View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20754_low_8 (Length: 248)

Name: NF20754_low_8
Description: NF20754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20754_low_8
NF20754_low_8
[»] chr4 (4 HSPs)
chr4 (26-239)||(1990828-1991041)
chr4 (32-240)||(26439703-26439911)
chr4 (30-229)||(20357025-20357224)
chr4 (47-127)||(16878976-16879057)
[»] chr3 (3 HSPs)
chr3 (29-240)||(3297144-3297355)
chr3 (27-240)||(11004065-11004278)
chr3 (30-212)||(43772914-43773095)
[»] chr1 (1 HSPs)
chr1 (32-229)||(9022189-9022386)
[»] scaffold0014 (1 HSPs)
scaffold0014 (56-236)||(11193-11373)
[»] chr8 (3 HSPs)
chr8 (30-236)||(44609064-44609269)
chr8 (41-244)||(13145131-13145332)
chr8 (38-167)||(26378280-26378411)
[»] chr2 (2 HSPs)
chr2 (33-236)||(1499600-1499803)
chr2 (31-236)||(1500653-1500858)
[»] chr7 (1 HSPs)
chr7 (38-145)||(8482532-8482640)


Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 26 - 239
Target Start/End: Original strand, 1990828 - 1991041
Alignment:
Q  26 tcccttagagtatgtttggatagagtattttaatgagggaatgtaattttttggagaatttaaattgacttgacccaaattccattgtttgggaaaatat 125  Q
    ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  1990828 tcccttagagtgtgtttggataaagtattttaatgagggaatgtaattttttggagaatttaaattgacttgacccaaattctattgtttgggaaaatat 1990927  T
Q  126 ttaagtcatttttaaaattcaaagcattttgataagaatttctcttttgcaaaatttaaaggatttaaaataacacctaaaatacaaaaatttcacaatt 225  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1990928 ttaagtcatttttaaaattcaaagcattttgataagaatttctcttttccaaaatttaaaggatttaaaataacacctaaaatacaaaaatttcacaatt 1991027  T
Q  226 ctctgtcatttcat 239  Q
    ||||||||||||||    
T  1991028 ctctgtcatttcat 1991041  T

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Target: chr4; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 32 - 240
Target Start/End: Complemental strand, 26439911 - 26439703
Alignment:
Q  32 agagtatgtttggatagagtattttaatgagggaatgtaattttttggagaatttaaattgacttgacccaaattccattgtttgggaaaatatttaagt 131  Q
    ||||| |||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  26439911 agagtgtgtttgaatagagtattttaatgaggaaatgtaattttttagagaatttaaattgacttgacccaaattctattgtttggaaaaatatttaagt 26439812  T
Q  132 catttttaaaattcaaagcattttgataagaatttctcttttgcaaaatttaaaggatttaaaataacacctaaaatacaaaaatttcacaattctctgt 231  Q
    |||||||||||||||| |||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||    
T  26439811 catttttaaaattcaaggcatttagataagaatttttcttttgcaaaatttgaaggatttaaaataacacctaaaacacaaaaatttcacaattctctgt 26439712  T
Q  232 catttcatc 240  Q
    |||||||||    
T  26439711 catttcatc 26439703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 30 - 229
Target Start/End: Original strand, 20357025 - 20357224
Alignment:
Q  30 ttagagtatgtttggatagagtattttaatgagggaatgtaattttttggagaatttaaattgacttgacccaaattccattgtttgggaaaatatttaa 129  Q
    ||||||| ||||||||||||| ||||||||||||||| ||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||||    
T  20357025 ttagagtgtgtttggatagagcattttaatgagggaaagtaattttttgaaatatttaaattgacttgacccaaattccattgtttgggaaaatatttaa 20357124  T
Q  130 gtcatttttaaaattcaaagcattttgataagaatttctcttttgcaaaatttaaaggatttaaaataacacctaaaatacaaaaatttcacaattctct 229  Q
     ||||||||||||||||| |||||| ||||||||||| ||||||||||||||| | ||||||||||||||||||||||||| ||||||||| ||||||||    
T  20357125 ctcatttttaaaattcaaggcatttagataagaatttttcttttgcaaaatttgatggatttaaaataacacctaaaataccaaaatttcagaattctct 20357224  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 127
Target Start/End: Original strand, 16878976 - 16879057
Alignment:
Q  47 agagtattttaatgagggaatgtaat-tttttggagaatttaaattgacttgacccaaattccattgtttgggaaaatattt 127  Q
    |||| |||||||||||| |||| ||| ||||||||| |||| ||||||||||  |||||||| | | |||||||||||||||    
T  16878976 agagaattttaatgaggtaatgcaatctttttggagtatttgaattgacttggaccaaattctactctttgggaaaatattt 16879057  T

