaffold1964; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 151 - 329
Target Start/End: Complemental strand, 1202 - 1023
Alignment:
Q  151 aaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccaccacattagcttat-gccgaacaaactccacccgagagttggtaaactt 249  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  1202 aaatagtggaactagcgagaaatgtggcttcccctgcgagagtgtgagccaccacattagcttgtcgccgaacaaactccacccgagagttggtaaactt 1103  T
Q  250 gaacgagagcaaagaccgggaagtcgtgatgatgttaccaaattctgttatgtcttcctgacccgaatatagagcatctt 329  Q
    | |||||||||||||| || ||| |||||| ||||| |||||||| |||||||||||| ||||||| || ||||| ||||    
T  1102 ggacgagagcaaagactggaaagccgtgataatgttgccaaattcagttatgtcttcccgacccgagtaaagagcgtctt 1023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0643 (Bit Score: 104; Significance: 2e-51; HSPs: 1)
Name: scaffold0643
Description:

Target: scaffold0643; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 88 - 294
Target Start/End: Complemental strand, 1201 - 994
Alignment:
Q  88 ggaaaagtgcttaatgcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgc 187  Q
    ||||| |||||||  ||||||||||| ||||||||  |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||     
T  1201 ggaaaggtgcttatagcatttcattaataatcaaacattcaatacaattgggtatatgaaaataaatagcgggactagcgagaaatgtggcttcccttgt 1102  T
Q  188 gagagtgtgagccaccacattagcttat-gccgaacaaactccacccgagagttggtaaacttgaacgagagcaaagaccgggaagtcgtgatgatgtta 286  Q
     ||| |||||||||||||||||| || | ||| |||||||||||||| |||||||||||||||| || | |||| ||||||||| |  |||||||||||     
T  1101 aagattgtgagccaccacattagtttgtcgcctaacaaactccaccctagagttggtaaacttggacaaaagcatagaccgggaggctgtgatgatgttt 1002  T
Q  287 ccaaattc 294  Q
    ||||||||    
T  1001 ccaaattc 994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 104; Significance: 2e-51; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 92 - 326
Target Start/End: Original strand, 12370776 - 12371011
Alignment:
Q  92 aagtgcttaatgcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgaga 191  Q
    |||||||||  |||||| ||||||||||||||||||||||||||||| ||||||||||||||| |  |||||||| ||||||||||| |||||||| |||    
T  12370776 aagtgcttatagcattttattagtaatcaaagtttcaatacaattggatatatgaaaataaatagcaggactagcaagaaatgtggcctcccctgcaaga 12370875  T
Q  192 gtgtgagccaccacattagcttat-gccgaacaaactccacccgagagttggtaaacttgaacgagagcaaagaccgggaagtcgtgatgatgttaccaa 290  Q
    || |||| |||||||||||||| | |||||| |||||||||| ||||||||| ||||||| || | | |||||| ||||||   ||||| |||||||| |    
T  12370876 gtatgagtcaccacattagcttgtcgccgaataaactccaccagagagttggcaaacttggacaaaaacaaagatcgggaaacagtgataatgttaccga 12370975  T
Q  291 attctgttatgtcttcctgacccgaatatagagcat 326  Q
     ||| |||||||||||| ||||||| || |||||||    
T  12370976 cttcagttatgtcttcccgacccgagtaaagagcat 12371011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 115 - 178
Target Start/End: Complemental strand, 12749548 - 12749485
Alignment:
Q  115 taatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggc 178  Q
    |||||||||||||||||||||| |||| ||||||||||||   |||||||||||||||||||||    
T  12749548 taatcaaagtttcaatacaattaggtacatgaaaataaataacgggactagcgagaaatgtggc 12749485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 90 - 240
Target Start/End: Original strand, 18765582 - 18765733
Alignment:
Q  90 aaaagtgcttaatgcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcga 189  Q
    |||||||||||  ||||||||||  ||||  ||| |||||||||||||||||||  | ||||||||  || |||||| |  |||||||| || |  ||||    
T  18765582 aaaagtgcttatagcatttcatttataatagaagattcaatacaattgggtataacataataaattacggcactagctattaatgtggcctctctagcga 18765681  T
Q  190 gagtgtgagccaccacattagcttat-gccgaacaaactccacccgagagtt 240  Q
    |||| ||||| |||| ||| |||| | ||| |||||||||||||||||||||    
T  18765682 gagtatgagctaccaaattggcttgtcgcctaacaaactccacccgagagtt 18765733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 240
Target Start/End: Original strand, 6006037 - 6006175
Alignment:
Q  103 gcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccac 202  Q
    ||||||||||  |||| | ||||||||||||||||||||||| ||||||||  | ||||||||| | | | |||||||||| ||| ||||  ||||  ||    
T  6006037 gcatttcatttataataagagtttcaatacaattgggtatattaaaataaacggcgggactagctaaagacgtggcttcccttgcaagagcatgagaaac 6006136  T
Q  203 cacattagcttat-gccgaacaaactccacccgagagtt 240  Q
    ||| || |||| | ||| |||||||||||||| ||||||    
