View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20755_low_5 (Length: 338)

Name: NF20755_low_5
Description: NF20755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20755_low_5
NF20755_low_5
[»] chr2 (3 HSPs)
chr2 (116-287)||(557997-558168)
chr2 (57-116)||(6267468-6267527)
chr2 (62-116)||(11234963-11235017)
[»] chr5 (3 HSPs)
chr5 (16-113)||(37220714-37220811)
chr5 (16-116)||(30510545-30510645)
chr5 (16-116)||(30550885-30550985)
[»] chr7 (3 HSPs)
chr7 (16-116)||(43571694-43571794)
chr7 (16-116)||(37724385-37724485)
chr7 (58-116)||(5021071-5021129)
[»] chr4 (3 HSPs)
chr4 (16-116)||(42249887-42249988)
chr4 (16-83)||(35957513-35957580)
chr4 (67-116)||(20669078-20669127)
[»] scaffold0308 (1 HSPs)
scaffold0308 (62-116)||(16249-16303)
[»] chr3 (2 HSPs)
chr3 (62-116)||(9163628-9163682)
chr3 (62-116)||(19824294-19824348)
[»] chr6 (2 HSPs)
chr6 (57-113)||(4474285-4474341)
chr6 (82-116)||(33804388-33804422)
[»] chr1 (3 HSPs)
chr1 (57-116)||(41503400-41503459)
chr1 (83-116)||(39730296-39730329)
chr1 (79-116)||(44929840-44929877)


Alignment Details
Target: chr2 (Bit Score: 143; Significance: 4e-75; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 116 - 287
Target Start/End: Original strand, 557997 - 558168
Alignment:
Q  116 attttactttaatttttatgcaaatagatttctacgcaaagcatctttatcatttagaattgtaattctagcctctttatcaccagcaacttttatcata 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  557997 attttactttaatttttatgcaaatagatttctacgcaaagcatctttatcatttagaattgtaattctagcatctttatcaccagcaacttttatcata 558096  T
Q  216 gaataataaatcaattttatcgttaaatattttactttaatagttgtnnnnnnntatttcattacaacttaa 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |       ||||||||||||||||||    
T  558097 gaataataaatcaattttatcgttaaatattttactttaatagttataaaaaaatatttcattacaacttaa 558168  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 57 - 116
Target Start/End: Original strand, 6267468 - 6267527
Alignment:
Q  57 attaaccaatgcctaaacataacaaaggactagaccaccacatctgagtaccataaacaa 116  Q
    ||||||||||||||||||| | || | |||| ||||||||||||||||| ||| ||||||    
T  6267468 attaaccaatgcctaaacaaaccatatgacttgaccaccacatctgagttccaaaaacaa 6267527  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 116
Target Start/End: Complemental strand, 11235017 - 11234963
Alignment:
Q  62 ccaatgcctaaacataacaaaggactagaccaccacatctgagtaccataaacaa 116  Q
    |||||||| ||||| | ||||||||| ||||||||||||||||| ||| ||||||    
T  11235017 ccaatgcccaaacaaaccaaaggacttgaccaccacatctgagttccaaaaacaa 11234963  T

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Target: chr5 (Bit Score: 94; Significance: 8e-46; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 16 - 113
Target Start/End: Original strand, 37220714 - 37220811
Alignment:
Q  16 caaaatgttacaaagtccaaaacaaagaacaaaaaacaggaattaaccaatgcctaaacataacaaaggactagaccaccacatctgagtaccataaa 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  37220714 caaaatgttacaaagtccaaaacaaagaacaaaaaacaggaattaaccaatgcctagacataacaaaggactagaccaccacatctgagtaccataaa 37220811  T

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Target: chr5; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 16 - 116
Target Start/End: Complemental strand, 30510645 - 30510545
Alignment:
Q  16 caaaatgttacaaagtccaaaacaaagaacaaaaaacaggaattaaccaatgcctaaacataacaaaggactagaccaccacatctgagtaccataaaca 115  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  30510645 caaaatgttacagagtccaacacaaagaacaaaaaacaggaattaaccaatgcctaaacataacaaaggactagaccaccacatatgagtaccataaaca 30510546  T
Q  116 a 116  Q
    |    
T  30510545 a 30510545  T

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Target: chr5; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 16 - 116
Target Start/End: Complemental strand, 30550985 - 30550885
Alignment:
Q  16 caaaatgttacaaagtccaaaacaaagaacaaaaaacaggaattaaccaatgcctaaacataacaaaggactagaccaccacatctgagtaccataaaca 115  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  30550985 caaaatgttacagagtccaacacaaagaacaaaaaacaggaattaaccaatgcctaaacataacaaaggactagaccaccacatatgagtaccataaaca 30550886  T
Q  116 a 116  Q
    |    
T  30550885 a 30550885  T

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Target: chr7 (Bit Score: 81; Significance: 4e-38; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 16 - 116
Target Start/End: Original strand, 43571694 - 43571794
Alignment:
Q  16 caaaatgttacaaagtccaaaacaaagaacaaaaaacaggaattaaccaatgcctaaacataacaaaggactagaccaccacatctgagtaccataaaca 115  Q
    ||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  43571694 caaaatgttacaaagtctaaaacaaagaacaaaaagcagggattaaccaatgcctagacataacaaaggactagaccaccacatctgagtaccaaaaaca 43571793  T
Q  116 a 116  Q
    |    
T  43571794 a 43571794  T

