View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20754_high_10 (Length: 237)
Name: NF20754_high_10
Description: NF20754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20754_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 21 - 220
Target Start/End: Complemental strand, 32869503 - 32869304
Alignment:
| Q |
21 |
tgtaatgtgttcatcataaggacattagatagaattttattgttcaagcagtgattttaagcatgttacgttaatatatttcctctcaatatccatggat |
120 |
Q |
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| T |
32869503 |
tgtaatgtgttcatcataaggacattagttcaaattttattgttcaagcagtgattttaagcatgttacattaatatatttcctctcaatatccatggat |
32869404 |
T |
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| Q |
121 |
atttgggttgatgatatcctctatctagccttatcattctgtgacttctctctaaccaaacacaaaccttctccaccaccttacacaatcatgtccttcg |
220 |
Q |
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| T |
32869403 |
atttgggttgatgatatcctctctctagccttatcattctccgacttctctctaaccaaacacaaaccttctccaccaccttacacaatcatgtccttcg |
32869304 |
T |
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Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 144 - 204
Target Start/End: Complemental strand, 45597456 - 45597396
Alignment:
| Q |
144 |
tctagccttatcattctgtgacttctctctaaccaaacacaaaccttctccaccaccttac |
204 |
Q |
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| T |
45597456 |
tctagccttatcgatctccgacttctctctaaccaaacacaaatcttctccaccgccttac |
45597396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 212
Target Start/End: Original strand, 29535226 - 29535269
Alignment:
| Q |
169 |
tctctaaccaaacacaaaccttctccaccaccttacacaatcat |
212 |
Q |
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| T |
29535226 |
tctctaaccaaatacaaaccttctccaccaccttactcaatcat |
29535269 |
T |
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