View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20756_low_1 (Length: 570)
Name: NF20756_low_1
Description: NF20756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20756_low_1 |
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| [»] chr2 (3 HSPs) |
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| [»] scaffold0406 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 358; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 136 - 570
Target Start/End: Complemental strand, 19292756 - 19292324
Alignment:
| Q |
136 |
agagataaacatcaactattgtcacaagaggaggatgtagaattttaaagattaattatgatacctattgacatcaatgcatggagata----atttcac |
231 |
Q |
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| T |
19292756 |
agagataaacatcaactattgtcacaagaggtggatgtagaattttaaagattaattatgatacctattgagatcaatgcatggagatatataatttcac |
19292657 |
T |
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| Q |
232 |
aaatgtaagatttagtgatgagaaactatactaggatttcttgaaatatgccttagggaggggttgaaattgatgcatatttcaagaacattttagagaa |
331 |
Q |
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| T |
19292656 |
aaatgtaagattttgcgatgagaaactatactaggatttcttggaatatgccttagggaggggttgaaattgatgcatatttcaagaacattttagagaa |
19292557 |
T |
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| Q |
332 |
atttagaatatatagcctaaagttgctacatatatttgtgtattgttctgctaaaaccaagattagcttataggctaaaaacatccatcataatttaaac |
431 |
Q |
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| T |
19292556 |
atttagaata----gcctaaagttgctacatat--ttgtgtattgttctgctaaaaccaagattagcttatagcctaaaaacatccatcacaatttaaac |
19292463 |
T |
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| Q |
432 |
ttgaaaagccaaacaaaaatctaaataagtccacttctagaagcaactttagaaacctataaatagacaaacatgtgtgcaattgtattcaaacctttga |
531 |
Q |
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| T |
19292462 |
ttgaaaagccaaacaaaaatctagataaatccacttctagaagcaactttagaaacctataaatagacaaacatgtgtgcaattgtattcaaacctttga |
19292363 |
T |
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| Q |
532 |
tatgtaatgccaaataatattgaaagcttcactaaactc |
570 |
Q |
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| T |
19292362 |
tatgtaatgccaaataatattgaaagcttcactaaactc |
19292324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 19293363 - 19293243
Alignment:
| Q |
1 |
aactccaaagggaatatcttcatgttgttgagtcggatatatgtttctctgctgataacaaatgcatatgttgcagcctttgagtttagtgtaggtacct |
100 |
Q |
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| T |
19293363 |
aactccaaagggaatatcttcatgttgttgagtcggatatatgtttctctgcttataacaaatgcatatgttgcagcctttgagtttagtgtaggtacct |
19293264 |
T |
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| Q |
101 |
ccacatacgcaacaaaaacta |
121 |
Q |
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| T |
19293263 |
ccacatacgcaacaaaaacta |
19293243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 488 - 538
Target Start/End: Complemental strand, 33798907 - 33798857
Alignment:
| Q |
488 |
ctataaatagacaaacatgtgtgcaattgtattcaaacctttgatatgtaa |
538 |
Q |
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| T |
33798907 |
ctataaatagataagcatatgtgcaattgtattcaagcctttgagatgtaa |
33798857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0406 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0406
Description:
Target: scaffold0406; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 486 - 563
Target Start/End: Original strand, 6313 - 6389
Alignment:
| Q |
486 |
acctataaatagacaaacatgtgtgcaattgtattcaaacctttgatatgtaatgccaaataatattgaaagcttcac |
563 |
Q |
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| T |
6313 |
acctataaatagacttatatgggtgaaattgtattcaagcctttgagatgcaatgtc-aataatattgaaggcttcac |
6389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 486 - 563
Target Start/End: Original strand, 51246655 - 51246731
Alignment:
| Q |
486 |
acctataaatagacaaacatgtgtgcaattgtattcaaacctttgatatgtaatgccaaataatattgaaagcttcac |
563 |
Q |
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| T |
51246655 |
acctataagtagacttatatgggtgcaattgtattcaagcctttgggatgtaatgtc-aataatattgaaggcttcac |
51246731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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