View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20756_low_16 (Length: 334)

Name: NF20756_low_16
Description: NF20756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20756_low_16
NF20756_low_16
[»] chr8 (1 HSPs)
chr8 (19-314)||(30842366-30842661)


Alignment Details
Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 19 - 314
Target Start/End: Complemental strand, 30842661 - 30842366
Alignment:
Q  19 ataacctgtgtccaattgcataagcatcagtattaaacttgaatgtagacatagccttattattcaccaaataactgtcatccttggtaaataatgctaa 118  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  30842661 ataacttgtgtccaattgcataagcatcagtattaaacttgaatgtagacatagccttattattcaccaaataactgtcatccttagtaaataatgctaa 30842562  T
Q  119 ctttgaacccttcttctccttaatctcgacaccttctttatcgaataaattcgaagaagaaacaaaattcttggaagaagaagaagaagcagcatcacgg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30842561 ctttgaacccttcttctccttaatctcgacaccttctttatcgaataaactcgaagaagaaacaaaattcttggaagaagaagaagaagcagcatcacgg 30842462  T
Q  219 gacttattagaactcgaaatgcaattagaagctttgagaatgaaatcatcaaatagaacatgaactttttcgtgttctaagagtttaagagcatct 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||    
T  30842461 gacttattagaactcgaaatgcaattagaagctttgagaatgaaatcatcaaacagaacatgaactttttcgagttctaagagtttaagagcatct 30842366  T

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