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Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 29 - 240
Target Start/End: Original strand, 3297144 - 3297355
Alignment:
Q  29 cttagagtatgtttggatagagtattttaatgagggaatgtaattttttggagaatttaaattgacttgacccaaattccattgtttgggaaaatattta 128  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  3297144 cttagagtgtgtttggatagagtattttaatgagggaatgtaattttttggagaatttaaattgacttgacccaaattccattgtttgggagaatattta 3297243  T
Q  129 agtcatttttaaaattcaaagcattttgataagaatttctcttttgcaaaatttaaaggatttaaaataacacctaaaatacaaaaatttcacaattctc 228  Q
    ||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  3297244 agtcatttttaaaattcaaggcatttagataagaatttctcttttgcaaaatttgaaggatttataataacacctaaaatacaaaaatttcacaattctc 3297343  T
Q  229 tgtcatttcatc 240  Q
    ||||||||||||    
T  3297344 tgtcatttcatc 3297355  T

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Target: chr3; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 27 - 240
Target Start/End: Complemental strand, 11004278 - 11004065
Alignment:
Q  27 cccttagagtatgtttggatagagtattttaatgagggaatgtaattttttggagaatttaaattgacttgacccaaattccattgtttgggaaaatatt 126  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11004278 ccctaagagtgtgtttggatagagtattttaatgagggaatgtaattttttggagaatttaaattgacttgacccaaattccattgtttgggaaaatatt 11004179  T
Q  127 taagtcatttttaaaattcaaagcattttgataagaatttctcttttgcaaaatttaaaggatttaaaataacacctaaaatacaaaaatttcacaattc 226  Q
    |||||||||||| |||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  11004178 taagtcattttttaaattcaaggcatttagataagaatttctcttttgcaaaatttgaaggatttaaaataacacctaaaatacaaacatttcacaattc 11004079  T
Q  227 tctgtcatttcatc 240  Q
    ||||||||||||||    
T  11004078 tctgtcatttcatc 11004065  T

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Target: chr3; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 30 - 212
Target Start/End: Original strand, 43772914 - 43773095
Alignment:
Q  30 ttagagtatgtttggatagagtattttaatgagggaatgtaattttttggagaatttaaattgacttgacccaaattccattgtttgggaaaatatttaa 129  Q
    ||||||| ||||||||||| | | |||||  |||||||||||| |||||||| |||| |||||| |||  | |||||| | |||||||||||||||||||    
T  43772914 ttagagtgtgtttggatagggaactttaactagggaatgtaatcttttggagtatttgaattgatttggactaaattc-actgtttgggaaaatatttaa 43773012  T
Q  130 gtcatttttaaaattcaaagcattttgataagaatttctcttttgcaaaatttaaaggatttaaaataacacctaaaatacaa 212  Q
     |||||||| ||||||||   |||| ||||||||||| |||||| |||||||||||| ||||||||||||||||||| |||||    
T  43773013 ttcatttttgaaattcaagatatttagataagaatttttcttttccaaaatttaaagcatttaaaataacacctaaattacaa 43773095  T

