View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20754_low_7 (Length: 250)

Name: NF20754_low_7
Description: NF20754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20754_low_7
NF20754_low_7
[»] chr7 (3 HSPs)
chr7 (1-165)||(32869571-32869735)
chr7 (26-66)||(31170227-31170267)
chr7 (17-61)||(30806121-30806165)
[»] chr4 (8 HSPs)
chr4 (3-69)||(12267516-12267582)
chr4 (26-69)||(922277-922320)
chr4 (26-69)||(46582632-46582675)
chr4 (26-72)||(2649756-2649802)
chr4 (29-71)||(29257020-29257062)
chr4 (9-58)||(30217608-30217657)
chr4 (112-164)||(53988190-53988242)
chr4 (26-58)||(55853137-55853169)
[»] chr8 (11 HSPs)
chr8 (26-69)||(10030410-10030453)
chr8 (32-65)||(13749270-13749303)
chr8 (26-69)||(5328596-5328639)
chr8 (16-61)||(10573107-10573152)
chr8 (26-59)||(13647486-13647519)
chr8 (26-59)||(13747911-13747944)
chr8 (32-61)||(44088990-44089019)
chr8 (26-58)||(7109319-7109351)
chr8 (26-58)||(7763968-7764000)
chr8 (26-58)||(10200710-10200742)
chr8 (26-58)||(37524236-37524268)
[»] chr5 (7 HSPs)
chr5 (26-63)||(32389663-32389700)
chr5 (26-61)||(1469731-1469766)
chr5 (32-69)||(3712101-3712138)
chr5 (9-61)||(6526056-6526108)
chr5 (26-74)||(18489099-18489147)
chr5 (26-58)||(19985509-19985541)
chr5 (29-61)||(41083569-41083601)
[»] chr6 (2 HSPs)
chr6 (16-54)||(8374409-8374447)
chr6 (26-75)||(14945536-14945585)
[»] chr3 (4 HSPs)
chr3 (29-70)||(53203821-53203862)
chr3 (16-64)||(15491856-15491904)
chr3 (29-61)||(20887801-20887833)
chr3 (26-58)||(50536861-50536893)
[»] chr2 (4 HSPs)
chr2 (17-58)||(23919497-23919538)
chr2 (32-69)||(38179280-38179317)
chr2 (17-61)||(33816436-33816480)
chr2 (29-73)||(35429634-35429678)
[»] chr1 (8 HSPs)
chr1 (112-149)||(12626503-12626540)
chr1 (26-58)||(14349653-14349685)
chr1 (26-58)||(18534010-18534042)
chr1 (29-65)||(33843227-33843263)
chr1 (29-65)||(33950716-33950752)
chr1 (26-58)||(35805320-35805352)
chr1 (26-70)||(39916948-39916992)
chr1 (26-58)||(52202320-52202352)
[»] scaffold0247 (1 HSPs)
scaffold0247 (26-70)||(21010-21054)


Alignment Details
Target: chr7 (Bit Score: 129; Significance: 7e-67; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 32869571 - 32869735
Alignment:
Q  1 cagggtgtgaactctaacccctccttatattatgcaatatctctaccaactgagctaaacttacagggacaaactcatttcatgttttattatatgtcaa 100  Q
    ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  32869571 cagggtgtgaactctgacccctccttatattatgcaatgtctctaccaactgagctaaacttatggggacaaactcatttcatgttttattatatgtcaa 32869670  T
Q  101 tttaagaagacgaaaaaattgtgttacattataagtcattttacaatattgataaaagattaatg 165  Q
    |||||||||||| ||||||||||||||||||||||||| |||||||||| ||||| | |||||||    
T  32869671 tttaagaagacggaaaaattgtgttacattataagtcactttacaatatcgataacatattaatg 32869735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 31170227 - 31170267
Alignment:
Q  26 tatattatgcaatatctctaccaactgagctaaacttacag 66  Q
    |||||||||||||||||||| ||||||||||||||| ||||    
T  31170227 tatattatgcaatatctctatcaactgagctaaactcacag 31170267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 30806165 - 30806121
Alignment:
Q  17 acccctccttatattatgcaatatctctaccaactgagctaaact 61  Q
    |||||| | |||| ||||||||||| |||||||||||||||||||    
T  30806165 acccctgcatataatatgcaatatccctaccaactgagctaaact 30806121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 12267582 - 12267516
Alignment:
Q  3 gggtgtgaactctaacccctccttatattatgcaatatctctaccaactgagctaaacttacaggga 69  Q
    |||| ||||||||| ||||| | |||| ||||||||||||||||||||||||||||| |||| ||||    
T  12267582 gggtttgaactctagcccctacatataatatgcaatatctctaccaactgagctaaatttacgggga 12267516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 69
Target Start/End: Original strand, 922277 - 922320
Alignment:
Q  26 tatattatgcaatatctctaccaactgagctaaacttacaggga 69  Q
    |||| ||||||||| |||||||||||||||||||||||| ||||    
T  922277 tataatatgcaatacctctaccaactgagctaaacttacgggga 922320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 69
Target Start/End: Complemental strand, 46582675 - 46582632
Alignment:
Q  26 tatattatgcaatatctctaccaactgagctaaacttacaggga 69  Q
    |||| ||||||||||| ||||||||||||||||||| |||||||    
T  46582675 tataatatgcaatatccctaccaactgagctaaactcacaggga 46582632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 72
Target Start/End: Original strand, 2649756 - 2649802
Alignment:
Q  26 tatattatgcaatatctctaccaactgagctaaacttacagggacaa 72  Q
    ||||||||||| | || |||||||||||||||||||||| |||||||    
T  2649756 tatattatgcattgtccctaccaactgagctaaacttacggggacaa 2649802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 71
Target Start/End: Original strand, 29257020 - 29257062
Alignment:
Q  29 attatgcaatatctctaccaactgagctaaacttacagggaca 71  Q
    |||||||||||||||| ||||||||||||| || |||||||||    
T  29257020 attatgcaatatctctgccaactgagctaacctcacagggaca 29257062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 30217657 - 30217608
Alignment:
Q  9 gaactctaacccctccttatattatgcaatatctctaccaactgagctaa 58  Q
    |||||||| ||||| | |||| ||||||||||| ||||||||||||||||    
T  30217657 gaactctagcccctgcatataatatgcaatatccctaccaactgagctaa 30217608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 164
Target Start/End: Original strand, 53988190 - 53988242
Alignment:
Q  112 gaaaaaattgtgttacattataagtcattttacaatattgataaaagattaat 164  Q
    ||||||| ||| ||| ||||||||||||||||||||| | |||||| ||||||    
T  53988190 gaaaaaaatgtcttaaattataagtcattttacaatactaataaaatattaat 53988242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 58
Target Start/End: Original strand, 55853137 - 55853169
Alignment:
Q  26 tatattatgcaatatctctaccaactgagctaa 58  Q
    |||| ||||||||||||||||||||||||||||    
T  55853137 tataatatgcaatatctctaccaactgagctaa 55853169  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 69
Target Start/End: Complemental strand, 10030453 - 10030410
Alignment:
Q  26 tatattatgcaatatctctaccaactgagctaaacttacaggga 69  Q
    |||| ||||||||||||||||||||||||||||||| |||||||    
T  10030453 tataatatgcaatatctctaccaactgagctaaactcacaggga 10030410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 65
Target Start/End: Original strand, 13749270 - 13749303
Alignment:
Q  32 atgcaatatctctaccaactgagctaaacttaca 65  Q
    ||||||||||||||||||||||||||||||||||    
T  13749270 atgcaatatctctaccaactgagctaaacttaca 13749303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 69
Target Start/End: Original strand, 5328596 - 5328639
Alignment:
Q  26 tatattatgcaatatctctaccaactgagctaaacttacaggga 69  Q
    |||| ||||||||||| |||||||||||||||| ||||||||||    
T  5328596 tataatatgcaatatccctaccaactgagctaagcttacaggga 5328639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 10573152 - 10573107
Alignment:
Q  16 aacccctccttatattatgcaatatctctaccaactgagctaaact 61  Q
    ||||||| | |||| ||||||||||| |||||||||||||||||||    
T  10573152 aacccctgcatataatatgcaatatccctaccaactgagctaaact 10573107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 59
Target Start/End: Original strand, 13647486 - 13647519
Alignment:
Q  26 tatattatgcaatatctctaccaactgagctaaa 59  Q
    |||| |||||||||||||||||||||||||||||    
T  13647486 tataatatgcaatatctctaccaactgagctaaa 13647519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 59
Target Start/End: Original strand, 13747911 - 13747944
Alignment:
Q  26 tatattatgcaatatctctaccaactgagctaaa 59  Q
    |||| |||||||||||||||||||||||||||||    
T  13747911 tataatatgcaatatctctaccaactgagctaaa 13747944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 61
Target Start/End: Original strand, 44088990 - 44089019
Alignment:
Q  32 atgcaatatctctaccaactgagctaaact 61  Q
    ||||||||||||||||||||||||||||||    
T  44088990 atgcaatatctctaccaactgagctaaact 44089019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 58
Target Start/End: Original strand, 7109319 - 7109351
Alignment:
Q  26 tatattatgcaatatctctaccaactgagctaa 58  Q
    |||| ||||||||||||||||||||||||||||    
T  7109319 tataatatgcaatatctctaccaactgagctaa 7109351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 58
Target Start/End: Original strand, 7763968 - 7764000
Alignment:
Q  26 tatattatgcaatatctctaccaactgagctaa 58  Q
