View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20757_low_1 (Length: 525)
Name: NF20757_low_1
Description: NF20757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20757_low_1 |
 | |
|
| [»] scaffold0176 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 468; Significance: 0; HSPs: 28)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 12 - 511
Target Start/End: Original strand, 36744783 - 36745282
Alignment:
| Q |
12 |
atcatcaagggtgaagtctacaagatgactgcaattagaacacagactctgaagaagtttctgcttcacatcaactagatgcaacacaagagttctcaag |
111 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
36744783 |
atcatcaagggtgaagtctaaaagatgactgcaattagaagacagactctgaagaagtttctgcttcacatcaactagatggaacacaagagttctcaag |
36744882 |
T |
|
| Q |
112 |
ttttttaatccagataagttcataggttctaatacaagacagttttgtaggtgcagatacgtgagagaatcattgtcagataagagagtaagggaaaatt |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36744883 |
ttttttaatccagataagttcataggttctaatacaagacagttttgtaggtgcagatacgtgagagaatcattgtcagataagagagtaagggaaaatt |
36744982 |
T |
|
| Q |
212 |
tgtatggcaaaatagaatgagtagtatcatttgtttcagatgagaagagaagttcaatacgtttggcactcttagcaattcctttggagatcaatctatc |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
36744983 |
tgtatggcaaaatagaatgagtagtatcatttgtttcagatgagaagagaagttcaatacgtttggcacccttagcaattcctttggagatcaatctatc |
36745082 |
T |
|
| Q |
312 |
aacgacatccctgtgttcattgcctaatggaaattttactcggattgaactgatcatgtcacctttataatggagcacaaattgatccaatctggtggca |
411 |
Q |
| |
|
|| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36745083 |
aatggcatccctgtgttcattgcctaatggaaattttactcggattgaactgatcatgtcacctttataatggagcacaaattgatccaatctggtggca |
36745182 |
T |
|
| Q |
412 |
aattcagattgaaagtgaaacctttgaaagaggggaaggctttttggtaagccttgaattgtgttatagtcaaacattgtatggagatcaaagttgagtt |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36745183 |
aattcagattgaaagtgaaacctttgaaagagtggaaggctttttggtaagtcttgaattgtgttatagtcaaacattgtatggagatcaaagttgagtt |
36745282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 12 - 509
Target Start/End: Complemental strand, 42796923 - 42796426
Alignment:
| Q |
12 |
atcatcaagggtgaagtctacaagatgactgcaattagaacacagactctgaagaagtttctgcttcacatcaactagatgcaacacaagagttctcaag |
111 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
42796923 |
atcatcaagggtgaagtctgcaagatggctgcaattggaacacagactctgaagcagtttctgattcacatcaactagatgcaacacaagagttctcaaa |
42796824 |
T |
|
| Q |
112 |
ttttttaatccagataagttcataggttctaatacaagacagttttgtaggtgcagatacgtgagagaatcattgtcagataagagagtaagggaaaatt |
211 |
Q |
| |
|
||||| |||||||| |||| || |||||||| || | |||||||| ||||||| |||||| ||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
42796823 |
tttttgaatccagagaagtccaaaggttctagtaggaagcagttttgcaggtgcatatacgtcagagaatcaaagtcagataagagagtaaggggaaatt |
42796724 |
T |
|
| Q |
212 |
tgtatggcaaaatagaatgagtagtatcatttgtttcagatgagaagagaagttcaatacgtttggcactcttagcaattcctttggagatcaatctatc |
311 |
Q |
| |
|
|||||||| |||||||| | |||||||||||||||||||||| ||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
42796723 |
tgtatggcggaatagaatcaatagtatcatttgtttcagatgacaagagaagttcaatatgtttgacacccttagcaattcctttggagatcaatctatc |
42796624 |
T |
|
| Q |
312 |
aacgacatccctgtgttcattgcctaatggaaattttactcggattgaactgatcatgtcacctttataatggagcacaaattgatccaatctggtggca |