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Target: chr1 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 32 - 229
Target Start/End: Complemental strand, 9022386 - 9022189
Alignment:
Q  32 agagtatgtttggatagagtattttaatgagggaatgtaattttttggagaatttaaattgacttgacccaaattccattgtttgggaaaatatttaagt 131  Q
    ||||| |||||||||| || ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  9022386 agagtgtgtttggataaagcattttaatgagggaaagtaattttttggagtatttaaattgacttgacccaaattccattgtttgggaaaatatttaagt 9022287  T
Q  132 catttttaaaattcaaagcattttgataagaatttctcttttgcaaaatttaaaggatttaaaataacacctaaaatacaaaaatttcacaattctct 229  Q
    |||||||||||||||| |||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||| ||||||||    
T  9022286 catttttaaaattcaaggcatttagataagaatttctcttttgcaaaatttgatggatttaaaataacacctaaaataccaaaatttcagaattctct 9022189  T

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Target: scaffold0014 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 56 - 236
Target Start/End: Complemental strand, 11373 - 11193
Alignment:
Q  56 taatgagggaatgtaattttttggagaatttaaattgacttgacccaaattccattgtttgggaaaatatttaagtcatttttaaaattcaaagcatttt 155  Q
    ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||     
T  11373 taatgagggaaagtaattttttggagtatttaaattgacttgacccaaattccattgtttgggaaaatatttaagtcatttttaaaattcaaggcattta 11274  T
Q  156 gataagaatttctcttttgcaaaatttaaaggatttaaaataacacctaaaatacaaaaatttcacaattctctgtcattt 236  Q
    ||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  11273 gataagaatttttcttttgcaaaatttgatggatttaaaataacacctaaaatacaaaaatttcacaattctttgtcattt 11193  T

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Target: chr8 (Bit Score: 135; Significance: 2e-70; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 30 - 236
Target Start/End: Original strand, 44609064 - 44609269
Alignment:
Q  30 ttagagtatgtttggatagagtattttaatgagggaatgtaattttttggagaatttaaattgacttgacccaaattccattgtttgggaaaatatttaa 129  Q
    ||||||| |||||||||| || |||||| |||||||| ||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||    
T  44609064 ttagagtgtgtttggataaagcattttagtgagggaaagtaattttt-ggagtatttaaattgacttgacccaaattctattgtttgggaaaatatttaa 44609162  T
Q  130 gtcatttttaaaattcaaagcattttgataagaatttctcttttgcaaaatttaaaggatttaaaataacacctaaaatacaaaaatttcacaattctct 229  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||| ||| ||||||  | ||||||||    
T  44609163 gtcatttttaaaattcaaggcatttagataagaatttctcttttgcaaaatttgagggatttaaaataacacctaaattactaaaattgtaaaattctct 44609262  T
Q  230 gtcattt 236  Q
    |||||||    
T  44609263 gtcattt 44609269  T

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Target: chr8; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 41 - 244
Target Start/End: Original strand, 13145131 - 13145332
Alignment:
Q  41 ttggatagagtattttaatgagggaatgtaattttttggagaatttaaattgacttgacccaaattccattgtttgggaaaatatttaagtcatttttaa 140  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||    
T  13145131 ttggatagagaattttaatgagggaatgtaattttttggagtatttaaattgacttggcccatattccattgtttggaaaaatatttaagtcatttttaa 13145230  T
Q  141 aattcaaagcattttgataagaatttctcttttgcaaaatttaaaggatttaaaataacacctaaaatacaaaaatttcacaattctctgtcatttcatc 240  Q
    |||||||   |||| ||||||||  ||||| ||||||||||| |||  |||||||||||||||||  || |||| ||  | |||||||| |||||||||     
T  13145231 aattcaacagatttagataagaa--tctctcttgcaaaatttgaagagtttaaaataacacctaagttataaaatttgtaaaattctctctcatttcata 13145328  T
Q  241 tcac 244  Q
    ||||    
T  13145329 tcac 13145332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 38 - 167
Target Start/End: Original strand, 26378280 - 26378411
Alignment:
Q  38 tgtttggatagagtattttaatgagggaatgtaat-tttttggagaatttaaattgacttgacccaaattccattgtttgggaaaatatttaagtca-tt 135  Q
    ||||||||||||| |||||||||||| |||||||| |||||| || ||||||||||| ||| ||||||||||| |||||||||| |||||||||||| ||    
T  26378280 tgtttggatagagaattttaatgaggaaatgtaatatttttgaagtatttaaattgatttggcccaaattccactgtttgggaatatatttaagtcattt 26378379  T
Q  136 tttaaaattcaaagcattttgataagaatttc 167  Q
    |||||| ||||| |||||| ||||||||||||    
T  26378380 tttaaacttcaaggcatttagataagaatttc 26378411  T

