View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20756_low_19 (Length: 291)

Name: NF20756_low_19
Description: NF20756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20756_low_19
NF20756_low_19
[»] chr2 (8 HSPs)
chr2 (30-245)||(37308310-37308524)
chr2 (89-204)||(33584443-33584558)
chr2 (62-159)||(18634558-18634655)
chr2 (232-273)||(37308254-37308295)
chr2 (80-161)||(44941262-44941343)
chr2 (47-146)||(6822992-6823091)
chr2 (65-159)||(9005433-9005527)
chr2 (95-167)||(1159389-1159461)
[»] chr6 (4 HSPs)
chr6 (27-200)||(31706328-31706502)
chr6 (38-204)||(6936961-6937127)
chr6 (44-140)||(14586076-14586172)
chr6 (82-159)||(1364685-1364762)
[»] chr4 (7 HSPs)
chr4 (27-161)||(32348756-32348888)
chr4 (78-200)||(40483772-40483894)
chr4 (63-146)||(53569603-53569686)
chr4 (63-111)||(48029244-48029292)
chr4 (64-153)||(18443375-18443464)
chr4 (63-161)||(56337946-56338044)
chr4 (90-159)||(2071160-2071229)
[»] chr7 (5 HSPs)
chr7 (27-139)||(19511977-19512088)
chr7 (78-158)||(8753839-8753919)
chr7 (44-137)||(30802246-30802339)
chr7 (63-156)||(34103073-34103166)
chr7 (78-200)||(44846186-44846308)
[»] chr5 (7 HSPs)
chr5 (44-159)||(22179429-22179544)
chr5 (28-159)||(5909513-5909643)
chr5 (63-160)||(27679646-27679743)
chr5 (63-116)||(26904612-26904665)
chr5 (47-146)||(14055102-14055201)
chr5 (38-140)||(13735357-13735459)
chr5 (106-159)||(16906922-16906975)
[»] scaffold0246 (1 HSPs)
scaffold0246 (78-200)||(21711-21833)
[»] chr1 (3 HSPs)
chr1 (27-174)||(38204302-38204448)
chr1 (80-158)||(36379665-36379743)
chr1 (63-159)||(34824928-34825024)
[»] scaffold0048 (1 HSPs)
scaffold0048 (63-123)||(64235-64295)
[»] chr8 (3 HSPs)
chr8 (44-159)||(15438744-15438859)
chr8 (44-159)||(15530048-15530163)
chr8 (63-138)||(6985209-6985284)
[»] chr3 (8 HSPs)
chr3 (63-146)||(46249320-46249403)
chr3 (82-165)||(47748776-47748859)
chr3 (67-111)||(4963962-4964006)
chr3 (82-161)||(21399996-21400075)
chr3 (44-159)||(35216351-35216466)
chr3 (47-153)||(5789937-5790043)
chr3 (63-111)||(14306866-14306914)
chr3 (63-159)||(31921800-31921896)
[»] scaffold0321 (1 HSPs)
scaffold0321 (63-159)||(17624-17720)


Alignment Details
Target: chr2 (Bit Score: 124; Significance: 8e-64; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 30 - 245
Target Start/End: Complemental strand, 37308524 - 37308310
Alignment:
Q  30 aaagtatatacaagaacaaaggttaatcaatatccaaacaaagcaaatggtccgaccatcatctctgagaaccgtacacaaacatggcattattaatttt 129  Q
    |||||||||||||||||||||| || |||||| ||| |||||||||||| |||||| | |||||||||||||||||||||||| |||| ||||||  |||    
T  37308524 aaagtatatacaagaacaaaggctagtcaatacccatacaaagcaaatgatccgactaccatctctgagaaccgtacacaaacgtggcgttattagcttt 37308425  T
Q  130 tagccaccaaaacgaattaaatttaactttatttaacagccgtaagataagagtttcaatgttgttaaatagcctattatcgcaatcattctcacaaata 229  Q
    || ||||||||||||||||||||||| ||||| ||| ||   ||||||| |||||||||||||||| ||||||||||||| || ||||||||||||||||    
T  37308424 taaccaccaaaacgaattaaatttaa-tttatctaagagttataagataggagtttcaatgttgttgaatagcctattattgcgatcattctcacaaata 37308326  T
Q  230 ataagtataatctgta 245  Q
    ||||||||||||||||    
T  37308325 ataagtataatctgta 37308310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 89 - 204
Target Start/End: Complemental strand, 33584558 - 33584443
