View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20756_low_2 (Length: 563)

Name: NF20756_low_2
Description: NF20756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20756_low_2
NF20756_low_2
[»] chr3 (10 HSPs)
chr3 (304-546)||(38053790-38054032)
chr3 (1-272)||(38053487-38053758)
chr3 (102-180)||(33674384-33674462)
chr3 (100-174)||(32117962-32118036)
chr3 (100-191)||(36618090-36618178)
chr3 (306-365)||(28720846-28720905)
chr3 (100-167)||(54481485-54481552)
chr3 (100-174)||(9198038-9198112)
chr3 (100-182)||(32325992-32326078)
chr3 (100-180)||(32582597-32582676)
[»] scaffold0010 (1 HSPs)
scaffold0010 (100-173)||(166741-166814)
[»] chr1 (17 HSPs)
chr1 (100-175)||(32348408-32348483)
chr1 (100-180)||(3160991-3161071)
chr1 (100-180)||(21516493-21516573)
chr1 (100-174)||(28870462-28870536)
chr1 (100-150)||(35058687-35058737)
chr1 (100-173)||(1714030-1714103)
chr1 (109-177)||(5923865-5923933)
chr1 (101-173)||(31117590-31117662)
chr1 (107-167)||(32602949-32603009)
chr1 (100-174)||(7460255-7460328)
chr1 (100-150)||(22593522-22593572)
chr1 (106-164)||(31795352-31795410)
chr1 (101-174)||(35272478-35272552)
chr1 (100-161)||(3949641-3949702)
chr1 (100-153)||(4372812-4372865)
chr1 (101-150)||(35926534-35926583)
chr1 (100-148)||(23908839-23908887)
[»] chr8 (7 HSPs)
chr8 (100-174)||(28947309-28947383)
chr8 (100-182)||(35764727-35764809)
chr8 (100-174)||(2111017-2111091)
chr8 (101-174)||(43408677-43408750)
chr8 (100-150)||(8407589-8407639)
chr8 (102-181)||(925986-926065)
chr8 (106-173)||(37740756-37740823)
[»] chr4 (11 HSPs)
chr4 (100-174)||(34812665-34812739)
chr4 (107-174)||(52327445-52327512)
chr4 (306-381)||(30254010-30254085)
chr4 (100-182)||(39276515-39276597)
chr4 (132-180)||(30070328-30070376)
chr4 (100-159)||(44555579-44555638)
chr4 (100-174)||(2103188-2103262)
chr4 (105-162)||(41758661-41758718)
chr4 (116-172)||(27611812-27611868)
chr4 (100-172)||(37713455-37713527)
chr4 (100-148)||(50133287-50133335)
[»] chr6 (4 HSPs)
chr6 (100-174)||(29052699-29052773)
chr6 (101-150)||(8014439-8014488)
chr6 (100-174)||(34544426-34544500)
chr6 (101-150)||(2748302-2748351)
[»] chr2 (11 HSPs)
chr2 (100-174)||(30804367-30804441)
chr2 (103-150)||(42139530-42139577)
chr2 (100-180)||(8752611-8752690)
chr2 (100-164)||(15967966-15968030)
chr2 (100-174)||(5946559-5946633)
chr2 (100-142)||(27679233-27679275)
chr2 (102-146)||(33651184-33651228)
chr2 (100-147)||(21721922-21721969)
chr2 (101-167)||(27863873-27863939)
chr2 (100-141)||(18491969-18492010)
chr2 (100-161)||(21938041-21938102)
[»] chr7 (5 HSPs)
chr7 (105-174)||(2525296-2525365)
chr7 (115-173)||(15050624-15050682)
chr7 (100-170)||(15050970-15051040)
chr7 (102-180)||(3837088-3837161)
chr7 (100-180)||(13438306-13438386)
[»] chr5 (11 HSPs)
chr5 (100-167)||(17259609-17259676)
chr5 (100-173)||(31677296-31677369)
chr5 (107-151)||(13838741-13838785)
chr5 (306-364)||(11237677-11237735)
chr5 (101-174)||(6462239-6462311)
chr5 (104-161)||(32046916-32046973)
chr5 (100-142)||(1621439-1621481)
chr5 (101-171)||(9005331-9005401)
chr5 (100-150)||(17902790-17902840)
chr5 (100-174)||(34640181-34640255)
chr5 (100-161)||(28363542-28363603)
[»] scaffold0022 (1 HSPs)
scaffold0022 (100-173)||(84838-84911)


Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-134; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 304 - 546
Target Start/End: Original strand, 38053790 - 38054032
Alignment:
Q  304 agttctcgaattaacttgacctgtttgctctgctctattagaaagtttgccttagctatagatgtgctgacatggatcgagagattcctgcactcatggg 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38053790 agttctcgaattaacttgacctgtttgctctgctctattagaaagtttgccttagctatagatgtgctgacatggatcgagagattcctgcactcatggg 38053889  T
Q  404 tgtttcgaaggccattttggaaaatgttatattcgttcatcaagatgaagcaaattggccacttcaagatccttccacgttaaagaagaagtttgatgac 503  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38053890 tgtttcgaaggccattttggaaaatgttatattcgttcatcaagatgaagcaaattggccacttcaagatccttccacgttaaagaagaagtttgatgac 38053989  T
Q  504 atcttttccgcaactcggtaccttctactaatccctctttcat 546  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  38053990 atcttttccgcaactcggtaccttctactaatccctctttcat 38054032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 168; E-Value: 9e-90