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Target: chr2 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 33 - 236
Target Start/End: Original strand, 1499600 - 1499803
Alignment:
Q  33 gagtatgtttggatagagtattttaatgagggaatgtaattttttggagaatttaaattgacttgacccaaattccattgtttgggaaaatatttaagtc 132  Q
    |||| ||||||||||||| | || ||  |||||||| | |||||||||  |||||||||||||||  ||||||| || |||||| |||||||||||||||    
T  1499600 gagtgtgtttggatagagaaattgaactagggaatgcatttttttggactatttaaattgacttggaccaaatttcactgtttgagaaaatatttaagtc 1499699  T
Q  133 atttttaaaattcaaagcattttgataagaatttctcttttgcaaaatttaaaggatttaaaataacacctaaaatacaaaaatttcacaattctctgtc 232  Q
    |||  |||||||||| |||||| ||||||||||||||| ||||| ||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  1499700 attcctaaaattcaaggcatttagataagaatttctctcttgcataatttgaaggatttaaaataacacctaaattacaaaaatttcaaaattctctgtc 1499799  T
Q  233 attt 236  Q
    ||||    
T  1499800 attt 1499803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 31 - 236
Target Start/End: Complemental strand, 1500858 - 1500653
Alignment:
Q  31 tagagtatgtttggatagagtattttaatgagggaatgtaattttttggagaatttaaattgacttgacccaaattccattgtttgggaaaatatttaag 130  Q
    |||||| | ||| ||||| | ||||||||||| ||||||||||||| | || |||||||||||||||| ||||||| || |||||| |||| ||||||||    
T  1500858 tagagtgtatttagatagtgaattttaatgagagaatgtaatttttcgaagtatttaaattgacttgaaccaaatttcactgtttgagaaagtatttaag 1500759  T
Q  131 tcatttttaaaattcaaagcattttgataagaatttctcttttgcaaaatttaaaggatttaaaataacacctaaaatacaaaaatttcacaattctctg 230  Q
    |||||||||||||| || |||||| ||||||||||| ||| ||||||||||  | ||||||||||||| ||||||| |||||||| |||| |||||| ||    
T  1500758 tcatttttaaaatttaaggcatttagataagaatttttctcttgcaaaattagagggatttaaaataatacctaaattacaaaaagttcaaaattctttg 1500659  T
Q  231 tcattt 236  Q
    ||||||    
T  1500658 tcattt 1500653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 38 - 145
Target Start/End: Complemental strand, 8482640 - 8482532
Alignment:
Q  38 tgtttggatagagtattttaatgagggaatgtaattttttggagaatttaaattgacttgacccaaattccattgtttg-ggaaaatatttaagtcattt 136  Q
    ||||||||||||| |||||| | | |||||||||||||||| || |||||||||||  ||| ||||||||||   ||||   ||||||||||||||||||    
T  8482640 tgtttggatagagaattttatttaaggaatgtaattttttgaagtatttaaattgatctgaaccaaattccacgttttgaaaaaaatatttaagtcattt 8482541  T
Q  137 ttaaaattc 145  Q
    |||||||||    
T  8482540 ttaaaattc 8482532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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