Alignment:
Q  89 catctctgagaaccgtacacaaacatggcattattaatttttagccaccaaaacgaattaaatttaactttatttaacagccgtaagataagagtttcaa 188  Q
    |||||||||||||||||||||||  |||| ||||||  ||| |||||| ||||||||| ||||||||| || | ||| ||| |||| ||  |||||||||    
T  33584558 catctctgagaaccgtacacaaaagtggcgttattagctttcagccacaaaaacgaataaaatttaaccttttataatagctgtaaaatgggagtttcaa 33584459  T
Q  189 tgttgttaaatagcct 204  Q
    |||| || ||||||||    
T  33584458 tgttattgaatagcct 33584443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 62 - 159
Target Start/End: Original strand, 18634558 - 18634655
Alignment:
Q  62 tccaaacaaagcaaatggtccgaccatcatctctgagaaccgtacacaaacatggcattattaatttttagccaccaaaacgaattaaatttaacttt 159  Q
    |||||||| | |||| |||||||||| ||||||||||| || ||||||||| ||| |||||||  ||| || ||||||||| ||| ||||||||||||    
T  18634558 tccaaacataacaaagggtccgaccaccatctctgagagccatacacaaacgtggtattattagctttaagtcaccaaaacaaatgaaatttaacttt 18634655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 273
Target Start/End: Complemental strand, 37308295 - 37308254
Alignment:
Q  232 aagtataatctgtacttaatggatccaaaagttaactataag 273  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  37308295 aagtataatctgtacttaatggatccaaaagttaaccataag 37308254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 161
Target Start/End: Complemental strand, 44941343 - 44941262
Alignment:
Q  80 tccgaccatcatctctgagaaccgtacacaaacatggcattattaatttttagccaccaaaacgaattaaatttaactttat 161  Q
    |||||||| |||||||| ||||||||||||||  || |||| |||  |||||||||||||||||||| ||| || |||||||    
T  44941343 tccgaccaccatctctgtgaaccgtacacaaatgtgacattgttagcttttagccaccaaaacgaatgaaactttactttat 44941262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 47 - 146
Target Start/End: Original strand, 6822992 - 6823091
Alignment:
Q  47 aaaggttaatcaatatccaaacaaagcaaatggtccgaccatcatctctgagaaccgtacacaaacatggcattattaatttttagccaccaaaacgaat 146  Q
    |||||| |||| ||| |||||||||| ||| ||| |||||| ||||| |||||||||||||||||  |||  ||||||  ||||| |||||| |||||||    
T  6822992 aaaggtcaatcgatacccaaacaaagtaaagggttcgaccaccatctttgagaaccgtacacaaaattggtgttattagcttttaaccaccataacgaat 6823091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 159
Target Start/End: Original strand, 9005433 - 9005527
Alignment:
Q  65 aaacaaagcaaatggtccgaccatcatctctgagaaccgtacacaaacatggcattattaatttttagccaccaaaacgaattaaatttaacttt 159  Q
    ||||| |||| | |||||||||| || |||||||| ||||||| |||  ||||||||| |   || ||||||||| |||||| ||||||||||||    
T  9005433 aaacatagcatagggtccgaccaccaactctgagatccgtacataaaattggcattataagccttaagccaccaatacgaatgaaatttaacttt 9005527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 167
Target Start/End: Complemental strand, 1159461 - 1159389
Alignment:
Q  95 tgagaaccgtacacaaacatggcattattaatttttagccaccaaaacgaattaaatttaactttatttaaca 167  Q
    |||||||||||||||||  |||  || |||  ||| |||||||| ||||||| |||||||||||||| |||||    
T  1159461 tgagaaccgtacacaaaagtggtttttttagctttaagccaccacaacgaatgaaatttaactttatctaaca 1159389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 8e-30; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 27 - 200
Target Start/End: Original strand, 31706328 - 31706502
Alignment:
Q  27 tacaaagtatatacaagaa-caaaggttaatcaatatccaaacaaagcaaatggtccgaccatcatctctgagaaccgtacacaaacatggcattattaa 125  Q
    |||||| |||||||||| | ||||||| | || |||  ||||||||  ||| |||||||||| ||||||||||| ||| |||||||| |||||||||||     
T  31706328 tacaaaatatatacaaggatcaaaggtcagtcgatactcaaacaaattaaaaggtccgaccaccatctctgagagccgcacacaaacgtggcattattag 31706427  T
Q  126 tttttagccaccaaaacgaattaaatttaactttatttaacagccgtaagataagagtttcaatgttgttaaata 200  Q
     |||||||||||| |||||||  ||||||||||||| ||| ||| |||| ||| |||||||||||||||| ||||    
T  31706428 cttttagccaccataacgaatggaatttaactttatctaagagctgtaaaataggagtttcaatgttgttgaata 31706502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 38 - 204
Target Start/End: Original strand, 6936961 - 6937127
Alignment:
Q  38 tacaagaacaaaggttaatcaatatccaaacaaagcaaatggtccgaccatcatctctgagaaccgtacacaaacatggcattattaatttttagccacc 137  Q
    ||||||||||||||| | || ||| ||||||||| || | |||| ||||  ||||||||||||||||||||||| ||||| ||||||  | | |||||||    
T  6936961 tacaagaacaaaggtcagtcgatacccaaacaaatcatagggtctgaccgccatctctgagaaccgtacacaaaaatggcgttattagctctcagccacc 6937060  T
Q  138 aaaacgaattaaatttaactttatttaacagccgtaagataagagtttcaatgttgttaaatagcct 204  Q
    ||||||||| |||||||||  | ||||| ||  |||  ||| ||||||||||||| || ||||||||    
T  6937061 aaaacgaatgaaatttaaccatttttaatagttgtacaataggagtttcaatgttattgaatagcct 6937127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 44 - 140
Target Start/End: Complemental strand, 14586172 - 14586076
Alignment:
Q  44 aacaaaggttaatcaatatccaaacaaagcaaatggtccgaccatcatctctgagaaccgtacacaaacatggcattattaatttttagccaccaaa 140  Q
    ||||||||| ||||||||  ||||||||||||| | |||||||| ||||||| || ||| ||||||||  ||||||||||| |||| ||||||||||    
T  14586172 aacaaaggtcaatcaatacgcaaacaaagcaaaggatccgaccaccatctctaagcaccatacacaaatgtggcattattagttttcagccaccaaa 14586076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 159
Target Start/End: Original strand, 1364685 - 1364762
Alignment:
Q  82 cgaccatcatctctgagaaccgtacacaaacatggcattattaatttttagccaccaaaacgaattaaatttaacttt 159  Q
    |||||| ||||| |||||| | |||| ||||||| |||| |||  ||| ||||||||| |||||| ||||||||||||    
T  1364685 cgaccaccatctgtgagaatcatacagaaacatgacatttttagctttaagccaccaatacgaatgaaatttaacttt 1364762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 27 - 161
Target Start/End: Complemental strand, 32348888 - 32348756
Alignment:
Q  27 tacaaagtatatacaagaacaaaggttaatcaatatccaaacaaagcaaatggtccgaccatcatctctgagaaccgtacacaaacatggcattattaat 126  Q
    ||||||||||||||||  |||||||||| || ||| ||||||||| |||| | |||||||| |||||||||||||||||||||||||||||  | |||      
T  32348888 tacaaagtatatacaa--acaaaggttagtcgatacccaaacaaatcaaaggatccgaccaccatctctgagaaccgtacacaaacatggcggtcttagc 32348791  T
Q  127 ttttagccaccaaaacgaattaaatttaactttat 161  Q
    ||| ||||||||| |||| | |||||| |||||||    
T  32348790 tttcagccaccaatacgagtgaaattttactttat 32348756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 78 - 200
Target Start/End: Original strand, 40483772 - 40483894
Alignment:
Q  78 ggtccgaccatcatctctgagaaccgtacacaaacatggcattattaatttttagccaccaaaacgaattaaatttaactttatttaacagccgtaagat 177  Q
    |||||||||| |||||||||||||||| ||||||| |||||||||||| ||| |||||||| |  |||| ||||||||||| || ||| | | |||| ||    