411 |
Q |
| |
|
|| | ||||||| |||||||||||||||||||| |||||||||||||||| ||| || |||||||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
42796623 |
aatggcatccctatgttcattgcctaatggaaaatttactcggattgaacggatgatagcacctttataatggagcataaattgatccaatcttgtggca |
42796524 |
T |
|
| Q |
412 |
aattcagattgaaagtgaaacctttgaaagaggggaaggctttttggtaagccttgaattgtgttatagtcaaacattgtatggagatcaaagttgag |
509 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||| ||||| | ||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
42796523 |
aattgagattgaaagtgaaatctttgaaagagtggaagtgtgtttggtaagtcttgaattgtgttatagtcaaacatggtatgaagatcaaagttgag |
42796426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 12 - 506
Target Start/End: Complemental strand, 34146502 - 34146008
Alignment:
| Q |
12 |
atcatcaagggtgaagtctacaagatgactgcaattagaacacagactctgaagaagtttctgcttcacatcaactagatgcaacacaagagttctcaag |
111 |
Q |
| |
|
|||||||||||||||||| ||||| || ||||||| ||||||| | |||||| |||| | | ||||||| |||| | || ||||||||||||||||| |
|
|
| T |
34146502 |
atcatcaagggtgaagtcaacaaggtgtttgcaatttgaacacaaagtctgaacaagtgtattcttcacaataacttgttgtaacacaagagttctcaaa |
34146403 |
T |
|
| Q |
112 |
ttttttaatccagataagttcataggttctaatacaagacagttttgtaggtgcagatacgtgagagaatcattgtcagataagagagtaagggaaaatt |
211 |
Q |
| |
|
|||||||||| ||| |||| | |||| | || || |||||||||||||||| ||| || | ||||||||| | || ||||||| |||||||||||| |
|
|
| T |
34146402 |
ttttttaatcgagagaagtatctgggtttgactaagaggcagttttgtaggtgcaaataggtcacagaatcattcttaggtaagagaataagggaaaatt |
34146303 |
T |
|
| Q |
212 |
tgtatggcaaaatagaatgagtagtatcatttgtttcagatgagaagagaagttcaatacgtttggcactcttagcaattcctttggagatcaatctatc |
311 |
Q |
| |
|
||||||||||||||||| |||||||||| |||||||| | ||||||||||||| |||| ||| ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
34146302 |
tgtatggcaaaatagaaatagtagtatcagttgtttcaaaagagaagagaagttgaatatgttcggcacccttagcaattcctttggagatcaatctatc |
34146203 |
T |
|
| Q |
312 |
aacgacatccctgtgttcattgcctaatggaaattttactcggattgaactgatcatgtcacctttataatggagcacaaattgatccaatctggtggca |
411 |
Q |
| |
|
|| ||||||||| |||||||| | |||||||||||||||||| || |||| ||||||| |||||||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
34146202 |
aatgacatccctatgttcattacataatggaaattttactcgaatggaacggatcatggcacctttataatggagcataaattgatccaatcttgtggca |
34146103 |
T |
|
| Q |
412 |
aattcagattgaaagtgaaacctttgaaagaggggaaggctttttggtaagccttgaattgtgttatagtcaaacattgtatggagatcaaagtt |
506 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |||||| ||| || ||| ||||| ||||||||||||| |||| |||| |||||| ||||| |
|
|
| T |
34146102 |
aattcagattgaaagtgaaacctttgacagagaggaaggatttgtgacaagtcttgatctgtgttatagtcagacatggtatagagatcgaagtt |
34146008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 14 - 506
Target Start/End: Complemental strand, 33860570 - 33860078
Alignment:
| Q |
14 |
catcaagggtgaagtctacaagatgactgcaattagaacacagactctgaagaagtttctgcttcacatcaactagatgcaacacaagagttctcaagtt |
113 |
Q |
| |
|
|||||||||| ||||| ||||| || |||| || ||||||| | |||||| ||| ||| ||||||| || | | || ||||||||||||||||| || |
|
|
| T |
33860570 |
catcaagggttaagtcaacaaggtgtttgcactttgaacacaaagtctgaacgagtgtcttcttcacaataatttgttgtaacacaagagttctcaaatt |
33860471 |
T |
|
| Q |
114 |
