View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20754_low_2 (Length: 597)
Name: NF20754_low_2
Description: NF20754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20754_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-169; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 108 - 578
Target Start/End: Complemental strand, 33503058 - 33502581
Alignment:
| Q |
108 |
atgcagttggaaatggctctttctgttacagcaattggatgttctaagagtaaagtggagtcaggtaaaaatgccgattcatcaaatttctcttctccat |
207 |
Q |
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| T |
33503058 |
atgcagatggaaatggctctttctgttacagcagttggatgttccaagagtaaagtggggtcgggtgaaaatactgattcatcaaattcttcctgtccgt |
33502959 |
T |
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| Q |
208 |
aaaaaagaata----gagttataggtgaagaatcttcaacctccccccaactaatttctacagcagttggatcaatgaaagtaggatctcctttgtattg |
303 |
Q |
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| T |
33502958 |
taaaaagaataaaaagagttatagttgaagaatcttcaacctccccccaactaatttctacagcagttggatctatgaaagtaggatctcctttgtattg |
33502859 |
T |
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| Q |
304 |
ggcagaagtatattgcagtgaagaaaatt-gacaggaaagtaggtgtatatcgatgctgtgaattttattattgatggagaagacaagatcgaagccatg |
402 |
Q |
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| T |
33502858 |
ggcagaagtatattgcagtgaagaaaatttgacaggaaagtgggtgcatatggatgctgtgaatttgattattgatggagaagacaaggttgaagccatg |
33502759 |
T |
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| Q |
403 |
gttgctgcatgcaaaacatctctgagatatgttgttgcttttgctgtgcagggggccaaagatgtgacccgcaggtttgatattttctactttg--tata |
500 |
Q |
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| T |
33502758 |
gttgctgcatgcaaaacatctctgagatatgttgttgcttttgctgggcatggggccaaagatgtgacccgcaggtttgatattttttactctgtatata |
33502659 |
T |
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| Q |
501 |
tgttcagaatgaaaacagtgatggtttgcaacttcataaacactagtcaatttcttgatagctttgcataaacacttg |
578 |
Q |
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| T |
33502658 |
tgttcagcatgaatgcggtgatggtttgcaactctgttaacactagtcaacttcttgatagctttgcataaacacttg |
33502581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 9 - 108
Target Start/End: Complemental strand, 33503698 - 33503598
Alignment:
| Q |
9 |
gattatactctaacagtgatgttgcatgtaatgaaatgagtatgaaaaaggaaggataa-aatagtaataaagtaattaagttttgatcttcatagtgaa |
107 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||| |||||| | |||| | ||||||||||| | |||||| |||||||||| ||||| |
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| T |
33503698 |
gattatactctaacagtgacgttgcatgtaatgaaatgagtatgacaaaggatgaataatactagtaataaagcgaataagttgtgatcttcattgtgaa |
33503599 |
T |
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| Q |
108 |
a |
108 |
Q |
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| T |
33503598 |
a |
33503598 |
T |
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