T  40483772 ggtccgaccaccatctctgagaaccgtgcacaaacgtggcattattaactttaagccaccatatagaatgaaatttaacttgatctaataactgtaaaat 40483871  T
Q  178 aagagtttcaatgttgttaaata 200  Q
    | ||||||| |||||||| ||||    
T  40483872 aggagtttctatgttgttgaata 40483894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 63 - 146
Target Start/End: Original strand, 53569603 - 53569686
Alignment:
Q  63 ccaaacaaagcaaatggtccgaccatcatctctgagaaccgtacacaaacatggcattattaatttttagccaccaaaacgaat 146  Q
    |||||||||| ||| |||||||||| |||||||||||||||||||||||  ||   ||||||| |||||  |||||||||||||    
T  53569603 ccaaacaaagtaaagggtccgaccaccatctctgagaaccgtacacaaaattgatgttattaacttttaatcaccaaaacgaat 53569686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 48029244 - 48029292
Alignment:
Q  63 ccaaacaaagcaaatggtccgaccatcatctctgagaaccgtacacaaa 111  Q
    ||||||||| ||||||||||||||| ||||| |||||||||||||||||    
T  48029244 ccaaacaaaacaaatggtccgaccaccatctttgagaaccgtacacaaa 48029292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 64 - 153
Target Start/End: Complemental strand, 18443464 - 18443375
Alignment:
Q  64 caaacaaagcaaatggtccgaccatcatctctgagaaccgtacacaaacatggcattattaatttttagccaccaaaacgaattaaattt 153  Q
    ||||||||| ||| ||| |||||| ||| ||||||||| |||||||||  |||  |||| || ||||| |||||||||||||| ||||||    
T  18443464 caaacaaagtaaagggttcgaccaccatttctgagaactgtacacaaaagtggtgttatcaacttttaaccaccaaaacgaatgaaattt 18443375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 161
Target Start/End: Complemental strand, 56338044 - 56337946
Alignment:
Q  63 ccaaacaaagcaaatggtccgaccatcatctctgagaaccgtacacaaacatggcattattaatttttagccaccaaaacgaattaaatttaactttat 161  Q
    |||||||||||||  ||||| |||| ||||| |||||||| || |||||  ||||||| |||  |||||||||||| || ||| || ||||||| ||||    
T  56338044 ccaaacaaagcaaccggtccaaccaccatctttgagaaccataaacaaaagtggcattgttagcttttagccaccacaaagaagtatatttaaccttat 56337946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 159
Target Start/End: Original strand, 2071160 - 2071229
Alignment:
Q  90 atctctgagaaccgtacacaaacatggcattattaatttttagccaccaaaacgaattaaatttaacttt 159  Q
    |||| |||||| ||||||||||| || |||||||| |||| |||||| || |||||| |||||| |||||    
T  2071160 atctatgagaatcgtacacaaacgtgacattattagttttgagccactaatacgaatgaaatttcacttt 2071229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 27 - 139
Target Start/End: Original strand, 19511977 - 19512088
Alignment:
Q  27 tacaaagtatatacaagaacaaaggttaatcaatatccaaacaaagcaaatggtccgaccatcatctctgagaaccgtacacaaacatggcattattaat 126  Q
    |||||||||||||||| ||||||||||| || ||| ||||||||  || | |||||||||| ||||||||||||||||||||||||||| | ||||||      
T  19511977 tacaaagtatatacaa-aacaaaggttattcgatacccaaacaattcatagggtccgaccaccatctctgagaaccgtacacaaacatgacgttattagc 19512075  T
Q  127 ttttagccaccaa 139  Q
    ||| |||||||||    
T  19512076 tttcagccaccaa 19512088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 78 - 158
Target Start/End: Complemental strand, 8753919 - 8753839
Alignment:
Q  78 ggtccgaccatcatctctgagaaccgtacacaaacatggcattattaatttttagccaccaaaacgaattaaatttaactt 158  Q
    |||||||||| ||||||||| |||||||||||||||||||||| |||  ||| ||||||||| |||||| |||||||||||    
T  8753919 ggtccgaccaccatctctgaaaaccgtacacaaacatggcatttttagctttgagccaccaatacgaatgaaatttaactt 8753839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 44 - 137