T  6006137 cacgttggcttgtcgcctaacaaactccaccctagagtt 6006175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 166
Target Start/End: Complemental strand, 31935395 - 31935315
Alignment:
Q  86 agggaaaagtgcttaatgcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagc 166  Q
    ||||||| |||||||  ||||||||||| | ||||||| |||||||||||||||||||| | ||||||  | |||||||||    
T  31935395 agggaaacgtgcttagagcatttcattaatcatcaaagattcaatacaattgggtatatcataataaacggcgggactagc 31935315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 208
Target Start/End: Original strand, 45680111 - 45680211
Alignment:
Q  108 tcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccaccacat 207  Q
    |||||| |||||||||| |||||||||||||||||| |||||||||    ||||||||| | ||||||||| || | ||| ||||| ||||| | |||||    
T  45680111 tcattaataatcaaagtctcaatacaattgggtatacgaaaataaacaaagggactagcaaaaaatgtggcctctcttgcaagagtatgagcaatcacat 45680210  T
Q  208 t 208  Q
    |    
T  45680211 t 45680211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 240
Target Start/End: Complemental strand, 17790290 - 17790152
Alignment:
Q  103 gcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccac 202  Q
    ||||||||||  |||| | ||||||||||||||||||||||| ||||||||  |   ||||||| | | | ||||| |||| ||| |||| |||||| ||    
T  17790290 gcatttcatttataataagagtttcaatacaattgggtatattaaaataaacggctagactagctaaagacgtggcctcccttgcaagagcgtgagcaac 17790191  T
Q  203 cacattagcttat-gccgaacaaactccacccgagagtt 240  Q
    ||| || |||| | ||| |||||||||||||| ||||||    
T  17790190 cacgttggcttgtcgcctaacaaactccaccctagagtt 17790152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 240
Target Start/End: Complemental strand, 19098732 - 19098594
Alignment:
Q  103 gcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccac 202  Q
    ||||||||||  |||| | ||||||||||||||||||||||| ||||||||  |   ||||||| | | | ||||| |||| ||| |||| |||||| ||    
T  19098732 gcatttcatttataataagagtttcaatacaattgggtatattaaaataaacggctagactagctaaagacgtggcctcccttgcaagagcgtgagcaac 19098633  T
Q  203 cacattagcttat-gccgaacaaactccacccgagagtt 240  Q
    ||| || |||| | ||| |||||||||||||| ||||||    
T  19098632 cacgttggcttgtcgcctaacaaactccaccctagagtt 19098594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 165
Target Start/End: Complemental strand, 36144864 - 36144802
Alignment:
Q  103 gcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactag 165  Q
    ||||||||||| |||  | || ||||||||||| |||||||||||||||||| ||||||||||    
T  36144864 gcatttcattaataacaagaggttcaatacaatcgggtatatgaaaataaatagtgggactag 36144802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 103 - 181
Target Start/End: Original strand, 35906934 - 35907012
Alignment:
Q  103 gcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttc 181  Q
    ||||||||||  |||| | ||||||||||||||||||||| | ||||||||  | ||||||||| || || ||||||||    
T  35906934 gcatttcattgataatgatagtttcaatacaattgggtatctcaaaataaacagcgggactagctagtaacgtggcttc 35907012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0650 (Bit Score: 78; Significance: 7e-36; HSPs: 1)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 86 - 246
Target Start/End: Original strand, 288 - 449
Alignment:
Q  86 agggaaaagtgcttaatgcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccct 185  Q
    |||||||||||||||    ||||||||||||||||||| |||||||||||||||||||||||||||||| | || |||||| |||||||||   ||||||    
T  288 agggaaaagtgcttataatatttcattagtaatcaaagcttcaatacaattgggtatatgaaaataaatagcggaactagcaagaaatgtgatctcccct 387  T
Q  186 gcgagagtgtgagccaccacattagcttat-gccgaacaaactccacccgagagttggtaaa 246  Q
     | ||||| ||| ||||||||||||||||| | ||| ||||||| |||||||||||||||||    
T  388 tcaagagtatgaaccaccacattagcttatcgtcgagcaaactctacccgagagttggtaaa 449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 4e-28; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 103 - 246
Target Start/End: Complemental strand, 48770250 - 48770106
Alignment:
Q  103 gcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccac 202  Q
    ||||||||||| |||| | |||||||||||| | |||||||||||||||||| |||||||||||  | ||||||||||| |||||||||   ||||| ||    
T  48770250 gcatttcattaataataagagtttcaatacattcgggtatatgaaaataaatggtgggactagcttgtaatgtggcttctcctgcgagaacatgagcaac 48770151  T
Q  203 cacattagcttat-gccgaacaaactccacccgagagttggtaaa 246  Q
    | ||||||||| | |||||| ||||||||||| ||||||||||||    