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 38053487 - 38053758
Alignment:
Q  1 tcattccagcttaagcaaaaaacactcgtttggccactgccattttatcagacttataacttattttcactgccttatagcttaagcatatannnnnnna 100  Q
    ||||||||||||||||||||||||||||||||| ||||| |||||| ||||||| |||||||||||||||| ||||||||||||| |||||        |    
T  38053487 tcattccagcttaagcaaaaaacactcgtttggtcactgtcattttttcagactcataacttattttcactaccttatagcttaaacatattttttttta 38053586  T
Q  101 tgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagcttatcaactattattaccaaacagagcctta 200  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  38053587 tgtcatttcatatttataagctatctcaactgctaattttactaaacactccatattcgattagctagcttatcaactattattaccaaacagagcctta 38053686  T
Q  201 aattcttgaaaatgtannnnnnnnnnnnnaatttccttatatttatattatggtatgtactttactggctga 272  Q
    |||||||||||||||              |||||| ||||||||||||||||||||||||||||||||||||    
T  38053687 aattcttgaaaatgtttttttttttttttaatttcgttatatttatattatggtatgtactttactggctga 38053758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 102 - 180
Target Start/End: Complemental strand, 33674462 - 33674384
Alignment:
Q  102 gtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagcttatcaactat 180  Q
    |||| ||||||||||| |||||| ||||||||| ||||||  ||||||| || ||||||| ||||||||||||||||||    
T  33674462 gtcacttcatatttatgagctagttcaactgctgattttagcaaacactacaaattcaatgagctagcttatcaactat 33674384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 100 - 174
Target Start/End: Original strand, 32117962 - 32118036
Alignment:
Q  100 atgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagcttatc 174  Q
    |||| |||||||||||||||||||| ||| |||||||| |||| |||||||  | ||||| | ||||||||||||    
T  32117962 atgttatttcatatttataagctagttcagctgctaatcttaccaaacactaaaaattcagtcagctagcttatc 32118036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 100 - 191
Target Start/End: Original strand, 36618090 - 36618178
Alignment:
Q  100 atgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagcttatcaactattattaccaaac 191  Q
    |||||||||| |||| ||||||||| |||   |||||||||||  |||||| || |||||||| |||||||||||| ||| | |||||||||    
T  36618090 atgtcatttcgtattgataagctagttca---gctaattttaccgaacactacaaattcaattggctagcttatcagctaattttaccaaac 36618178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 365
Target Start/End: Original strand, 28720846 - 28720905
Alignment:
Q  306 ttctcgaattaacttgacctgtttgctctgctctattagaaagtttgccttagctataga 365  Q
    ||||| |||||| |||||||| ||||||||||||||| ||| |||| ||||| |||||||    
T  28720846 ttctcaaattaatttgacctggttgctctgctctattggaatgtttaccttaactataga 28720905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 167
Target Start/End: Complemental strand, 54481552 - 54481485
Alignment:
Q  100 atgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagcta 167  Q
    |||| |||||||||||||||| ||||||||| | ||||||||  |||||||  | |||||||||||||    
T  54481552 atgttatttcatatttataagttagctcaacagataattttatcaaacactataaattcaattagcta 54481485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 100 - 174
Target Start/End: Complemental strand, 9198112 - 9198038
Alignment:
Q  100 atgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagcttatc 174  Q
    ||||||||||||||||| || |||| |||||  |||||||||| ||||||| || ||||||| | ||| ||||||    
T  9198112 atgtcatttcatatttacaaactagttcaacaactaattttaccaaacactacagattcaatcaactaacttatc 9198038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 182
Target Start/End: Complemental strand, 32326078 - 32325992
Alignment:
Q  100 atgtcatttcatattt----ataagctagctcaactgctaattttactaaacactccatattcaattagctagcttatcaactatta 182  Q
    ||||||||||||| ||    ||||||||| |||||| |||||||||| ||||||| || |||| || | |||||||||| |||||||    
T  32326078 atgtcatttcataattataaataagctagttcaactactaattttaccaaacactacaaattccatcaactagcttatccactatta 32325992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 100 - 180
Target Start/End: Original strand, 32582597 - 32582676
Alignment:
Q  100 atgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagcttatcaactat 180  Q
    ||||||||||||| ||||||||||  ||| | ||||||||||| ||||||| || ||||||| | |||| |||||| ||||    
T  32582597 atgtcatttcatacttataagctacttca-cggctaattttaccaaacactacaaattcaatcaactaggttatcagctat 32582676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 100 - 173