Target Start/End: Complemental strand, 30802339 - 30802246
Alignment:
Q  44 aacaaaggttaatcaatatccaaacaaagcaaatggtccgaccatcatctctgagaaccgtacacaaacatggcattattaatttttagccacc 137  Q
    ||||||||||| || ||| ||||||||| |||| |||||||||| | |||||||||||||||||||||| |||| ||||||  ||| |||||||    
T  30802339 aacaaaggttagtcgatacccaaacaaatcaaagggtccgaccaccgtctctgagaaccgtacacaaacgtggcgttattagctttcagccacc 30802246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 156
Target Start/End: Original strand, 34103073 - 34103166
Alignment:
Q  63 ccaaacaaagcaaatggtccgaccatcatctctgagaaccgtacacaaacatggcattattaatttttagccaccaaaacgaattaaatttaac 156  Q
    ||||| |||| |||||||||||||| |||||||| || ||| |||||||  ||||||||||   ||| ||||| |||||||||| |||||||||    
T  34103073 ccaaataaagtaaatggtccgaccaccatctctgcgacccgcacacaaaattggcattattggctttaagccatcaaaacgaatgaaatttaac 34103166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 200
Target Start/End: Complemental strand, 44846308 - 44846186
Alignment:
Q  78 ggtccgaccatcatctctgagaaccgtacacaaacatggcattattaatttttagccaccaaaacgaattaaatttaactttatttaacagccgtaagat 177  Q
    ||||| ||||||||||||||||||||| ||||||  ||| |||||||  ||| |  ||||| || |||| ||||||||||| || ||| | | |||| ||    
T  44846308 ggtccaaccatcatctctgagaaccgtgcacaaatgtggtattattagctttaaatcaccataaagaatgaaatttaacttgatctaataactgtaaaat 44846209  T
Q  178 aagagtttcaatgttgttaaata 200  Q
    | ||||||| |||||||| ||||    
T  44846208 aggagtttctatgttgttgaata 44846186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 7e-21; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 44 - 159
Target Start/End: Complemental strand, 22179544 - 22179429
Alignment:
Q  44 aacaaaggttaatcaatatccaaacaaagcaaatggtccgaccatcatctctgagaaccgtacacaaacatggcattattaatttttagccaccaaaacg 143  Q
    ||||||||| | || ||| |||||||||  |||||||||||| | |||||||||||||||||| |||||||| ||||||||  ||||||||||||||| |    
T  22179544 aacaaaggtcagtcgatacccaaacaaattaaatggtccgactaccatctctgagaaccgtactcaaacatgacattattagcttttagccaccaaaatg 22179445  T
Q  144 aattaaatttaacttt 159  Q
    ||| ||| || |||||    
T  22179444 aatgaaactttacttt 22179429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 28 - 159
Target Start/End: Complemental strand, 5909643 - 5909513
Alignment:
Q  28 acaaagtatatacaagaacaaaggttaatcaatatccaaacaaagcaaatggtccgaccatcatctctgagaaccgtacacaaacatggcattattaatt 127  Q
    ||||||||||||||| ||||||||||| |  ||| ||||||||| |||| |||||||||| |||||||||||| ||||||||||  |||| |||||   |    
T  5909643 acaaagtatatacaa-aacaaaggttagttgatacccaaacaaatcaaagggtccgaccaccatctctgagaatcgtacacaaaagtggcgttatttgct 5909545  T
Q  128 tttagccaccaaaacgaattaaatttaacttt 159  Q
    || ||||||||| |||| | |||||| |||||    
T  5909544 ttcagccaccaatacgagtgaaattttacttt 5909513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 160
Target Start/End: Complemental strand, 27679743 - 27679646
Alignment:
Q  63 ccaaacaaagcaaatggtccgaccatcatctctgagaaccgtacacaaacatggcattattaatttttagccaccaaaacgaattaaatttaacttta 160  Q
    ||||||| |||| | |||||||||| ||| |||||||||||||||||||  || ||||||||   || |||||||  ||||||| |||||||||||||    
T  27679743 ccaaacatagcatagggtccgaccaccatttctgagaaccgtacacaaaagtgacattattagccttaagccaccggaacgaatgaaatttaacttta 27679646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 63 - 116
