View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20756_high_5 (Length: 486)
Name: NF20756_high_5
Description: NF20756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20756_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 15 - 246
Target Start/End: Complemental strand, 21838874 - 21838646
Alignment:
| Q |
15 |
aacaaaaatgtcaaatggatcacttttcctcaaaaataaaataaaatggatcactatattaattgtttaacattaggaattagttgttaaaatttatacc |
114 |
Q |
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| T |
21838874 |
aacaaaaatgtcaaatggatcacttttcctcaaaaaaaata-aaaatggatcactatattaattgcttaacattaggaattagttgttaaaatttatacc |
21838776 |
T |
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| Q |
115 |
atttcaaagaaatgacatattgtagcctaggcaacatgtcttttaaaatgttacaacatatatatgcctctagatatgtattagcaacatttttgtaaat |
214 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||| |
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| T |
21838775 |
atttcaaagaaatgacatattgtagcctaagcaacatgtcttttaaaatgttaca--aaatatatgcctctagagatgtattagcaacatttttgtaaat |
21838678 |
T |
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| Q |
215 |
gtaacaaccaaatgttgtcaaagggtataaat |
246 |
Q |
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| T |
21838677 |
gtaacaaccaaatgttgtcaaagggtataaat |
21838646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 387 - 486
Target Start/End: Original strand, 21838377 - 21838476
Alignment:
| Q |
387 |
cctctagttagcagttgcaagctttttaccctgcaaaacccagctatgagaggcctggttttcaattgtcgtccgcaatataaaagattttgaggtcttc |
486 |
Q |
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| T |
21838377 |
cctctagttagcagttgcaagcttttttccctgcaaaacccagctatgagaggcctggttttcaattgtcgtccgcaatataaaagattttgaggtcttc |
21838476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 282 - 353
Target Start/End: Original strand, 21838272 - 21838343
Alignment:
| Q |
282 |
aacttctttaaggttgtaaaatactatggatagataaagctgacaattaatatataaaacctctatcctttc |
353 |
Q |
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| T |
21838272 |
aacttctttaaggttgtaaaatactatggataaataaagctgacaattaatatataaaacctctatcctttc |
21838343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 455 - 484
Target Start/End: Complemental strand, 10978590 - 10978561
Alignment:
| Q |
455 |
tcgtccgcaatataaaagattttgaggtct |
484 |
Q |
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| T |
10978590 |
tcgtccgcaatataaaagattttgaggtct |
10978561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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