View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20756_high_15 (Length: 334)
Name: NF20756_high_15
Description: NF20756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20756_high_15 |
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Alignment Details
Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 19 - 314
Target Start/End: Complemental strand, 30842661 - 30842366
Alignment:
| Q |
19 |
ataacctgtgtccaattgcataagcatcagtattaaacttgaatgtagacatagccttattattcaccaaataactgtcatccttggtaaataatgctaa |
118 |
Q |
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| T |
30842661 |
ataacttgtgtccaattgcataagcatcagtattaaacttgaatgtagacatagccttattattcaccaaataactgtcatccttagtaaataatgctaa |
30842562 |
T |
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| Q |
119 |
ctttgaacccttcttctccttaatctcgacaccttctttatcgaataaattcgaagaagaaacaaaattcttggaagaagaagaagaagcagcatcacgg |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30842561 |
ctttgaacccttcttctccttaatctcgacaccttctttatcgaataaactcgaagaagaaacaaaattcttggaagaagaagaagaagcagcatcacgg |
30842462 |
T |
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| Q |
219 |
gacttattagaactcgaaatgcaattagaagctttgagaatgaaatcatcaaatagaacatgaactttttcgtgttctaagagtttaagagcatct |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |
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| T |
30842461 |
gacttattagaactcgaaatgcaattagaagctttgagaatgaaatcatcaaacagaacatgaactttttcgagttctaagagtttaagagcatct |
30842366 |
T |
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