View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20756_high_20 (Length: 283)
Name: NF20756_high_20
Description: NF20756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20756_high_20 |
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| [»] scaffold0044 (1 HSPs) |
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Alignment Details
Target: scaffold0044 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: scaffold0044
Description:
Target: scaffold0044; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 13 - 256
Target Start/End: Original strand, 11265 - 11508
Alignment:
| Q |
13 |
aaaattaacactaaaaggataatgaattcagtttgacaatagtaagaatcagagtaagacatgcaaaacgatctagagaaagaaaggtgaaaatagttca |
112 |
Q |
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| T |
11265 |
aaaattaacactaaaaggataatgaattcagtttgacaatagtaagaatcagagtaagacatgcaaaacgatatagagaaagaaaggtgaaaatagtttc |
11364 |
T |
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| Q |
113 |
gattacctttattttgctcagtttagtatgttccttccatgtgttttgtagagaagtagatacccannnnnnnatctgctcatgattttgtttgaatata |
212 |
Q |
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| T |
11365 |
gattacctttattttgctcagtttagtatgttccttccatgtgttttgtagagaagtagatacccatttttttatctgctcgtgattttgtttgaatata |
11464 |
T |
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| Q |
213 |
aatatagagaaggttgaggagataaagaatacatggtccttttg |
256 |
Q |
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| T |
11465 |
aatatagagaaggttgaggagataaagaatacatggtccttttg |
11508 |
T |
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Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 56 - 124
Target Start/End: Original strand, 7295381 - 7295449
Alignment:
| Q |
56 |
aagaatcagagtaagacatgcaaaacgatctagagaaagaaaggtgaaaatagttcagattacctttat |
124 |
Q |
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| T |
7295381 |
aagaataagaataagacatgtaaaacgatctagagtaaaaaagatgaaaatagtttagattacctttat |
7295449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 258
Target Start/End: Original strand, 7295717 - 7295780
Alignment:
| Q |
195 |
tgattttgtttgaatataaatatagagaaggttgaggagataaagaatacatggtccttttggt |
258 |
Q |
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| T |
7295717 |
tgattttgtttggatacaaagacaaagagggttgaggagataaataatacatggttcttttggt |
7295780 |
T |
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Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 63 - 130
Target Start/End: Complemental strand, 47475103 - 47475031
Alignment:
| Q |
63 |
agagtaagacatgcaaaacgatctagagaaagaaa-----ggtgaaaatagttcagattacctttattttgct |
130 |
Q |
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| T |
47475103 |
agagtaagacatgcaaaaagatctagagaaaaaaaagtaaggtgaaaatagtttacattacctttattttgct |
47475031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 249
Target Start/End: Original strand, 10787519 - 10787567
Alignment:
| Q |
201 |
tgtttgaatataaatatagagaaggttgaggagataaagaatacatggt |
249 |
Q |
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| T |
10787519 |
tgtttggatagaaatatagagaaggttgaggagatagagaaaacatggt |
10787567 |
T |
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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 258
Target Start/End: Original strand, 3230951 - 3231014
Alignment:
| Q |
195 |
tgattttgtttgaatataaatatagagaaggttgaggagataaagaatacatggtccttttggt |
258 |
Q |
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| T |
3230951 |
tgattttgtttggatacaaagacaaagagggttgaggagataaataatacatggttcttttggt |
3231014 |
T |
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