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Target: chr7; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 16 - 116
Target Start/End: Complemental strand, 37724485 - 37724385
Alignment:
Q  16 caaaatgttacaaagtccaaaacaaagaacaaaaaacaggaattaaccaatgcctaaacataacaaaggactagaccaccacatctgagtaccataaaca 115  Q
    |||||||||||| ||||||||||||||||||||| ||||  ||||  ||||||||| | |||||| |||||| |||||||||||||||||||||||||||    
T  37724485 caaaatgttacatagtccaaaacaaagaacaaaacacagtgattatgcaatgcctagatataacataggacttgaccaccacatctgagtaccataaaca 37724386  T
Q  116 a 116  Q
    |    
T  37724385 a 37724385  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 58 - 116
Target Start/End: Complemental strand, 5021129 - 5021071
Alignment:
Q  58 ttaaccaatgcctaaacataacaaaggactagaccaccacatctgagtaccataaacaa 116  Q
    ||||||||| ||||||||||  | |||||| ||||||||||||||||||||||||||||    
T  5021129 ttaaccaattcctaaacatattataggacttgaccaccacatctgagtaccataaacaa 5021071  T

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Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 16 - 116
Target Start/End: Complemental strand, 42249988 - 42249887
Alignment:
Q  16 caaaatgttacaaa-gtccaaaacaaagaacaaaaaacaggaattaaccaatgcctaaacataacaaaggactagaccaccacatctgagtaccataaac 114  Q
    |||||||||||||| |||||||||||||||||||||  ||| |||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||    
T  42249988 caaaatgttacaaaagtccaaaacaaagaacaaaaagtagggattaaccaatacctaaacataacaaatgattagaccaccacatctgagtaccataaac 42249889  T
Q  115 aa 116  Q
    ||    
T  42249888 aa 42249887  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 35957580 - 35957513
Alignment:
Q  16 caaaatgttacaaagtccaaaacaaagaacaaaaaacaggaattaaccaatgcctaaacataacaaag 83  Q
    |||||||||||| |||||||||||||||||||||| |||| ||||||||||||||| |||||||||||    
T  35957580 caaaatgttacatagtccaaaacaaagaacaaaaagcagggattaaccaatgcctagacataacaaag 35957513  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 67 - 116
Target Start/End: Original strand, 20669078 - 20669127
Alignment:
Q  67 gcctaaacataacaaaggactagaccaccacatctgagtaccataaacaa 116  Q
    ||||||||||  || |||||| ||||||||||||||||||||||||||||    
T  20669078 gcctaaacatgtcataggacttgaccaccacatctgagtaccataaacaa 20669127  T

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Target: scaffold0308 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 116
Target Start/End: Original strand, 16249 - 16303
Alignment:
Q  62 ccaatgcctaaacataacaaaggactagaccaccacatctgagtaccataaacaa 116  Q
    ||||| |||||||||  || |||||| ||||||||||||||||||||||||||||    
T  16249 ccaattcctaaacatgtcataggacttgaccaccacatctgagtaccataaacaa 16303  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 116
Target Start/End: Complemental strand, 9163682 - 9163628
Alignment:
Q  62 ccaatgcctaaacataacaaaggactagaccaccacatctgagtaccataaacaa 116  Q
    ||||| |||||||||   |||||||| ||||||||||||||||||||||||||||    
T  9163682 ccaattcctaaacatgttaaaggacttgaccaccacatctgagtaccataaacaa 9163628  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 116
Target Start/End: Complemental strand, 19824348 - 19824294
Alignment:
Q  62 ccaatgcctaaacataacaaaggactagaccaccacatctgagtaccataaacaa 116  Q
    ||||| ||||||||||  | |||||| |||||||||||||||||| |||||||||    
T  19824348 ccaattcctaaacatattataggacttgaccaccacatctgagtatcataaacaa 19824294  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 113
Target Start/End: Original strand, 4474285 - 4474341
Alignment:
Q  57 attaaccaatgcctaaacataacaaaggactagaccaccacatctgagtaccataaa 113  Q
    |||| |||||||||||||||  || |||||| ||||||||| |||||||||||||||    
T  4474285 attatccaatgcctaaacatgccataggacttgaccaccacctctgagtaccataaa 4474341  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 116
Target Start/End: Original strand, 33804388 - 33804422
Alignment:
Q  82 aggactagaccaccacatctgagtaccataaacaa 116  Q
    |||||| ||||||||||||||||||||||||||||    
T  33804388 aggacttgaccaccacatctgagtaccataaacaa 33804422  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 57 - 116
Target Start/End: Complemental strand, 41503459 - 41503400
Alignment:
Q  57 attaaccaatgcctaaacataacaaaggactagaccaccacatctgagtaccataaacaa 116  Q
    ||||||||||||| ||||| | || |||||| ||||||||||||||||| ||| ||||||    
T  41503459 attaaccaatgcccaaacaaaccataggacttgaccaccacatctgagttccaaaaacaa 41503400  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 116
Target Start/End: Complemental strand, 39730329 - 39730296
Alignment:
Q  83 ggactagaccaccacatctgagtaccataaacaa 116  Q
    ||||| ||||||||||||||||||||||||||||    
T  39730329 ggacttgaccaccacatctgagtaccataaacaa 39730296  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 116
Target Start/End: Original strand, 44929840 - 44929877
Alignment:
Q  79 caaaggactagaccaccacatctgagtaccataaacaa 116  Q
    ||||||||| ||||||||||||||||||||| ||||||    
T  44929840 caaaggacttgaccaccacatctgagtaccaaaaacaa 44929877  T

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