ttttaatccagataagttcataggttctaatacaagacagttttgtaggtgcagatacgtgagagaatcattgtcagataagagagtaagggaaaatttg |
213 |
Q |
| |
|
|||||||| ||| |||| | |||| | || || |||||||||||||||| ||| || | ||||||||| | || ||||||| |||||||||||||| |
|
|
| T |
33860470 |
ttttaatcgagagaagtatctgggtttgactaagaggcagttttgtaggtgcaaataggtcacagaatcattctgaggtaagagaataagggaaaatttg |
33860371 |
T |
|
| Q |
214 |
tatggcaaaatagaatgagtagtatcatttgtttcagatgagaagagaagttcaatacgtttggcactcttagcaattcctttggagatcaatctatcaa |
313 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||||| ||||||||||||| |||| ||| ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
33860370 |
tatggcaaaatagaaatagtagtatcagttgtttcagaagagaagagaagttgaatatgttcggcacccttagcaattcctttggagatcaatctatcaa |
33860271 |
T |
|
| Q |
314 |
cgacatccctgtgttcattgcctaatggaaattttactcggattgaactgatcatgtcacctttataatggagcacaaattgatccaatctggtggcaaa |
413 |
Q |
| |
|
||||||||| |||||||| | |||||||||||||||||| || |||| ||||||| |||||||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
33860270 |
tgacatccctatgttcattacataatggaaattttactcgaatggaacggatcatggcacctttataatggagcataaattgatccaatcttgtggcaaa |
33860171 |
T |
|
| Q |
414 |
ttcagattgaaagtgaaacctttgaaagaggggaaggctttttggtaagccttgaattgtgttatagtcaaacattgtatggagatcaaagtt |
506 |
Q |
| |
|
||||||||||||||||||||||||| |||| |||||| ||| || ||| ||||| ||||||||||||| |||| |||| |||||| ||||| |
|
|
| T |
33860170 |
ttcagattgaaagtgaaacctttgacagagaggaaggatttgtgacaagtcttgatctgtgttatagtcagacatggtatagagatcgaagtt |
33860078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 94 - 506
Target Start/End: Original strand, 34181015 - 34181427
Alignment:
| Q |
94 |
aacacaagagttctcaagttttttaatccagataagttcataggttctaatacaagacagttttgtaggtgcagatacgtgagagaatcattgtcagata |
193 |
Q |
| |
|
||||||||||||||||| |||||||||| ||| |||| | |||| | || || |||||||||||||||| ||| || | ||||||||| | || || |
|
|
| T |
34181015 |
aacacaagagttctcaaattttttaatcgagagaagtatctgggtttgactaagaggcagttttgtaggtgcaaataggtcacagaatcattcttaggta |
34181114 |
T |
|
| Q |
194 |
agagagtaagggaaaatttgtatggcaaaatagaatgagtagtatcatttgtttcagatgagaagagaagttcaatacgtttggcactcttagcaattcc |
293 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||||||||| |||||||| | ||||||||||||| |||| ||| ||||| |||||||||||| |
|
|
| T |
34181115 |
agagaataagggaaaatttgtatggcaaaatagaaatagtagtatcagttgtttcaaaagagaagagaagttgaatatgttcggcacccttagcaattcc |
34181214 |
T |
|
| Q |
294 |
tttggagatcaatctatcaacgacatccctgtgttcattgcctaatggaaattttactcggattgaactgatcatgtcacctttataatggagcacaaat |
393 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||||| | |||||||||||||||||| || |||| ||||||| |||||||||||||||||| |||| |
|
|
| T |
34181215 |
tttggagatcaatctatcaatgacatccctatgttcattacataatggaaattttactcgaatggaacggatcatggcacctttataatggagcataaat |
34181314 |
T |
|
| Q |
394 |
tgatccaatctggtggcaaattcagattgaaagtgaaacctttgaaagaggggaaggctttttggtaagccttgaattgtgttatagtcaaacattgtat |
493 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||| ||| || ||| ||||| ||||||||||||| |||| |||| |
|
|
| T |
34181315 |
tgatccaatcttgtggcaaattcagattgaaagtgaaacctttgacagagaggaaggatttgtgacaagtcttgatctgtgttatagtcagacatggtat |
34181414 |
T |
|
| Q |
494 |
ggagatcaaagtt |
506 |
Q |
| |
|
|||||| ||||| |
|
|
| T |
34181415 |
agagatcgaagtt |
