View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20756_low_12 (Length: 399)
Name: NF20756_low_12
Description: NF20756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20756_low_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 25 - 385
Target Start/End: Complemental strand, 44532351 - 44531991
Alignment:
| Q |
25 |
gttatatatattcccacaattccaatcacccttcaccttcactcaacataattcatttacttcattatttatacaagtcctttttgtataacttaatgtt |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44532351 |
gttatatatattcccacaattccaatcacccttcaccttcactcaacataattcatttacttcattatttatacaagtcctttttgtataacttaatgtt |
44532252 |
T |
|
| Q |
125 |
catggctacacaaaattgttcaaaatgtgtcatgttggtaacactactagtaacaattctctttgttcatccaacatcctcaacatcaagagggtctctc |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
44532251 |
catggctacacaaaattgttcaaaatgtgtcatgttggtaacactactagtaacaattctctttgttcatccaacattctcaacatcaagagggtctctc |
44532152 |
T |
|
| Q |
225 |
aaccatcaccaaatctctcaaggcgggttccgaatcactcttcgccacgttgattccggcaaaaacttgactaaactcgagcgcgttcaacatggcatta |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44532151 |
aaccatcaccaaatctctcaaggcgggttccgaatcactcttcgccacgttgattccggcaaaaacttgactaaactcgagcgcgttcaacatggcatta |
44532052 |
T |
|
| Q |
325 |
accggggacatagccgacttcaaagactaaatgcaatggtgttagcatcatccacaactga |
385 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44532051 |
accggggacatagccgacttcaaagactaaatgcaatggtgttagcatcatccacaactga |
44531991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University