Target Start/End: Original strand, 166741 - 166814
Alignment:
Q  100 atgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagcttat 173  Q
    ||||||||||||||||||||||||| ||||| ||||||||||| ||||||| || ||||||| |||||||||||    
T  166741 atgtcatttcatatttataagctagttcaaccgctaattttaccaaacactacaaattcaatcagctagcttat 166814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 4e-18; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 100 - 175
Target Start/End: Original strand, 32348408 - 32348483
Alignment:
Q  100 atgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagcttatca 175  Q
    ||||||||||| ||||||||||||||||||| ||||||||||| ||||||| || ||||||| | |||||||||||    
T  32348408 atgtcatttcaaatttataagctagctcaaccgctaattttaccaaacactacaaattcaatcaactagcttatca 32348483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 100 - 180
Target Start/End: Original strand, 3160991 - 3161071
Alignment:
Q  100 atgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagcttatcaactat 180  Q
    ||||||||||||||||||| ||||| ||||  | ||||||||| ||||||| || ||||||| ||||||||||| ||||||    
T  3160991 atgtcatttcatatttatatgctagttcaaacgttaattttaccaaacactacaaattcaatcagctagcttattaactat 3161071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 100 - 180
Target Start/End: Complemental strand, 21516573 - 21516493
Alignment:
Q  100 atgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagcttatcaactat 180  Q
    ||||||||||||||||| ||||||  |||||  |||||||||| ||||||  || ||||||| |||||||||||| |||||    
T  21516573 atgtcatttcatatttaaaagctatttcaaccactaattttaccaaacacaacaaattcaatcagctagcttatccactat 21516493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 100 - 174
Target Start/End: Complemental strand, 28870536 - 28870462
Alignment:
Q  100 atgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagcttatc 174  Q
    |||| ||||||| |||||||||||| ||||||| ||||||||| |||||||  | ||||||| | ||||||||||    
T  28870536 atgtaatttcatttttataagctagttcaactgttaattttaccaaacactaaaaattcaataaactagcttatc 28870462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 100 - 150
Target Start/End: Original strand, 35058687 - 35058737
Alignment:
Q  100 atgtcatttcatatttataagctagctcaactgctaattttactaaacact 150  Q
    ||||||||||||||||||||| ||| ||||| ||||||||||| |||||||    
T  35058687 atgtcatttcatatttataaggtagttcaaccgctaattttaccaaacact 35058737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 100 - 173
Target Start/End: Complemental strand, 1714103 - 1714030
Alignment:
Q  100 atgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagcttat 173  Q
    |||||||||||||||||||| |||  ||||| | ||||||||| ||||||| || ||||||| || ||||||||    
T  1714103 atgtcatttcatatttataaactacttcaacggttaattttaccaaacactacaaattcaatcagttagcttat 1714030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 109 - 177
Target Start/End: Original strand, 5923865 - 5923933
Alignment:
Q  109 catatttataagctagctcaactgctaattttactaaacactccatattcaattagctagcttatcaac 177  Q
    |||||||||||||||| |||||   ||||||||| |||||||  | ||||||| |||||||||||||||    
T  5923865 catatttataagctagttcaaccattaattttaccaaacactaaaaattcaatcagctagcttatcaac 5923933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 101 - 173
Target Start/End: Complemental strand, 31117662 - 31117590
Alignment:
Q  101 tgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagcttat 173  Q
    |||||||||||||||||| ||||  ||||  ||||||||||  ||||||| || ||||||| |||||||||||    
T  31117662 tgtcatttcatatttatatgctatttcaatcgctaattttatcaaacactacaaattcaatcagctagcttat 31117590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 107 - 167
Target Start/End: Original strand, 32602949 - 32603009
Alignment:
Q  107 ttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagcta 167  Q
    |||||||||||||||||  |||||  |||||||||||||||||| || ||||||| |||||    
T  32602949 ttcatatttataagctacttcaaccactaattttactaaacactacaaattcaatcagcta 32603009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 100 - 174
Target Start/End: Original strand, 7460255 - 7460328
Alignment:
Q  100 atgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagcttatc 174  Q
    |||||||||||||| |||||||||| | ||| ||||| ||||| ||||||| || ||||||| | ||||||||||    
