View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20754_low_4 (Length: 456)
Name: NF20754_low_4
Description: NF20754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20754_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 180; Significance: 5e-97; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 13 - 203
Target Start/End: Complemental strand, 4365661 - 4365473
Alignment:
| Q |
13 |
aatatcaagacagttaactatttttatttagtgggtaacggttaaaaagtgaagccatagtcgacatgttttttgttttggtaacacgtaagcatggtac |
112 |
Q |
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| T |
4365661 |
aatatcaagacagttaactattt--atttagtgggtaacggttaaaaagtgaagccatagtcgacatgttttttgttttggtaacacgtaagcatggtac |
4365564 |
T |
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| Q |
113 |
cgacgagattttgatccttttgcacaattttcacttttcaacttggacccaccaaggttctcaacttcaactttcctaaaaatatctacta |
203 |
Q |
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| T |
4365563 |
cgacgagattttgatccttttgcacaattttcacttttcaacttggacccaccaaggttctcaacttcaactttcctaaaaatatctacta |
4365473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 252 - 424
Target Start/End: Complemental strand, 4365422 - 4365250
Alignment:
| Q |
252 |
ctctttagttctatatatattctctccctccagtctttaattgcaaacagaaataacacactagtagtnnnnnnnncataatcagagatagcactaaaaa |
351 |
Q |
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| T |
4365422 |
ctctttagttctatatatattctctccctccaatctttaattgcaaacagaaataacacactagtagtaaaaaaaacataatcagagatagcactaaaaa |
4365323 |
T |
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| Q |
352 |
tggctcaaacacttcgtttttcaatttccttgattaatcagaaagaaacaagagtcttaaaatctcttgatga |
424 |
Q |
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| T |
4365322 |
tggctcaaacacttcgtttttcaatttccttgattaatcagaaagaaacaagagtcttaaaatctcttgatga |
4365250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 351 - 424
Target Start/End: Complemental strand, 4372910 - 4372837
Alignment:
| Q |
351 |
atggctcaaacacttcgtttttcaatttccttgattaatcagaaagaaacaagagtcttaaaatctcttgatga |
424 |
Q |
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| T |
4372910 |
atggctctaacacttcgttcttcaatttccttcattcacaaaaaagaaacaagagtcttaaaatctcttgatga |
4372837 |
T |
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