34181427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 14 - 509
Target Start/End: Original strand, 35073225 - 35073717
Alignment:
| Q |
14 |
catcaagggtgaagtctacaagatgactgcaattagaacacagactctgaagaagtttctgcttcacatcaactagatgcaacacaagagttctcaagtt |
113 |
Q |
| |
|
|||||||| | |||||||||||||| ||||||| || ||||||||||||| |||||| || |||||| || |||||||||||||||||||||||| || |
|
|
| T |
35073225 |
catcaaggatcaagtctacaagatgggtgcaattggagcacagactctgaaccagtttcggcgtcacattaattagatgcaacacaagagttctcaaatt |
35073324 |
T |
|
| Q |
114 |
ttttaatccagataagttcataggttctaatacaagacagttttgtaggtgcagatacgtgagagaatcattgtcagataagagagtaagggaaaatttg |
213 |
Q |
| |
|
|| |||||||| ||| || | ||||| || ||||||||||||||||||| ||||||||||||||| |||||||||||||| ||| |||| || |
|
|
| T |
35073325 |
attgaatccagagtagtccagatgttctgcactgaggtagttttgtaggtgcagataagtgagagaatcattgccagataagagagtagggggaaatatg |
35073424 |
T |
|
| Q |
214 |
tatggcaaaatagaatgagtagtatcatttgtttcagatgagaagagaagttcaatacgtttggcactcttagcaattcctttggagatcaatctat--- |
310 |
Q |
| |
|
|||||||||| | ||| ||||||| |||||||||||||| |||||| ||| ||||||||||| ||||||||||||||||| |
|
|
| T |
35073425 |
tatggcaaaacaaaat------------------cagatgacaagagaagttcaattcgtttgacacccttagcaattcgtttggagatcaatctattaa |
35073506 |
T |
|
| Q |
311 |
---caac------gacatccctgtgttca---ttgcctaatggaaattttactcggattgaactgatcatgtcacctttataatggagcacaaattgatc |
398 |
Q |
| |
|
|||| | |||||| ||||||| || |||||||||| || ||||||||||||||||| ||| ||||||||||||||||| ||||||||| |
|
|
| T |
35073507 |
tggcaacattaatggcatccccgtgttcagaatttactaatggaaaattgactcggattgaactgatgatgggacctttataatggagcataaattgatc |
35073606 |
T |
|
| Q |
399 |
caatctggtggcaaattcagattgaaagtgaaacctttgaaagaggggaaggctttttggtaagccttgaattgtgttatagtcaaacattgtatggaga |
498 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||| |||||||||| |||||| | ||||||||| ||||| ||||||||||||||||||| ||||| ||| |
|
|
| T |
35073607 |
caatcttgtggtaaattcagattgaaagtgaaatatttgaaagagtggaaggatgtttggtaagtcttgagttgtgttatagtcaaacatggtatgaaga |
35073706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 14 - 509
Target Start/End: Original strand, 35099562 - 35100069
Alignment:
| Q |
14 |
catcaagggtgaagtctacaagatgactgcaattagaacacagactctgaagaagtttctgcttcacatcaactagatgcaacacaagagttctcaagtt |
113 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||| || || ||||||||||| |||||| || |||||| || |||||||||||||||||||||||| || |
|
|
| T |
35099562 |
catcaagggtcaagtctacaagatgggtgcaattggagcagagactctgaagcagtttcggcgtcacattaattagatgcaacacaagagttctcaaatt |
35099661 |
T |
|
| Q |
114 |
ttttaatccagataagttcataggttctaatacaagacagttttgtaggtgcagatacgtgagagaatcattgtcagataagagagtaagggaaaatttg |
213 |
Q |
| |
|
|| |||||||| || || | ||||| || |||||||||||||||||||| ||||||||||||||| |||||||||||||| ||| |||| || |
|
|
| T |
35099662 |
attgaatccagagtggtccagatgttctgcactgaggcagttttgtaggtgcagataagtgagagaatcattgccagataagagagtagggggaaatatg |
35099761 |
T |
|
| Q |
214 |
tatg-gcaaaata-gaatgagtagtatcatttgtttcagatgagaagagaagttcaatacgtttggcactcttagcaattcctttggagatcaatctatc |
311 |
Q |
| |
|
|||| | ||||| | ||| | | || |||||||| |||||||||||||| |||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
35099762 |
tatgggggaaatatgtatggcaa--aacaaaa---tcagatgacaagagaagttcaattcgtttgacacccttagcaattcctttggagatcaatctatt |
35099856 |
