View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20756_low_24 (Length: 249)
Name: NF20756_low_24
Description: NF20756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20756_low_24 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 29660723 - 29660475
Alignment:
| Q |
1 |
cacttctaatgaaggaagtagtttgttgctcttggttgaacacagaagttgatttcataacagctcaatataatcttacagaaagaataaacaggcaagt |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29660723 |
cacttctaatgaaggaaatagtttgttgctcttggttgaacacagaagttgatttcataacagctcaatataatcttacagaaagaataaacaggcaagt |
29660624 |
T |
|
| Q |
101 |
gaagatggttgtttactgaaaatcaaacttactattttgctgaaatgaaatgcacattattag--aaatccaagaagag--nnnnnnnngtataaactaa |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
29660623 |
gaagatggttgtttactgaaaatcaaacttactattttgctgaaatgaaatgcacattattagaaaaatccaagaagagaaaaaaaaaagtataaactaa |
29660524 |
T |
|
| Q |
197 |
ttctgtttatatacaataaacagacacctttgtcgtttattctgtgatc |
245 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
29660523 |
ttctgtttatatacaataagcagacacctttgtcgtttattctgtgatc |
29660475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University