    |||| ||||||||||||||||||||||||||||    
T  7763968 tataatatgcaatatctctaccaactgagctaa 7764000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 58
Target Start/End: Original strand, 10200710 - 10200742
Alignment:
Q  26 tatattatgcaatatctctaccaactgagctaa 58  Q
    |||| ||||||||||||||||||||||||||||    
T  10200710 tataatatgcaatatctctaccaactgagctaa 10200742  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 58
Target Start/End: Original strand, 37524236 - 37524268
Alignment:
Q  26 tatattatgcaatatctctaccaactgagctaa 58  Q
    |||| ||||||||||||||||||||||||||||    
T  37524236 tataatatgcaatatctctaccaactgagctaa 37524268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 63
Target Start/End: Original strand, 32389663 - 32389700
Alignment:
Q  26 tatattatgcaatatctctaccaactgagctaaactta 63  Q
    |||| |||||||||||||||||||||||||||||||||    
T  32389663 tataatatgcaatatctctaccaactgagctaaactta 32389700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 61
Target Start/End: Complemental strand, 1469766 - 1469731
Alignment:
Q  26 tatattatgcaatatctctaccaactgagctaaact 61  Q
    |||| |||||||||||||||||||||||||||||||    
T  1469766 tataatatgcaatatctctaccaactgagctaaact 1469731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 69
Target Start/End: Original strand, 3712101 - 3712138
Alignment:
Q  32 atgcaatatctctaccaactgagctaaacttacaggga 69  Q
    ||||||||||||||||||||||||||| ||||| ||||    
T  3712101 atgcaatatctctaccaactgagctaagcttacgggga 3712138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 6526108 - 6526056
Alignment:
Q  9 gaactctaacccctccttatattatgcaatatctctaccaactgagctaaact 61  Q
    |||||| | ||||| | |||| ||| |||||||||||||||||||||||||||    
T  6526108 gaactccagcccctgcatataatatccaatatctctaccaactgagctaaact 6526056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 74
Target Start/End: Original strand, 18489099 - 18489147
Alignment:
Q  26 tatattatgcaatatctctaccaactgagctaaacttacagggacaaac 74  Q
    ||||||||||| | ||| |||||||||||||||||| ||| ||||||||    
T  18489099 tatattatgcattgtctataccaactgagctaaactcacaaggacaaac 18489147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 58
Target Start/End: Complemental strand, 19985541 - 19985509
Alignment:
Q  26 tatattatgcaatatctctaccaactgagctaa 58  Q
    |||||||||||||||| ||||||||||||||||    
T  19985541 tatattatgcaatatccctaccaactgagctaa 19985509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 61
Target Start/End: Original strand, 41083569 - 41083601
Alignment:
Q  29 attatgcaatatctctaccaactgagctaaact 61  Q
    |||||||||| ||||||||||||||||||||||    
T  41083569 attatgcaatgtctctaccaactgagctaaact 41083601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 54
Target Start/End: Complemental strand, 8374447 - 8374409
Alignment:
Q  16 aacccctccttatattatgcaatatctctaccaactgag 54  Q
    ||||||| | |||||||||||||||||||||||||||||    
T  8374447 aacccctacatatattatgcaatatctctaccaactgag 8374409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 75
Target Start/End: Original strand, 14945536 - 14945585
Alignment:
Q  26 tatattatgcaatatctctaccaactgagctaaacttacagggacaaact 75  Q
    ||||||||||| | |||||| |||||||||||| || |||||||||||||    
T  14945536 tatattatgcactgtctctatcaactgagctaagctcacagggacaaact 14945585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 70
Target Start/End: Complemental strand, 53203862 - 53203821
Alignment:
Q  29 attatgcaatatctctaccaactgagctaaacttacagggac 70  Q
    ||||||||||||| |||||||||||||||| ||||| |||||    
T  53203862 attatgcaatatccctaccaactgagctaatcttacggggac 53203821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 15491904 - 15491856
Alignment:
Q  16 aacccctccttatattatgcaatatctctaccaactgagctaaacttac 64  Q
    ||||||| | |||| |||||||||| ||||||||||||||||| |||||    
T  15491904 aacccctgcatataatatgcaatatttctaccaactgagctaatcttac 15491856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 61
Target Start/End: Original strand, 20887801 - 20887833
Alignment:
Q  29 attatgcaatatctctaccaactgagctaaact 61  Q
    ||||||||||||| |||||||||||||||||||    