T |
|
| Q |
312 |
aacgaca------------tccctgtgttca---ttgcctaatggaaattttactcggattgaactgatcatgtcacctttataatggagcacaaattga |
396 |
Q |
| |
|
|| | || |||| ||||||| || ||||||||||||| ||||||||||||||||| ||| ||||||||||||||||| ||||||| |
|
|
| T |
35099857 |
aatggcaccattaatggcatccccgtgttcagaatttactaatggaaatttgactcggattgaactgatgatgggacctttataatggagcataaattga |
35099956 |
T |
|
| Q |
397 |
tccaatctggtggcaaattcagattgaaagtgaaacctttgaaagaggggaaggctttttggtaagccttgaattgtgttatagtcaaacattgtatgga |
496 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||| |||||||||| |||||| | ||||||||| |||||| |||||||||||||||||| ||||| | |
|
|
| T |
35099957 |
tccaatcttgtggtaaattcagattgaaagtgaaatatttgaaagagtggaaggatgtttggtaagtcttgaagtgtgttatagtcaaacatggtatgaa |
35100056 |
T |
|
| Q |
497 |
gatcaaagttgag |
509 |
Q |
| |
|
||||||||||||| |
|
|
| T |
35100057 |
gatcaaagttgag |
35100069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 14 - 509
Target Start/End: Original strand, 35084261 - 35084768
Alignment:
| Q |
14 |
catcaagggtgaagtctacaagatgactgcaattagaacacagactctgaagaagtttctgcttcacatcaactagatgcaacacaagagttctcaagtt |
113 |
Q |
| |
|
|||||||||| |||||||||||| | ||||||| || |||||||||||||| |||||| || |||||| || ||||||||||||| |||||||||| || |
|
|
| T |
35084261 |
catcaagggtcaagtctacaagacgggtgcaattggagcacagactctgaagcagtttcggcgtcacattaattagatgcaacacaggagttctcaaatt |
35084360 |
T |
|
| Q |
114 |
ttttaatccagataagttcataggttctaatacaagacagttttgtaggtgcagatacgtgagagaatcattgtcagataagagagtaagggaaaatttg |
213 |
Q |
| |
|
|| |||||||| ||| || | ||||| || |||||||||||||||||||| ||||||||||||||| |||||||||||||| ||| ||| || |
|
|
| T |
35084361 |
attgaatccagagtagtccagatgttctgcactgaggcagttttgtaggtgcagataagtgagagaatcattgccagataagagagtaggggggaatatg |
35084460 |
T |
|
| Q |
214 |
tatg-gcaaaata-gaatgagtagtatcatttgtttcagatgagaagagaagttcaatacgtttggcactcttagcaattcctttggagatcaatctat- |
310 |
Q |
| |
|
|||| | ||||| | ||| | | || |||||||| |||||||||||||| |||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
35084461 |
tatgggggaaatatgtatggcaa--aacaaaa---tcagatgacaagagaagttcaattcgtttgacacccttagcaattcctttggagatcaatctatt |
35084555 |
T |
|
| Q |
311 |
-----caac------gacatccctgtgttca---ttgcctaatggaaattttactcggattgaactgatcatgtcacctttataatggagcacaaattga |
396 |
Q |
| |
|
|||| | |||||| ||||||| || |||||||||| || ||||||||||||||||| ||| ||||||||||||||||| ||||||| |
|
|
| T |
35084556 |
aatggcaacattaatggcatccccgtgttcagaatttactaatggaaaattgactcggattgaactgatgatgggacctttataatggagcataaattga |
35084655 |
T |
|
| Q |
397 |
tccaatctggtggcaaattcagattgaaagtgaaacctttgaaagaggggaaggctttttggtaagccttgaattgtgttatagtcaaacattgtatgga |
496 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||| |||||||||| |||||| | ||||||||| ||||||||||||||||||||||||| ||||| | |
|
|
| T |
35084656 |
tccaatcttgtggtaaattcagattgaaagtgaaatatttgaaagagtggaaggatgtttggtaagtcttgaattgtgttatagtcaaacatggtatgaa |
35084755 |
T |
|
| Q |
497 |
gatcaaagttgag |
509 |
Q |
| |
|
||||||||||||| |
|
|
| T |
35084756 |
gatcaaagttgag |
35084768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 235 - 424
Target Start/End: Complemental strand, 43027400 - 43027207
Alignment:
| Q |
235 |
gtatcatttgtttcagatgagaagagaagttcaatacgtttggcactctt----agcaattcctttggagatcaatctatcaacgacatccctgtgttca |
