View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20754_low_6 (Length: 251)
Name: NF20754_low_6
Description: NF20754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20754_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 94 - 246
Target Start/End: Complemental strand, 1206027 - 1205875
Alignment:
| Q |
94 |
gttcacatgactctagtagaataaactaatactgcatttgtacaaagaaatgtcatgaacattctagaatgtagtatttagaatatacctcccgcgtcta |
193 |
Q |
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| T |
1206027 |
gttcacatgactctagtagaataaactaatactgcatttctacaaggaaatgtcatgaacattctagaatgtagtatttagaatatacctcccccgtcta |
1205928 |
T |
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| Q |
194 |
taaatatgtaaacatatatgtacaattatattcaccactacatctctgctcct |
246 |
Q |
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| T |
1205927 |
taaatatgtaaacatatatgtacaattatattcaccactacatctctcctcct |
1205875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 1206140 - 1206065
Alignment:
| Q |
1 |
tgccttgattagaagaaaatagaggttatgttaaattcatgatgggaaagagcatggggatgaaaaactaattatt |
76 |
Q |
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| T |
1206140 |
tgccttgattagaagaaaatagaggttatgttaaattcatgatgggaaagagcatggggatgaaaaactaattatt |
1206065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 106 - 184
Target Start/End: Complemental strand, 37486379 - 37486301
Alignment:
| Q |
106 |
ctagtagaataaactaatactgcatttgtacaaagaaatgtcatgaacattctagaatgtagtatttagaatatacctc |
184 |
Q |
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| T |
37486379 |
ctagtagaataaattaatacgacattttcgtaaggaaatgtcatgaacattctagaatgtagtatctagaatatacctc |
37486301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 199
Target Start/End: Original strand, 2248693 - 2248738
Alignment:
| Q |
154 |
attctagaatgtagtatttagaatatacctcccgcgtctataaata |
199 |
Q |
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| T |
2248693 |
attctagaatgtagtatctagaatatacctcccacatctataaata |
2248738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 107 - 169
Target Start/End: Complemental strand, 10455991 - 10455929
Alignment:
| Q |
107 |
tagtagaataaactaatactgcatttgtacaaagaaatgtcatgaacattctagaatgtagta |
169 |
Q |
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| T |
10455991 |
tagtagaataaactaatactacatttatataagaaaatatcatgaacattctagaatttagta |
10455929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 180
Target Start/End: Complemental strand, 8942783 - 8942751
Alignment:
| Q |
148 |
atgaacattctagaatgtagtatttagaatata |
180 |
Q |
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| T |
8942783 |
atgaacattttagaatgtagtatttagaatata |
8942751 |
T |
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