View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20755_high_4 (Length: 378)
Name: NF20755_high_4
Description: NF20755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20755_high_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 17 - 365
Target Start/End: Original strand, 6505214 - 6505569
Alignment:
| Q |
17 |
catgttcaaggtttgatttgaatccagtaccttagttaagataaaagaaattcatatcatatcatttaagcattattgggtaaacaaattaaa-cgttta |
115 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
6505214 |
catgttcaaggtttgatttgaatccagtgccttagttaaactaaaagaaattcatatcatatcatctaagcattattgggtaaacaaattaaaacgttta |
6505313 |
T |
|
| Q |
116 |
caacaggaagcaattttcttagtcattgaatatgcataataggacatatttgcagcaagttgttgcttaaactgttggttgttgatcgttga------at |
209 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
6505314 |
tcataggaagcaattttcttagtcattgaatatgcataataggacatatttgcagcaagttgttgcttaaactgttggttgttgatcgttgaatatgcat |
6505413 |
T |
|
| Q |
210 |
acaaggagccattggcgcattctcatccctttaaataatataataatatgtcatcagacagttcaaaacatattataatgttttggttcaatatcacctc |
309 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
6505414 |
acgaggagccattggcgcattctcatccctttaaataatataataatatgtcttcagacagttcaaaacatattataatattttggttcaatatcacctc |
6505513 |
T |
|
| Q |
310 |
cttccaacgtttatctgaaacctttgtgaacgttggatttgagaaaacttctagaa |
365 |
Q |
| |
|
|||| || |||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
6505514 |
cttctaatgtttatctgaaacctttgtgaacgttggatttgacaaaacttctagaa |
6505569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University