Target Start/End: Complemental strand, 26904665 - 26904612
Alignment:
Q  63 ccaaacaaagcaaatggtccgaccatcatctctgagaaccgtacacaaacatgg 116  Q
    |||||||| | |||||||||||||| || ||||||||||| |||||||||||||    
T  26904665 ccaaacaatgtaaatggtccgaccaccaactctgagaaccatacacaaacatgg 26904612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 146
Target Start/End: Complemental strand, 14055201 - 14055102
Alignment:
Q  47 aaaggttaatcaatatccaaacaaagcaaatggtccgaccatcatctctgagaaccgtacacaaacatggcattattaatttttagccaccaaaacgaat 146  Q
    |||||| |||||||| |||||||||  ||| |||||| ||| ||||| |||||||| ||||||||  |||  ||||||  ||| | ||||||||||||||    
T  14055201 aaaggtcaatcaatacccaaacaaaataaagggtccggccaccatctttgagaaccatacacaaaattggtgttattatctttcaaccaccaaaacgaat 14055102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 140
Target Start/End: Complemental strand, 13735459 - 13735357
Alignment:
Q  38 tacaagaacaaaggttaatcaatatccaaacaaagcaaatggtccgaccatcatctctgagaaccgtacacaaacatggcattattaatttttagccacc 137  Q
    ||||| || |||||| | |||||| ||||||| || ||| ||| |||||| ||||||| ||| |||||||||||  ||| |||||||  ||||| |||||    
T  13735459 tacaataaaaaaggtcagtcaatacccaaacacagtaaagggttcgaccaccatctctaagagccgtacacaaaagtggtattattagcttttaaccacc 13735360  T
Q  138 aaa 140  Q
    |||    
T  13735359 aaa 13735357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 159
Target Start/End: Original strand, 16906922 - 16906975
Alignment:
Q  106 cacaaacatggcattattaatttttagccaccaaaacgaattaaatttaacttt 159  Q
    ||||||| ||||||||||   ||| |||||||||||||||| ||||||||||||    
T  16906922 cacaaacgtggcattattcgctttaagccaccaaaacgaatgaaatttaacttt 16906975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 78 - 200
Target Start/End: Original strand, 21711 - 21833
Alignment:
Q  78 ggtccgaccatcatctctgagaaccgtacacaaacatggcattattaatttttagccaccaaaacgaattaaatttaactttatttaacagccgtaagat 177  Q
    |||||||||| |||||||||||||||| ||||||| |||||||||||| ||| |||||||| |  |||| ||||||||||| || ||| | | |||| ||    
T  21711 ggtccgaccaccatctctgagaaccgtgcacaaacgtggcattattaactttaagccaccatatagaatgaaatttaacttgatctaataactgtaaaat 21810  T
Q  178 aagagtttcaatgttgttaaata 200  Q
    | ||||||| |||||||| ||||    
T  21811 aggagtttctatgttgttgaata 21833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 27 - 174
Target Start/End: Complemental strand, 38204448 - 38204302
Alignment:
Q  27 tacaaagtatatacaagaacaaaggttaatcaatatccaaacaaagcaaatggtccgaccatcatctctgagaaccgtacacaaacatggcattattaat 126  Q
    |||||| ||||||||| | |||||| || || ||| ||||||||| |||| |||||||||| ||||| || ||  ||||||||||  | |||||||||      
T  38204448 tacaaaatatatacaa-atcaaaggctagtcgatacccaaacaaatcaaagggtccgaccaccatctttgcgagtcgtacacaaatgtagcattattagc 38204350  T
Q  127 ttttagccaccaaaacgaattaaatttaactttatttaacagccgtaa 174  Q
    |||||||||| ||||||||||||| || ||||||| ||| ||| ||||    
T  38204349 ttttagccactaaaacgaattaaacttcactttatctaagagctgtaa 38204302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 158
Target Start/End: Original strand, 36379665 - 36379743
Alignment:
Q  80 tccgaccatcatctctgagaaccgtacacaaacatggcattattaatttttagccaccaaaacgaattaaatttaactt 158  Q
    |||||||| |||||||||||||||||||||||  || ||||||||| ||| | |||  | || |||| |||||||||||    