330 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |||||| | | ||| ||||||||||||||||||||||||||||| | ||||||| |||||| |
|
|
| T |
43027400 |
gtatcatttgtttcagatgacaagagaagttcaattcgtttgacccccttagcaagcaattcctttggagatcaatctatcaatggcatccctatgttca |
43027301 |
T |
|
| Q |
331 |
ttgcctaatggaaattttactcggattgaactgatcatgtcacctttataatggagcacaaattgatccaatctggtggcaaattcagattgaa |
424 |
Q |
| |
|
|| |||||||||||||||||||||||||||| ||| ||| |||||||||||||||||| ||||||||| |||| |||||||||| |||||||| |
|
|
| T |
43027300 |
ttacctaatggaaattttactcggattgaacggatgatggcacctttataatggagcataaattgatcgaatcctgtggcaaattgagattgaa |
43027207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 15 - 506
Target Start/End: Original strand, 38157606 - 38158100
Alignment:
| Q |
15 |
atcaagggtgaagtctacaagatgactgcaattagaacacagactctgaagaagtttctgcttcacatcaactagatgcaacacaagagttctcaagttt |
114 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||| ||| || |||||| || || || | ||||| |||||| |||||||||||||||||||| || |
|
|
| T |
38157606 |
atcaagggtgaagtctacaagatggttgcaatttgaaaacaaaccctgaagcagattttgatgcacatgaactagttgcaacacaagagttctcaaattc |
38157705 |
T |
|
| Q |
115 |
tttaatccagataagttcataggttctaatacaagacagttttgtaggtgcagatacgtgagagaatcattgtcagataagagagtaagggaaaatttgt |
214 |
Q |
| |
|
|| |||||||| |||| | |||| ||| || || || ||||||||||| ||||| |||||||| | | |||| |||||||||||| |||||| |||| |
|
|
| T |
38157706 |
ttcaatccagagaagtcaagaggtgctactaggaggcaattttgtaggtgaagataagtgagagagttagtgtccaataagagagtaaaggaaaacttgt |
38157805 |
T |
|
| Q |
215 |
atggcaaaat---------agaatgagtagtatcatttgtttcagatgagaagagaagttcaatacgtttggcactcttagcaattcctttggagatcaa |
305 |
Q |
| |
|
|| || || | ||||| | | |||||| ||||||||||||||||| | ||||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
38157806 |
atagctctattcgacgcaaaaaatgacttggatcattagtttcagatgagaagagcaattcaatacgtttggcacccttagcaattcctttggtaatcat |
38157905 |
T |
|
| Q |
306 |
tctatcaacgacatccctgtgttcattgcctaatggaaattttactcggattgaactgatcatgtcacctttataatggagcacaaattgatccaatctg |
405 |
Q |
| |
|
||| |||| | ||| ||| || | ||||||||||| ||| |||||||||||| |||||||| |||| | |||| |||| |||||||||||||| |
|
|
| T |
38157906 |
tctgtcaatggaatcattgtatttaggacctaatggaaaacttagtcggattgaactaatcatgtcgccttgaaaatgcagcatgaattgatccaatctt |
38158005 |
T |
|
| Q |
406 |
gtggcaaattcagattgaaagtgaaacctttgaaagaggggaaggctttttggtaagccttgaattgtgttatagtcaaacattgtatggagatcaaagt |
505 |
Q |
| |
|
|||||||||||||| ||||||| ||||| ||| ||||| |||| |||||| |||||| ||| ||| |||||||||| ||||||||||||||| |
|
|
| T |
38158006 |
ttggcaaattcagat------tgaaacccttgaaggagcggaagactttgtggtaactcttgaactgtattagagtcaaacatgttatggagatcaaagt |
38158099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 15 - 509
Target Start/End: Original strand, 38149862 - 38150364
Alignment:
| Q |
15 |
atcaagggtgaagtctacaagatgactgcaattagaacacagactctgaagaagtttctgcttcacatcaactagatgcaacacaaga---gttctcaag |
111 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||| ||| ||| || |||||| || || || ||||||| || ||| |||||||||||| |||||||| |
|
|
| T |
38149862 |
atcaagggtgaagtttacaagatgaatgcaatttgaaaacaaaccctgaagtagattttgattcacattaagtagttgcaacacaagaagagttctcaaa |
38149961 |
T |
|
| Q |
112 |
ttttttaatccagataagttcataggttctaatacaagacagttttgtaggtgcagatacgtgagagaatcattgtcagataagagagtaagggaaaatt |