T  7460255 atgtcatttcatatatataagctagtttaaccgctaagtttac-aaacactacaaattcaatcatctagcttatc 7460328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 100 - 150
Target Start/End: Complemental strand, 22593572 - 22593522
Alignment:
Q  100 atgtcatttcatatttataagctagctcaactgctaattttactaaacact 150  Q
    |||||||||||||||||||||||||   ||||||||||||||  |||||||    
T  22593572 atgtcatttcatatttataagctagtcgaactgctaattttatcaaacact 22593522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 106 - 164
Target Start/End: Complemental strand, 31795410 - 31795352
Alignment:
Q  106 tttcatatttataagctagctcaactgctaattttactaaacactccatattcaattag 164  Q
    ||||||||||||||||||| ||||| | || |||||| ||||||| || ||||||||||    
T  31795410 tttcatatttataagctagttcaaccgttagttttaccaaacactacaaattcaattag 31795352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 101 - 174
Target Start/End: Complemental strand, 35272552 - 35272478
Alignment:
Q  101 tgtcatttcatatttat-aagctagctcaactgctaattttactaaacactccatattcaattagctagcttatc 174  Q
    ||||||||||||||| | ||| ||  ||||| | ||||||||||||||||| || ||||||| ||||||||||||    
T  35272552 tgtcatttcatattttttaagatacttcaaccgataattttactaaacactacaaattcaatcagctagcttatc 35272478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 161
Target Start/End: Complemental strand, 3949702 - 3949641
Alignment:
Q  100 atgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaat 161  Q
    ||||||||||||||||||||  ||| ||||  ||||||||||| ||||||| || |||||||    
T  3949702 atgtcatttcatatttataaattagttcaaacgctaattttaccaaacactacaaattcaat 3949641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 153
Target Start/End: Complemental strand, 4372865 - 4372812
Alignment:
Q  100 atgtcatttcatatttataagctagctcaactgctaattttactaaacactcca 153  Q
    ||||||||||||||||||||| ||| ||||| |||||| |||  ||||||||||    
T  4372865 atgtcatttcatatttataagttagttcaaccgctaatcttagaaaacactcca 4372812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 150
Target Start/End: Complemental strand, 35926583 - 35926534
Alignment:
Q  101 tgtcatttcatatttataagctagctcaactgctaattttactaaacact 150  Q
    |||||||||||| ||||||||||| |||||  |||||||||| |||||||    
T  35926583 tgtcatttcatacttataagctagttcaaccactaattttaccaaacact 35926534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 100 - 148
Target Start/End: Complemental strand, 23908887 - 23908839
Alignment:
Q  100 atgtcatttcatatttataagctagctcaactgctaattttactaaaca 148  Q
    ||||||||||||||||||||||||| |||||  ||||||| || |||||    
T  23908887 atgtcatttcatatttataagctagttcaaccactaatttcaccaaaca 23908839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 100 - 174
Target Start/End: Complemental strand, 28947383 - 28947309
Alignment:
Q  100 atgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagcttatc 174  Q
    ||||||||||||||||||||||||| |||||  | |||||||||||||||| || ||||||| ||||||||||||    
T  28947383 atgtcatttcatatttataagctagttcaaccacaaattttactaaacactgcaaattcaatcagctagcttatc 28947309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 100 - 182
Target Start/End: Original strand, 35764727 - 35764809
Alignment:
Q  100 atgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagcttatcaactatta 182  Q
    |||||||||||||||||||| |||| ||||| ||||||||||| ||||||| || ||||||| | |||| |||||||||||||    
T  35764727 atgtcatttcatatttataaactagttcaaccgctaattttaccaaacactgcaaattcaatcaactagattatcaactatta 35764809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 100 - 174
Target Start/End: Original strand, 2111017 - 2111091
Alignment:
Q  100 atgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagcttatc 174  Q
    ||||||||||||||||||||||||| ||||| ||||||||||| ||||||| || ||||||| || || ||||||    
T  2111017 atgtcatttcatatttataagctagttcaaccgctaattttaccaaacactgcaaattcaatcagttatcttatc 2111091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 101 - 174
Target Start/End: Original strand, 43408677 - 43408750
Alignment:
Q  101 tgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagcttatc 174  Q
    |||||||||||||||||||||||| |||| | |||||||||| ||||||| || |||||||  |||||||||||    
T  43408677 tgtcatttcatatttataagctagttcaattactaattttaccaaacactacaaattcaatcggctagcttatc 43408750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 100 - 150
