View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20755_low_6 (Length: 338)
Name: NF20755_low_6
Description: NF20755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20755_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-138; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 18 - 304
Target Start/End: Original strand, 6047190 - 6047474
Alignment:
| Q |
18 |
catttctgcacataaagatgtttgtgaacatcttagtcaccactcctcgatatttctctgcaacattgggatcaaaagaaagttagctggtaataatttg |
117 |
Q |
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| T |
6047190 |
catttcagcacataaagatgtttgtgaacatcttagtcaccactcctcgttatttctctgcaacattgggatcaaaagaaagttagctggtaataatttg |
6047289 |
T |
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| Q |
118 |
ttacctttgtgaaacacattcacattttgcaacttgtgtttacctaataaatgtaagaagcagtttttcaatttctttggcttttatgtttgaaaatttg |
217 |
Q |
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| T |
6047290 |
ttatctttgggaaacacattcacattttgcaacttgtgtttacctaataaatgcaagaagcagtttttcaatttctttggcttttatgtttgaaaatttg |
6047389 |
T |
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| Q |
218 |
tggattatagtctgattctacttcttctatgttacgtaatgtgtgtagttggcaatttttccttgatttgatttaaattaaacataa |
304 |
Q |
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| T |
6047390 |
tggattatagtctgattctacttcttttatgttacgtaa--tgtatagttggcaatttttccttgatttgatttaaattaaacataa |
6047474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 40 - 292
Target Start/End: Original strand, 6043905 - 6044157
Alignment:
| Q |
40 |
tgtgaacatcttagtcaccactcctcgatatttctctgcaacattgggatcaaaagaaagttagctggtaataatttgttacctttgtgaaacacattca |
139 |
Q |
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| T |
6043905 |
tgtgaacatcttagtctcaactcctcgttatttctctgcaacattgggatcaaaagaaagatagctggtaataatttgttatctttgtgaaacacattca |
6044004 |
T |
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| Q |
140 |
cattttgcaacttgtgtttacctaataaatgtaagaagcagtttttcaatttctttggcttttatgtttgaaaatttgtggattatagtctgattc--ta |
237 |
Q |
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| T |
6044005 |
cagtttgcaacttgtgtttacctaataaatgtaagaagcaatttggcaatttctttggc-tttatgtttgaaaatcttaggattatagcctgattccgta |
6044103 |
T |
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| Q |
238 |
cttcttctatgttacgtaatgtgtgtagttggca-atttttccttgatttgattta |
292 |
Q |
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| T |
6044104 |
cttcttctaagtttcgtaa--agtgtagttgccattttttttcttgatttgattta |
6044157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 122 - 183
Target Start/End: Complemental strand, 6132160 - 6132095
Alignment:
| Q |
122 |
ctttgtgaaacacattcacattttgcaacttgtgtttacct----aataaatgtaagaagcagttt |
183 |
Q |
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| T |
6132160 |
ctttgtgaagcacattcattgtttgcaacttgtgtttatctgataaataaatgtaagaagcagttt |
6132095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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