T  36379665 tccgaccaccatctctgagaaccgtacacaaatgtgacattattaactttaaaccattataaagaatgaaatttaactt 36379743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 159
Target Start/End: Complemental strand, 34825024 - 34824928
Alignment:
Q  63 ccaaacaaagcaaatggtccgaccatcatctctgagaaccgtacacaaacatggcattattaatttttagccaccaaaacgaattaaatttaacttt 159  Q
    |||||||||||| | ||||| |||| || || ||| |||||||||||||  |||| ||| ||| |||||||||||| || ||||  ||||| |||||    
T  34825024 ccaaacaaagcatagggtccaaccaccacctttgataaccgtacacaaatgtggctttactaacttttagccaccataaagaatgtaattttacttt 34824928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 63 - 123
Target Start/End: Complemental strand, 64295 - 64235
Alignment:
Q  63 ccaaacaaagcaaatggtccgaccatcatctctgagaaccgtacacaaacatggcattatt 123  Q
    |||||||||| ||| | ||||||||||||||||||||||||||||||||  ||||||||||    
T  64295 ccaaacaaagtaaaggatccgaccatcatctctgagaaccgtacacaaatgtggcattatt 64235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 44 - 159
Target Start/End: Original strand, 15438744 - 15438859
Alignment:
Q  44 aacaaaggttaatcaatatccaaacaaagcaaatggtccgaccatcatctctgagaaccgtacacaaacatggcattattaatttttagccaccaaaacg 143  Q
    ||||||||| | || ||| |||||||||||| | |||||||||| ||||||| || | ||||||||||  |||  ||||||   || |||||||||| ||    
T  15438744 aacaaaggtcagtcgatacccaaacaaagcatagggtccgaccaccatctcttagtatcgtacacaaaattggtgttattagccttaagccaccaaagcg 15438843  T
Q  144 aattaaatttaacttt 159  Q
    ||| ||||||||||||    
T  15438844 aatgaaatttaacttt 15438859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 44 - 159
Target Start/End: Original strand, 15530048 - 15530163
Alignment:
Q  44 aacaaaggttaatcaatatccaaacaaagcaaatggtccgaccatcatctctgagaaccgtacacaaacatggcattattaatttttagccaccaaaacg 143  Q
    ||||||||| | || ||| |||||||||||| | |||||||||| ||||||| || | ||||||||||  |||  ||||||   || |||||||||| ||    
T  15530048 aacaaaggtcagtcgatacccaaacaaagcatagggtccgaccaccatctcttagtatcgtacacaaaattggtgttattagccttaagccaccaaagcg 15530147  T
Q  144 aattaaatttaacttt 159  Q
    ||| ||||||||||||    
T  15530148 aatgaaatttaacttt 15530163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 63 - 138
Target Start/End: Complemental strand, 6985284 - 6985209
Alignment:
Q  63 ccaaacaaagcaaatggtccgaccatcatctctgagaaccgtacacaaacatggcattattaatttttagccacca 138  Q
    |||||||||||| | |||||||||| ||||| ||| |||||||||||||  |||| ||| ||  ||||||||||||    
T  6985284 ccaaacaaagcatagggtccgaccaccatctttgataaccgtacacaaatgtggctttactagcttttagccacca 6985209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 63 - 146
Target Start/End: Complemental strand, 46249403 - 46249320
Alignment:
Q  63 ccaaacaaagcaaatggtccgaccatcatctctgagaaccgtacacaaacatggcattattaatttttagccaccaaaacgaat 146  Q
    |||||||||| ||| |||||||||| ||||| || ||||||||||||||  |||  ||||||| ||||| |||||| |||||||    
T  46249403 ccaaacaaagtaaagggtccgaccaccatctttgggaaccgtacacaaaattggtgttattaacttttaaccaccataacgaat 46249320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 165
Target Start/End: Original strand, 47748776 - 47748859
Alignment:
Q  82 cgaccatcatctctgagaaccgtacacaaacatggcattattaatttttagccaccaaaacgaattaaatttaactttatttaa 165  Q
    |||||| || || |||||||||||||||||  ||| ||||||   ||| |||||||| ||||||| ||||||||||||||||||    