Target Start/End: Original strand, 8407589 - 8407639
Alignment:
Q  100 atgtcatttcatatttataagctagctcaactgctaattttactaaacact 150  Q
    ||||||||||||||||||||||||| ||||| ||||||||||| |||||||    
T  8407589 atgtcatttcatatttataagctagttcaaccgctaattttaccaaacact 8407639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 102 - 181
Target Start/End: Original strand, 925986 - 926065
Alignment:
Q  102 gtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagcttatcaactatt 181  Q
    ||||||||||||||||||||| | |||||  || ||||||| ||||||  || ||||||| ||||||||||||| |||||    
T  925986 gtcatttcatatttataagctggttcaaccactcattttaccaaacacaacaaattcaatcagctagcttatcatctatt 926065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 106 - 173
Target Start/End: Original strand, 37740756 - 37740823
Alignment:
Q  106 tttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagcttat 173  Q
    ||||||||||| ||||||| ||||| ||||||| ||  ||||||| || ||||||| |||||||||||    
T  37740756 tttcatatttaaaagctagttcaacagctaattgtatcaaacactacaaattcaatcagctagcttat 37740823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 100 - 174
Target Start/End: Complemental strand, 34812739 - 34812665
Alignment:
Q  100 atgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagcttatc 174  Q
    ||||||||||||||||||||||||| |||||  | |||||||||||||||| || ||||||| ||||||||||||    
T  34812739 atgtcatttcatatttataagctagttcaaccacaaattttactaaacactgcaaattcaatcagctagcttatc 34812665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 107 - 174
Target Start/End: Original strand, 52327445 - 52327512
Alignment:
Q  107 ttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagcttatc 174  Q
    |||||||||||||||||| ||||||||||||||||| ||||||| || ||||||  ||||||||||||    
T  52327445 ttcatatttataagctagttcaactgctaattttaccaaacactacaaattcaaccagctagcttatc 52327512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 306 - 381
Target Start/End: Complemental strand, 30254085 - 30254010
Alignment:
Q  306 ttctcgaattaacttgacctgtttgctctgctctattagaaagtttgccttagctatagatgtgctgacatggatc 381  Q
    ||||| ||||||||||||||| ||||||||||||||| ||| |||| ||||| ||||| | ||||| |||| ||||    
T  30254085 ttctcaaattaacttgacctggttgctctgctctattggaatgtttaccttaactatatacgtgctcacatagatc 30254010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 100 - 182
Target Start/End: Original strand, 39276515 - 39276597
Alignment:
Q  100 atgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagcttatcaactatta 182  Q
    ||||||||| | ||||||||||||| |||||  |||||||||| ||||||| || ||||||| |||||| |||| | ||||||    
T  39276515 atgtcatttaagatttataagctagttcaaccactaattttaccaaacactacaaattcaatcagctaggttataagctatta 39276597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 132 - 180
Target Start/End: Original strand, 30070328 - 30070376
Alignment:
Q  132 gctaattttactaaacactccatattcaattagctagcttatcaactat 180  Q
    ||||||||||| ||||||| || |||||||||||||||||||| |||||    
T  30070328 gctaattttaccaaacactacaaattcaattagctagcttatccactat 30070376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 159
Target Start/End: Complemental strand, 44555638 - 44555579
Alignment:
Q  100 atgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattca 159  Q
    ||||||||||||||||||||| ||| | ||| ||||||||||| ||||||| || |||||    
T  44555638 atgtcatttcatatttataaggtagtttaaccgctaattttaccaaacactacagattca 44555579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 100 - 174
Target Start/End: Complemental strand, 2103262 - 2103188
Alignment:
Q  100 atgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagcttatc 174  Q
    ||||||||| ||||||||||| | | |||||   ||||||||| ||||||| || ||||||| ||||||||||||    
T  2103262 atgtcattttatatttataagtttgttcaaccattaattttaccaaacactacaaattcaataagctagcttatc 2103188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 162
Target Start/End: Original strand, 41758661 - 41758718
Alignment:
Q  105 atttcatatttataagctagctcaactgctaattttactaaacactccatattcaatt 162  Q
    |||||||||||||| | ||| |||||||||||||||||  |||||| || ||||||||    
T  41758661 atttcatatttatacgttagttcaactgctaattttaccgaacactacaaattcaatt 41758718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 116 - 172
Target Start/End: Complemental strand, 27611868 - 27611812
Alignment:
