View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20756_low_13 (Length: 398)

Name: NF20756_low_13
Description: NF20756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20756_low_13
NF20756_low_13
[»] chr6 (1 HSPs)
chr6 (1-398)||(2768602-2769002)


Alignment Details
Target: chr6 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 2768602 - 2769002
Alignment:
Q  1 taaataacatcttgttgaataaatcaaaataagccactgcatctcaaatttttcaataactttatctcaacttaaatcatataagcacttttttcataaa 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2768602 taaataacatcttgttgtataaatcaaaataagccactgcatctcaaatttttcaataactttatctcaacttaaatcatataagcacttttttcataaa 2768701  T
Q  101 tcaac-aacataaacttattcaaattgaaaagttaagcagaaaagcaattcaaacaacccttataaaagttgtaatttacagtattacagaaatttacaa 199  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2768702 tcaactaacataaacttattcaaattgaaaaattaagcagaaaagcaattcaaacaacccttataaaagttgtaatttacagtattacagaaatttacaa 2768801  T
Q  200 tcatataaaaacacaaagagg--nnnnnnnnnnnnnnncctttggagaagaagattgaggaaagtagtcatcagcatcaacatcataaccgtaaagttca 297  Q
    |||||||||||||||||||||                 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||||    
T  2768802 tcatataaaaacacaaagaggaaaaaaaaaatgaaaaacctttggagaagaagattgaggaaagtagtcatcagcatcaacatcataaccataccgttca 2768901  T
Q  298 agtaagatttattactattcactcgccaaaccatttcctgattctgcaaaatattcaacaaccccatcattttaaaccacaaaaaatcattaaaaaactg 397  Q
    |||||||||| || || |||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  2768902 agtaagatttttttctcttcactcgccaacccatttcctgattctgcaaaatattcaaaaaacccatcattttaaaccacaaaaaatcattaaaaaactg 2769001  T
Q  398 a 398  Q
    |    
T  2769002 a 2769002  T

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