View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20755_high_2 (Length: 468)
Name: NF20755_high_2
Description: NF20755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20755_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 110 - 458
Target Start/End: Original strand, 5067094 - 5067448
Alignment:
| Q |
110 |
gctttagagcttcaataaaatcatagtatcatcgtgatttggttaaacaccccatgatttttgtaatacattcaaaagggtgattaattaatgtgataaa |
209 |
Q |
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| T |
5067094 |
gcttcagagcttcaataaaatcacagtgtcatcgtgatttggttaaacaccccatgatttttgtaatacattcaaaagggtgattaattaatgtgataaa |
5067193 |
T |
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| Q |
210 |
tcacagtgccatgcaagggaagatgatcagagtagnnnnnnnnnn-------atcaagaaaatatgaagaaaatgaaaccaatggaatagtctaaaaaac |
302 |
Q |
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| T |
5067194 |
tcacagtgccatgcaagggaagatgatcaaagtagtttttttttttttttttatcaagaaaatatgaagaaaatgaaaccaatggaatagtctaaaaaac |
5067293 |
T |
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| Q |
303 |
caagtacataaaaaccactccactaacaagaaacatgaacataggaacattagactttatagaacacatgcaccaaagtaaccaatcaaatgatgatgat |
402 |
Q |
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| T |
5067294 |
caagtacataaaaaccactccactaacaagaaacatgaacataggaacattagac-ttatagaacacatgcaccaaagtaaccaatcaaatgatgatgat |
5067392 |
T |
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| Q |
403 |
ggnnnnnnnnnnnnnnnnncatgtgaagttgtttatgatttttaccttgacctttg |
458 |
Q |
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| T |
5067393 |
ggaaaaacaaaacaaaaaacatgtgaagttgtttatgatttttaccttgacctttg |
5067448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 5066962 - 5067046
Alignment:
| Q |
1 |
ctaattaacattagtttctcatattcacactttcatgatgtaaatgtcattttggattaacggtgaatttgacataatcacatat |
85 |
Q |
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| T |
5066962 |
ctaattaacattagtttctcatattcacactttcatgatgtaaatgtcattttggattaacggtgaatttgacataataacatat |
5067046 |
T |
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