Q  116 ataagctagctcaactgctaattttactaaacactccatattcaattagctagctta 172  Q
    ||||| ||| ||||||||||||||||| ||||||| || ||||||| | ||||||||    
T  27611868 ataagttagttcaactgctaattttaccaaacactacaaattcaatcaactagctta 27611812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 100 - 172
Target Start/End: Original strand, 37713455 - 37713527
Alignment:
Q  100 atgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagctta 172  Q
    ||||||||||||||||||||||||| ||  |  ||||||||||  |||| | || |||||||| |||||||||    
T  37713455 atgtcatttcatatttataagctagttccgcaactaattttacccaacattacaaattcaatttgctagctta 37713527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 100 - 148
Target Start/End: Original strand, 50133287 - 50133335
Alignment:
Q  100 atgtcatttcatatttataagctagctcaactgctaattttactaaaca 148  Q
    ||||||||| ||||||||||||||| |||||  |||||||||| |||||    
T  50133287 atgtcatttgatatttataagctagttcaacatctaattttaccaaaca 50133335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 100 - 174
Target Start/End: Original strand, 29052699 - 29052773
Alignment:
Q  100 atgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagcttatc 174  Q
    ||||||||||||||||||||||||| | ||| ||| ||||||| ||||||| || ||||||| ||||||||||||    
T  29052699 atgtcatttcatatttataagctaggtgaaccgcttattttaccaaacactgcaaattcaatcagctagcttatc 29052773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 101 - 150
Target Start/End: Complemental strand, 8014488 - 8014439
Alignment:
Q  101 tgtcatttcatatttataagctagctcaactgctaattttactaaacact 150  Q
    ||||||||||| |||||||||||| || |||||||||||||| |||||||    
T  8014488 tgtcatttcatgtttataagctagttcgactgctaattttaccaaacact 8014439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 100 - 174
Target Start/End: Original strand, 34544426 - 34544500
Alignment:
Q  100 atgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagcttatc 174  Q
    ||||||||||||||||||||||||| |||||  |||||| ||  ||||||| || ||||||   |||||||||||    
T  34544426 atgtcatttcatatttataagctagttcaaccactaattgtatcaaacactacaaattcaacccgctagcttatc 34544500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 150
Target Start/End: Complemental strand, 2748351 - 2748302
Alignment:
Q  101 tgtcatttcatatttataagctagctcaactgctaattttactaaacact 150  Q
    ||||||||||||||||||| |||| ||||| | |||||||| ||||||||    
T  2748351 tgtcatttcatatttataaactagttcaaccgttaattttattaaacact 2748302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 100 - 174
Target Start/End: Complemental strand, 30804441 - 30804367
Alignment:
Q  100 atgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagcttatc 174  Q
    ||||||||||||| |||||| |||| ||||| ||||||||||| ||||||| || |||||||||| |||||||||    
T  30804441 atgtcatttcatacttataatctagttcaaccgctaattttacgaaacactacaaattcaattagttagcttatc 30804367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 103 - 150
Target Start/End: Original strand, 42139530 - 42139577
Alignment:
Q  103 tcatttcatatttataagctagctcaactgctaattttactaaacact 150  Q
    |||||||||||||||||||||| ||||||||||||||||| |||||||    
T  42139530 tcatttcatatttataagctagttcaactgctaattttaccaaacact 42139577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 100 - 180
Target Start/End: Original strand, 8752611 - 8752690
Alignment:
Q  100 atgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagcttatcaactat 180  Q
    ||||||||||||||||||||||||  |||| |||  ||||||| ||| ||| || |||||||||| |||||||||||||||    
T  8752611 atgtcatttcatatttataagctaattcaaatgcagattttaccaaa-actacaaattcaattagttagcttatcaactat 8752690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 100 - 164
Target Start/End: Original strand, 15967966 - 15968030
Alignment:
Q  100 atgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattag 164  Q
    ||||||||||||||||||||||||| ||||| ||||||||||| || |||| || ||| ||||||    
T  15967966 atgtcatttcatatttataagctagttcaaccgctaattttaccaagcactacaaattgaattag 15968030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 100 - 174
Target Start/End: Complemental strand, 5946633 - 5946559
Alignment:
Q  100 atgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagcttatc 174  Q
    ||||||||||||||||| ||||||  |||||  ||||||| ||||| |||| |||||||||| || |||||||||    