T  48770150 ctcattagcttctcgccgaataaactccaccctagagttggtaaa 48770106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 103 - 240
Target Start/End: Complemental strand, 32480353 - 32480215
Alignment:
Q  103 gcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccac 202  Q
    ||||||||||| |||| | |||||||||||||||| |||||| |||||||| || ||||||||| | | | ||||| |||| ||| ||||| ||||| ||    
T  32480353 gcatttcattaataataagagtttcaatacaattgagtatattaaaataaactgcgggactagctaaagacgtggcctcccttgcaagagtatgagcaac 32480254  T
Q  203 cacattagcttat-gccgaacaaactccacccgagagtt 240  Q
    ||| || |||| | ||| |||||||||||||| ||||||    
T  32480253 cacgttggcttgtcgcctaacaaactccaccctagagtt 32480215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 103 - 242
Target Start/End: Complemental strand, 15633367 - 15633227
Alignment:
Q  103 gcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccac 202  Q
    ||||||||||  |||| | ||||||||||||||||||||| | ||| ||||    ||||||||| || || |||||||| | ||| ||||| ||||| ||    
T  15633367 gcatttcattgataataatagtttcaatacaattgggtatttcaaagtaaacaacgggactagctagtaacgtggcttctcttgcaagagtatgagcaac 15633268  T
Q  203 cacattagcttat-gccgaacaaactccacccgagagttgg 242  Q
    | |||| |||| | ||| |||||||||||||||||||||||    
T  15633267 ctcattggcttgtcgcctaacaaactccacccgagagttgg 15633227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 166
Target Start/End: Complemental strand, 30502643 - 30502581
Alignment:
Q  104 catttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagc 166  Q
    |||||||||| |||| | |||||||||||||| |||||||| |||||||| || |||||||||    
T  30502643 catttcattaataataagagtttcaatacaatcgggtatatcaaaataaactgcgggactagc 30502581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 166
Target Start/End: Complemental strand, 3896621 - 3896540
Alignment:
Q  85 gagggaaaagtgcttaatgcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagc 166  Q
    ||||||||  ||||||  ||||||||||| |||| | |||||||||||||| |||||||| ||||||||  | |||||||||    
T  3896621 gagggaaacatgcttatagcatttcattaataataagagtttcaatacaatcgggtatatcaaaataaacggcgggactagc 3896540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 105 - 187
Target Start/End: Complemental strand, 27810672 - 27810590
Alignment:
Q  105 atttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgc 187  Q
    ||||||||  |||| | ||||||||||||| ||||||||| ||||||||  | | ||||||| || |||||||| ||||||||    
T  27810672 atttcatttataataatagtttcaatacaactgggtatattaaaataaacagcgagactagcaaggaatgtggcctcccctgc 27810590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 108 - 250
Target Start/End: Original strand, 73345 - 73488
Alignment:
Q  108 tcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagtgtgagccaccacat 207  Q
    |||||| |||||||||||||||||||||||||||||| ||| ||||    ||||||||| ||||| ||||  || |||||||| || | ||| |||||||    
T  73345 tcattaataatcaaagtttcaatacaattgggtatataaaagtaaacaacgggactagctagaaacgtggtctctcctgcgagtgtatcagcaaccacat 73444  T
Q  208 tagcttat-gccgaacaaactccacccgagagttggtaaacttg 250  Q
    | |||| |  |  | |||||||||||||||||||| | ||||||    
T  73445 ttgcttgtctcttagcaaactccacccgagagttgttgaacttg 73488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0303 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0303
Description:

Target: scaffold0303; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 94 - 240
Target Start/End: Complemental strand, 14344 - 14197
Alignment:
Q  94 gtgcttaatgcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagcgagaaatgtggcttcccctgcgagagt 193  Q
    |||||||  ||||||||||   |||| ||| ||||||||||||||||||| || |||||| |  || |||||| |  |||||||| || |  | || |||    
T  14344 gtgcttatagcatttcatttacaatcgaagattcaatacaattgggtataggataataaactacggcactagctaataatgtggcctctctagggacagt 14245  T
Q  194 gtgagccaccacattagcttat-gccgaacaaactccacccgagagtt 240  Q
    |||||| |||||||| |||| | ||| |||||||||||||||||||||    
T  14244 gtgagctaccacattggcttgtcgcctaacaaactccacccgagagtt 14197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 166
Target Start/End: Original strand, 62490 - 62553
Alignment:
Q  103 gcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaattgtgggactagc 166  Q
    ||||||||||| |||| | |||||||||||||||| |||||| ||||||||  | |||||||||    
T  62490 gcatttcattaataataagagtttcaatacaattgagtatattaaaataaacagcgggactagc 62553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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