View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20754_low_5 (Length: 260)
Name: NF20754_low_5
Description: NF20754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20754_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 1206296 - 1206539
Alignment:
| Q |
1 |
aaataataaaataaaaaccaccaaccagaatcatgatcttgttgttcatcatccgctggaattggcagtctgatgtgataacgcttcatgtaggcgttga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1206296 |
aaataataaaataaaaaccaccaaccagaatcatgatcttgttgttcatcatccgctggaattggcagtctgatgtgataacgcttcatgtaggcgttga |
1206395 |
T |
|
| Q |
101 |
atcctaaatgtttatgcctttaagtacctcattcgccctttctttgaattcttgaacttgaaatatgatgatttgataatcattcatgcaggtcttgaaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1206396 |
atcctaaatgtttatgcctttaagtacctcattcgccctttgtttgaattcttgaacttgaaatatgatgatttgataatcattcatgcaggtcttgaaa |
1206495 |
T |
|
| Q |
201 |
tcatttatgtctttcacaaattcatcatagtttcccctcttatc |
244 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1206496 |
tcatttatgtctttcacaaattcatcatagtttcccctcttatc |
1206539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 56 - 244
Target Start/End: Original strand, 30865206 - 30865404
Alignment:
| Q |
56 |
ctggaattggcagtctgatgtgataacgcttcatgtaggcgttgaatcc------taaatgtttatg-cctttaagtacctcattcgccctttctttgaa |
148 |
Q |
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|||| |||||||||||||| ||||| |||||||||||| ||||||||| ||||||||| || ||||| ||||| |||||| || ||| || ||| |
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| T |
30865206 |
ctgggattggcagtctgattcgataatgcttcatgtaggtgttgaatcccaagattaaatgtttctggcctttgagtacatcattcaccttttgttagaa |
30865305 |
T |
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| Q |
149 |
ttcttgaacttgaaatatgatgatttgataatcattc---atgcaggtcttgaaatcatttatgtctttcacaaattcatcatagtttcccctcttatc |
244 |
Q |
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| T |
30865306 |
ttcttgaactggaagtatgatgatttgatgatcattcttcatgcaggtcttgaaatcatctatgtctttcataaacccatcatactttccactcttatc |
30865404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 39 - 229
Target Start/End: Complemental strand, 3045776 - 3045579
Alignment:
| Q |
39 |
ttgttgttcatcatccgctggaattggcagtctgatgtgataacgcttcatgtaggcgttgaatcctaaa------tgtttatgcc-tttaagtacctca |
131 |
Q |
| |
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|||||| | |||||| |||||||||| |||||||| || || ||||||||||||| |||||||||||| | |||||||| |||||||||||| |
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| T |
3045776 |
ttgttgattatcatcgactggaattggtagtctgattcgacaatgcttcatgtaggcattgaatcctaaaattaaatatttatgccctttaagtacctcg |
3045677 |
T |
|
| Q |
132 |
ttcgccctttctttgaattcttgaacttgaaatatgatgatttgataatcattcatgcaggtcttgaaatcatttatgtctttcacaaattcatcata |
229 |
Q |
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||| ||||||||||||| ||||||||| ||| || ||| |||| ||| |||||||||||||||||||||| |||| |||| | ||| |||||||| |
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| T |
3045676 |
ttcaccctttctttgaactcttgaactggaagtacgattggatgatgatccttcatgcaggtcttgaaatcatctatggcttttataaactcatcata |
3045579 |
T |
|
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