View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20756_low_15 (Length: 342)
Name: NF20756_low_15
Description: NF20756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20756_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 19 - 330
Target Start/End: Complemental strand, 5921279 - 5920970
Alignment:
| Q |
19 |
tgttcgggagaaaggctttcttgcattggtacacaggtgaaggaatggatgagatggagttcactgaggctgagagcaacatgaatgatcttgtgtcgga |
118 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
5921279 |
tgttcaggagaaaggctttcttgcattggtacacaggtgaaggaatggatgagatggagttcactgaggctgagagcaacatgaatgatcttgtgtctga |
5921180 |
T |
|
| Q |
119 |
atatcaacagtatcaagatgctactgcagaggaggatgagtatgaagatgaagaggaggattatcagcaggaacatgatgagatgtgagcatgttgatgc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5921179 |
atatcaacagtatcaagatgctactgcagaggaggatgagtatgaagatgaagaggaggattatcagcaggaacatgatgagatgtgagcatgttgatgc |
5921080 |
T |
|
| Q |
219 |
tttttgcaatggataacacatatctgcaacttcctgttgccggttcgtaatctctgttgtaaggggatacttttgttccggctgttatgaaattgtttct |
318 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
5921079 |
tttttgcaatggataacac--atctgcaacttcctgttgccggttcgtaatctctgttgtaagggaatacttttgttccggctgttatgaaattgtttct |
5920982 |
T |
|
| Q |
319 |
ggttttcatttc |
330 |
Q |
| |
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|||||||||||| |
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| T |
5920981 |
ggttttcatttc |
5920970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 19 - 200
Target Start/End: Complemental strand, 5934739 - 5934558
Alignment:
| Q |
19 |
tgttcgggagaaaggctttcttgcattggtacacaggtgaaggaatggatgagatggagttcactgaggctgagagcaacatgaatgatcttgtgtcgga |
118 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
5934739 |
tgttcaggagaaaggctttcttgcattggtacacaggtgaaggaatggatgagatggagttcactgaggctgagagcaacatgaatgatcttgtgtcaga |
5934640 |
T |
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| Q |
119 |
atatcaacagtatcaagatgctactgcagaggaggatgagtatgaagatgaagaggaggattatcagcaggaacatgatgag |
200 |
Q |
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| T |
5934639 |
atatcaacagtatcaagatgctactgcagaggaggatgagtatgaagatgaagaggaggattatcagcaggaacatgatgag |
5934558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 19 - 172
Target Start/End: Original strand, 5532754 - 5532907
Alignment:
| Q |
19 |
tgttcgggagaaaggctttcttgcattggtacacaggtgaaggaatggatgagatggagttcactgaggctgagagcaacatgaatgatcttgtgtcgga |
118 |
Q |
| |
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||||| |||||||||||||||||||||||||||| |||||||| ||||| || ||||| |||||||||||||||||||||||||||||||| || | || |
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| T |
5532754 |
tgttcaggagaaaggctttcttgcattggtacactggtgaaggcatggacgaaatggaattcactgaggctgagagcaacatgaatgatctggttgctga |
5532853 |
T |
|
| Q |
119 |
atatcaacagtatcaagatgctactgcagaggaggatgagtatgaagatgaaga |
172 |
Q |
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||||||||||| |||||||| || || || ||||||||||||| ||| ||||| |
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| T |
5532854 |
gtatcaacagtaccaagatgccaccgctgatgaggatgagtatggagaagaaga |
5532907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 30 - 166
Target Start/End: Complemental strand, 38177052 - 38176916
Alignment:
| Q |
30 |
aaggctttcttgcattggtacacaggtgaaggaatggatgagatggagttcactgaggctgagagcaacatgaatgatcttgtgtcggaatatcaacagt |
129 |
Q |
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||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| ||||| |||||||||||| | ||| | || || || || | |
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| T |
38177052 |
aaggctttcttgcattggtacactggtgagggaatggatgaaatggagttcactgaggccgagagtaacatgaatgatttggtggcagagtaccagcaat |
38176953 |
T |
|
| Q |
130 |
atcaagatgctactgcagaggaggatgagtatgaaga |
166 |
Q |
| |
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| || ||||||||||| || ||||| ||||||||||| |
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| T |
38176952 |
accaggatgctactgctgatgaggaagagtatgaaga |
38176916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 244 - 324
Target Start/End: Complemental strand, 5934494 - 5934412
Alignment:
| Q |
244 |
gcaacttcctgttgccggttcgtaatctc--tgttgtaaggggatacttttgttccggctgttatgaaattgtttctggtttt |