T  5946633 atgtcatttcatatttacaagctacttcaacaactaatttgactaagcactacatattcaatcagttagcttatc 5946559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 100 - 142
Target Start/End: Original strand, 27679233 - 27679275
Alignment:
Q  100 atgtcatttcatatttataagctagctcaactgctaattttac 142  Q
    ||||||||||||||||||||||||| ||||| |||||||||||    
T  27679233 atgtcatttcatatttataagctagttcaaccgctaattttac 27679275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 102 - 146
Target Start/End: Complemental strand, 33651228 - 33651184
Alignment:
Q  102 gtcatttcatatttataagctagctcaactgctaattttactaaa 146  Q
    |||||||||||||| |||| ||| |||||||||||||||||||||    
T  33651228 gtcatttcatatttgtaagttagttcaactgctaattttactaaa 33651184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 147
Target Start/End: Original strand, 21721922 - 21721969
Alignment:
Q  100 atgtcatttcatatttataagctagctcaactgctaattttactaaac 147  Q
    ||||||||| ||||||||||||||  ||||||||||||||||| ||||    
T  21721922 atgtcattttatatttataagctatttcaactgctaattttaccaaac 21721969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 101 - 167
Target Start/End: Original strand, 27863873 - 27863939
Alignment:
Q  101 tgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagcta 167  Q
    |||||||||| |||||||||||| |||||| | ||||||||  ||||||| || ||||||| |||||    
T  27863873 tgtcatttcacatttataagctacctcaaccggtaattttatcaaacactacaaattcaatcagcta 27863939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 141
Target Start/End: Original strand, 18491969 - 18492010
Alignment:
Q  100 atgtcatttcatatttataagctagctcaactgctaatttta 141  Q
    ||||||||||||||| ||||| ||| ||||||||||||||||    
T  18491969 atgtcatttcatattaataagttagttcaactgctaatttta 18492010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 161
Target Start/End: Original strand, 21938041 - 21938102
Alignment:
Q  100 atgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaat 161  Q
    ||||||||| ||||||||||| ||  ||||| | ||||||||||||||||| || |||||||    
T  21938041 atgtcattttatatttataagatatttcaaccgttaattttactaaacactgcaaattcaat 21938102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 105 - 174
Target Start/End: Original strand, 2525296 - 2525365
Alignment:
Q  105 atttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagcttatc 174  Q
    |||||||||||||||||||| ||| ||||||||||||| ||||| | || ||||||| ||||||||||||    
T  2525296 atttcatatttataagctagttcagctgctaattttaccaaacaatacaaattcaatcagctagcttatc 2525365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 115 - 173
Target Start/End: Original strand, 15050624 - 15050682
Alignment:
Q  115 tataagctagctcaactgctaattttactaaacactccatattcaattagctagcttat 173  Q
    |||||| ||| ||||||||||||||||||||||||| || ||||||| |||||||||||    
T  15050624 tataagttagttcaactgctaattttactaaacactgcagattcaataagctagcttat 15050682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 100 - 170
Target Start/End: Original strand, 15050970 - 15051040
Alignment:
Q  100 atgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagct 170  Q
    ||||||||||||| | ||||||||| |||||  |||||||||| |||||||| | ||||||| ||||||||    
T  15050970 atgtcatttcatactcataagctagttcaaccactaattttaccaaacactctaaattcaatcagctagct 15051040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 102 - 180
Target Start/End: Original strand, 3837088 - 3837161
Alignment:
Q  102 gtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagcttatcaactat 180  Q
    |||||| |||||||||||||||  ||||| ||||||||||| ||||||| ||     ||||| ||||||||||||||||    
T  3837088 gtcattacatatttataagctacttcaacggctaattttaccaaacactaca-----aattatctagcttatcaactat 3837161  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 100 - 180
Target Start/End: Complemental strand, 13438386 - 13438306
Alignment:
Q  100 atgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagcttatcaactat 180  Q
    ||||||||| ||||||||||| ||| | ||| |||||||| || ||||||| || ||| ||| |||||||| |||| ||||    
T  13438386 atgtcattttatatttataagttagtttaaccgctaatttaaccaaacactacaaatttaataagctagctcatcagctat 13438306  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 100 - 167
Target Start/End: Original strand, 17259609 - 17259676
Alignment:
Q  100 atgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagcta 167  Q
    ||||||||||||| ||||||||||| ||||| |||||||||||||| |||| || ||||||| |||||    