T  20887801 attatgcaatatccctaccaactgagctaaact 20887833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 58
Target Start/End: Original strand, 50536861 - 50536893
Alignment:
Q  26 tatattatgcaatatctctaccaactgagctaa 58  Q
    |||| ||||||||||||||||||||||||||||    
T  50536861 tataatatgcaatatctctaccaactgagctaa 50536893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 23919497 - 23919538
Alignment:
Q  17 acccctccttatattatgcaatatctctaccaactgagctaa 58  Q
    |||||||| ||||||||||||| || ||||||||||||||||    
T  23919497 acccctccatatattatgcaatgtccctaccaactgagctaa 23919538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 69
Target Start/End: Original strand, 38179280 - 38179317
Alignment:
Q  32 atgcaatatctctaccaactgagctaaacttacaggga 69  Q
    |||||||||| ||||||||||||||||||| |||||||    
T  38179280 atgcaatatccctaccaactgagctaaactcacaggga 38179317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 33816436 - 33816480
Alignment:
Q  17 acccctccttatattatgcaatatctctaccaactgagctaaact 61  Q
    |||||| | |||| |||||||||||||||||||||||| ||||||    
T  33816436 acccctgcatataatatgcaatatctctaccaactgaggtaaact 33816480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 35429634 - 35429678
Alignment:
Q  29 attatgcaatatctctaccaactgagctaaacttacagggacaaa 73  Q
    |||||||||| ||||||||||||||||||| || || ||||||||    
T  35429634 attatgcaatgtctctaccaactgagctaagctcacggggacaaa 35429678  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 149
Target Start/End: Complemental strand, 12626540 - 12626503
Alignment:
Q  112 gaaaaaattgtgttacattataagtcattttacaatat 149  Q
    ||||||||||| ||| ||||||||||||||||||||||    
T  12626540 gaaaaaattgttttaaattataagtcattttacaatat 12626503  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 58
Target Start/End: Complemental strand, 14349685 - 14349653
Alignment:
Q  26 tatattatgcaatatctctaccaactgagctaa 58  Q
    |||| ||||||||||||||||||||||||||||    
T  14349685 tataatatgcaatatctctaccaactgagctaa 14349653  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 58
Target Start/End: Complemental strand, 18534042 - 18534010
Alignment:
Q  26 tatattatgcaatatctctaccaactgagctaa 58  Q
    |||| ||||||||||||||||||||||||||||    
T  18534042 tataatatgcaatatctctaccaactgagctaa 18534010  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 65
Target Start/End: Original strand, 33843227 - 33843263
Alignment:
Q  29 attatgcaatatctctaccaactgagctaaacttaca 65  Q
    ||||||||||||||||| |||||||||||| ||||||    
T  33843227 attatgcaatatctctatcaactgagctaagcttaca 33843263  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 65
Target Start/End: Complemental strand, 33950752 - 33950716
Alignment:
Q  29 attatgcaatatctctaccaactgagctaaacttaca 65  Q
    ||||||||||||||||| |||||||||||| ||||||    
T  33950752 attatgcaatatctctatcaactgagctaagcttaca 33950716  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 58
Target Start/End: Original strand, 35805320 - 35805352
Alignment:
Q  26 tatattatgcaatatctctaccaactgagctaa 58  Q
    ||||||||||| |||||||||||||||||||||    
T  35805320 tatattatgcattatctctaccaactgagctaa 35805352  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 39916992 - 39916948
Alignment:
Q  26 tatattatgcaatatctctaccaactgagctaaacttacagggac 70  Q
    ||||||||||| | ||||||||||||||| ||||||||| |||||    
T  39916992 tatattatgcattgtctctaccaactgagttaaacttacggggac 39916948  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 58
Target Start/End: Original strand, 52202320 - 52202352
Alignment:
Q  26 tatattatgcaatatctctaccaactgagctaa 58  Q
    ||||||||||| |||||||||||||||||||||    
T  52202320 tatattatgcattatctctaccaactgagctaa 52202352  T

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Target: scaffold0247 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 21010 - 21054
Alignment:
Q  26 tatattatgcaatatctctaccaactgagctaaacttacagggac 70  Q
    |||||||| || |||| ||||||||||||||||||||||| ||||    
T  21010 tatattatccattatccctaccaactgagctaaacttacaaggac 21054  T

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