324 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||| |||||| ||| ||||| ||||||| |||||||| ||||| |||| |
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| T |
5934494 |
gcaacttcctgttgccggttcataatctctttgttgttgggggatgcttatgttctggctgttctgaaattgattctgatttt |
5934412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 26 - 140
Target Start/End: Complemental strand, 40916340 - 40916226
Alignment:
| Q |
26 |
gagaaaggctttcttgcattggtacacaggtgaaggaatggatgagatggagttcactgaggctgagagcaacatgaatgatcttgtgtcggaatatcaa |
125 |
Q |
| |
|
||||||||| || ||||||||||| || | |||||||||||||||||||||||| |||||||||||||| || ||||||||| | || || ||||||||| |
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| T |
40916340 |
gagaaaggcatttttgcattggtatactgctgaaggaatggatgagatggagtttactgaggctgagagtaatatgaatgatttggtttctgaatatcaa |
40916241 |
T |
|
| Q |
126 |
cagtatcaagatgct |
140 |
Q |
| |
|
|| |||||||||||| |
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| T |
40916240 |
caatatcaagatgct |
40916226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 36 - 127
Target Start/End: Original strand, 45320547 - 45320638
Alignment:
| Q |
36 |
ttcttgcattggtacacaggtgaaggaatggatgagatggagttcactgaggctgagagcaacatgaatgatcttgtgtcggaatatcaaca |
127 |
Q |
| |
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|||||||||||||| || || |||||||||||||| ||||| || ||||| || || ||||| |||||||||||||| | ||||||||||| |
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| T |
45320547 |
ttcttgcattggtataccggagaaggaatggatgaaatggaatttactgaagcagaaagcaatatgaatgatcttgttgctgaatatcaaca |
45320638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 30 - 112
Target Start/End: Complemental strand, 11731908 - 11731826
Alignment:
| Q |
30 |
aaggctttcttgcattggtacacaggtgaaggaatggatgagatggagttcactgaggctgagagcaacatgaatgatcttgt |
112 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||| || ||||||||||||||||||||||| ||||||||||||||||| |
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| T |
11731908 |
aaggctttcttgcattggtacactggtgagggaatggacgaaatggagttcactgaggctgagagtaacatgaatgatcttgt |
11731826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 145
Target Start/End: Original strand, 34841829 - 34841949
Alignment:
| Q |
25 |
ggagaaaggctttcttgcattggtacacaggtgaaggaatggatgagatggagttcactgaggctgagagcaacatgaatgatcttgtgtcggaatatca |
124 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||||| |||||||| ||||| ||||| || || ||||||||||||||||| || ||||| || || || |
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| T |
34841829 |
ggaggaaggctttcttgcattggtacactggtgaaggcatggatgaaatggaattcacagaagcagagagcaacatgaatgacctcgtgtctgagtacca |
34841928 |
T |
|
| Q |
125 |
acagtatcaagatgctactgc |
145 |
Q |
| |
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||||| || ||||| ||||| |
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| T |
34841929 |
gcagtaccaggatgccactgc |
34841949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 27 - 178
Target Start/End: Complemental strand, 45452473 - 45452322
Alignment:
| Q |
27 |
agaaaggctttcttgcattggtacacaggtgaaggaatggatgagatggagttcactgaggctgagagcaacatgaatgatcttgtgtcggaatatcaac |
126 |
Q |
| |
|
||||| ||||||||||||||||| || || || || ||||||||||||||||| ||||| || || |||||||||||||| ||||| || || || || | |
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| T |
45452473 |
agaaaagctttcttgcattggtatactggagagggtatggatgagatggagtttactgaagcagaaagcaacatgaatgaccttgtctcagagtaccagc |
45452374 |
T |
|
| Q |
127 |
agtatcaagatgctactgcagaggaggatgagtatgaagatgaagaggagga |
178 |
Q |
| |
|
| || ||||||||||||||||| || || | |||||| ||||||| ||||| |
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|
| T |
45452373 |
aataccaagatgctactgcagatgaagaggggtatgactatgaagatgagga |
45452322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 103
Target Start/End: Complemental strand, 53146064 - 53145991
Alignment:
| Q |
30 |
aaggctttcttgcattggtacacaggtgaaggaatggatgagatggagttcactgaggctgagagcaacatgaa |
103 |
Q |
| |
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||||| || ||||||||||| || || || ||||||||||||||||||||||| ||||| || || |||||||| |
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| T |
53146064 |
aaggcctttttgcattggtatactggggagggaatggatgagatggagttcacggaggcagaaagtaacatgaa |
53145991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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