T  47748776 cgaccaccaactttgagaaccgtacacaaaagtggtattattggctttaagccaccacaacgaatgaaatttaactttatttaa 47748859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 111
Target Start/End: Original strand, 4963962 - 4964006
Alignment:
Q  67 acaaagcaaatggtccgaccatcatctctgagaaccgtacacaaa 111  Q
    |||||| ||| |||||||||| |||||||||||||||||||||||    
T  4963962 acaaagtaaagggtccgaccaccatctctgagaaccgtacacaaa 4964006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 82 - 161
Target Start/End: Original strand, 21399996 - 21400075
Alignment:
Q  82 cgaccatcatctctgagaaccgtacacaaacatggcattattaatttttagccaccaaaacgaattaaatttaactttat 161  Q
    |||||| || || |||||||||||||||||  ||| ||||||   ||| |||||||| ||||||| ||||||||||||||    
T  21399996 cgaccaccaactttgagaaccgtacacaaaagtggtattattggctttaagccaccacaacgaatgaaatttaactttat 21400075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 44 - 159
Target Start/End: Complemental strand, 35216466 - 35216351
Alignment:
Q  44 aacaaaggttaatcaatatccaaacaaagcaaatggtccgaccatcatctctgagaaccgtacacaaacatggcattattaatttttagccaccaaaacg 143  Q
    ||||||||| | || ||| |||||||| ||| | ||||| |||| |||||||||| ||||||||||||  |||| || |||   || |||||||| |||     
T  35216466 aacaaaggtcagtcgatacccaaacaatgcatagggtccaaccaccatctctgagtaccgtacacaaaattggcgttcttagccttaagccaccataaca 35216367  T
Q  144 aattaaatttaacttt 159  Q
    ||| ||||||||||||    
T  35216366 aatgaaatttaacttt 35216351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 153
Target Start/End: Complemental strand, 5790043 - 5789937
Alignment:
Q  47 aaaggttaatcaatatccaaacaaagcaaatggtccgaccatcatctctgagaaccgtacacaaacatggcattattaatttttagccaccaaaacgaat 146  Q
    |||||| | |||||| ||| |||||| ||| ||||| |||| ||||||| ||| |||||||||||  |||  ||||||  ||||| |||||||||| |||    
T  5790043 aaaggtcagtcaatacccagacaaagtaaagggtccaaccaccatctctcagagccgtacacaaaagtggtgttattagcttttaaccaccaaaacaaat 5789944  T
Q  147 taaattt 153  Q
     ||||||    
T  5789943 gaaattt 5789937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 14306866 - 14306914
Alignment:
Q  63 ccaaacaaagcaaatggtccgaccatcatctctgagaaccgtacacaaa 111  Q
    |||||||||  ||| ||| |||||| |||||||||||||||||||||||    
T  14306866 ccaaacaaaataaagggttcgaccaccatctctgagaaccgtacacaaa 14306914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 159
Target Start/End: Complemental strand, 31921896 - 31921800
Alignment:
Q  63 ccaaacaaagcaaatggtccgaccatcatctctgagaaccgtacacaaacatggcattattaatttttagccaccaaaacgaattaaatttaacttt 159  Q
    |||||||||||| | ||| |||||| || |||||| |||||||||||||  |||| ||| ||  |||||||||||| || ||||  ||||| |||||    
T  31921896 ccaaacaaagcatagggttcgaccaccacctctgataaccgtacacaaatttggctttactagcttttagccaccataaagaatgtaattttacttt 31921800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 159
Target Start/End: Complemental strand, 17720 - 17624
Alignment:
Q  63 ccaaacaaagcaaatggtccgaccatcatctctgagaaccgtacacaaacatggcattattaatttttagccaccaaaacgaattaaatttaacttt 159  Q
    |||||||| ||||| |||||||||| || ||||||| |||||||||||| ||  | || |||   || |||||||| ||||||| ||||||||||||    
T  17720 ccaaacaatgcaaagggtccgaccaccaactctgagtaccgtacacaaaaataacgttcttagccttaagccaccataacgaataaaatttaacttt 17624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University