T  17259609 atgtcatttcatacttataagctagttcaaccgctaattttactaaccactgcaaattcaatcagcta 17259676  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 100 - 173
Target Start/End: Original strand, 31677296 - 31677369
Alignment:
Q  100 atgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagcttat 173  Q
    |||||||||||||||| |||||||| ||||| |||| |||||| |||||||  | ||||||| |||||||||||    
T  31677296 atgtcatttcatatttgtaagctagttcaaccgctagttttaccaaacactgtaaattcaatcagctagcttat 31677369  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 107 - 151
Target Start/End: Complemental strand, 13838785 - 13838741
Alignment:
Q  107 ttcatatttataagctagctcaactgctaattttactaaacactc 151  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||    
T  13838785 ttcataattataagctagttcaactgctaattttactaaacactc 13838741  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 306 - 364
Target Start/End: Original strand, 11237677 - 11237735
Alignment:
Q  306 ttctcgaattaacttgacctgtttgctctgctctattagaaagtttgccttagctatag 364  Q
    ||||| ||||||||||||||| ||||||| ||||||||||| |||| ||||| ||||||    
T  11237677 ttctcaaattaacttgacctggttgctctactctattagaatgtttaccttaactatag 11237735  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 101 - 174
Target Start/End: Complemental strand, 6462311 - 6462239
Alignment:
Q  101 tgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagcttatc 174  Q
    ||||||||||||||||||| |||  | | | ||||||||||||||||||| || ||||||| ||||||||||||    
T  6462311 tgtcatttcatatttataacctaa-tgagccgctaattttactaaacactacaaattcaatcagctagcttatc 6462239  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 104 - 161
Target Start/End: Original strand, 32046916 - 32046973
Alignment:
Q  104 catttcatatttataagctagctcaactgctaattttactaaacactccatattcaat 161  Q
    ||||||||||||| ||||||| ||||| |||||| |||| |||||||||| |||||||    
T  32046916 catttcatatttaaaagctagttcaaccgctaatattaccaaacactccaaattcaat 32046973  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 100 - 142
Target Start/End: Complemental strand, 1621481 - 1621439
Alignment:
Q  100 atgtcatttcatatttataagctagctcaactgctaattttac 142  Q
    ||||||||||||||||||||||||  ||||| |||||||||||    
T  1621481 atgtcatttcatatttataagctacttcaaccgctaattttac 1621439  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 101 - 171
Target Start/End: Original strand, 9005331 - 9005401
Alignment:
Q  101 tgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagctt 171  Q
    |||||||||||| || |||||||  ||||||| ||||| ||||||||||| || ||||||| || ||||||    
T  9005331 tgtcatttcatacttttaagctacttcaactgttaattgtactaaacactacaaattcaatcagttagctt 9005401  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 100 - 150
Target Start/End: Original strand, 17902790 - 17902840
Alignment:
Q  100 atgtcatttcatatttataagctagctcaactgctaattttactaaacact 150  Q
    |||||| | |||||||||||||||| |||||||||| |||||| |||||||    
T  17902790 atgtcaatacatatttataagctagttcaactgctagttttaccaaacact 17902840  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 100 - 174
Target Start/End: Original strand, 34640181 - 34640255
Alignment:
Q  100 atgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagcttatc 174  Q
    ||||||||||||||||||||||||    |||  |||||||||| ||||| | || ||||||| ||||||||||||    
T  34640181 atgtcatttcatatttataagctacaataaccactaattttaccaaacattacaaattcaataagctagcttatc 34640255  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 161
Target Start/End: Original strand, 28363542 - 28363603
Alignment:
Q  100 atgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaat 161  Q
    ||||||||||||| |||||| |||| ||||| |||||| |||| ||||||| || |||||||    
T  28363542 atgtcatttcatacttataaactagttcaacagctaatattaccaaacactacaaattcaat 28363603  T

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Target: scaffold0022 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 100 - 173
Target Start/End: Complemental strand, 84911 - 84838
Alignment:
Q  100 atgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagcttat 173  Q
    |||||||||||||| |||||||||  ||||||||||||||||  ||| ||| || | ||||| |||||||||||    
T  84911 atgtcatttcatatctataagctacttcaactgctaattttaacaaatactacaaaatcaataagctagcttat 84838  T

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