211 |
Q |
| |
|
|| || ||||| || || | | |||| ||| || || |||||||||| ||||| |||||||||||| |||| ||||||||||||| |||||||| |
|
|
| T |
38149962 |
ttcttgaatcctgagaaatcaaaaggtgctagtaggtagcaactttgtaggtgaagataagtgagagaatcagtgtccgataagagagtaaaggaaaatt |
38150061 |
T |
|
| Q |
212 |
tgtatggcaaaataga------------atgagtagtatcatttgtttcagatgagaagagaagttcaatacgtttggcactcttagcaattcctttgga |
299 |
Q |
| |
|
||||| ||||| || | || | | | |||||| ||||||||||||||||| | ||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
38150062 |
tgtatagcaaactatatggatacaaaaaattaattggatcattagtttcagatgagaagagcaattcaatacgtttggcacccttagtaattcctttgga |
38150161 |
T |
|
| Q |
300 |
gatcaatctatcaacgacatccctgtgttcattgcctaatggaaattttactcggattgaactgatcatgtcacctttataatggagcacaaattgatcc |
399 |
Q |
| |
|
|||| ||| |||| |||| |||||| | ||||||||||| ||||||||||||||||| ||||| ||| ||| |||||| |||| ||||||||| |
|
|
| T |
38150162 |
aatcattctgtcaattgcatct-tgtgtttagaacctaatggaaaatttactcggattgaactaatcatatcatcttgataatgcagcatgaattgatcc |
38150260 |
T |
|
| Q |
400 |
aatctggtggcaaattcagattgaaagtgaaacctttgaaagaggggaaggctttttggtaagccttgaattgtgttatagtcaaacattgtatggagat |
499 |
Q |
| |
|
||||| |||||||||||||| ||||||| ||||| ||| ||||||||||| ||||| |||||| ||| ||| |||||||||| ||||||||| |
|
|
| T |
38150261 |
aatcttttggcaaattcagat------tgaaacccttgaaggagtggaaggcttttcggtaactcttgaactgtattagagtcaaacatgttatggagat |
38150354 |
T |
|
| Q |
500 |
caaagttgag |
509 |
Q |
| |
|
|||| ||||| |
|
|
| T |
38150355 |
caaaattgag |
38150364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 335 - 509
Target Start/End: Original strand, 35083622 - 35083793
Alignment:
| Q |
335 |
ctaatggaaattttactcggattgaactgatcatgtcacctttataatggagcacaaattgatccaatctggtggcaaattcagattgaaagtgaaacct |
434 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| || || |
|
|
| T |
35083622 |
ctaatggaaattttactcggattgaatggatgatggcacctttataatggagcataaattgatccaatcttgtggcaaattcagattgaaagtgtaatct |
35083721 |
T |
|
| Q |
435 |
ttgaaagaggggaaggctttttggtaagccttgaattgtgttatagtcaaacattgtatggagatcaaagttgag |
509 |
Q |
| |
|
|||| | || |||| | ||||||| |||| ||||||||| |||||||||| ||||| |||||||||||||| |
|
|
| T |
35083722 |
ttgatatagtggaaatgtgtttggta---cttggattgtgttagagtcaaacatggtatgaagatcaaagttgag |
35083793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 325 - 506
Target Start/End: Original strand, 45585156 - 45585321
Alignment:
| Q |
325 |
tgttcattgcctaatggaaattttactcggattgaactgatcatgtcacctttataatggagcacaaattgatccaatctggtggcaaattcagattgaa |
424 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||| ||||||| |||||||| | ||||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
45585156 |
tgttcattacctaatggaaattttactcggatggaac-gatcatggcacctttacagtggagcataaattgatccaatcttgtggcaaattcaga----- |
45585249 |
T |
|
| Q |
425 |
agtgaaacctttgaaagaggggaaggctttttggtaagccttgaattgtgttatagtcaaacattgtatggagatcaaagtt |
506 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
45585250 |
----------ttgaaagagtggaaggctttttggtaagtcttgaattgtgttatagtcaaacatggtatggtgatcaaagtt |
45585321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 84 - 426
Target Start/End: Complemental strand, 37883682 - 37883330
Alignment:
| Q |
84 |
aactagatgcaacacaagagttctcaagttttttaatccagataagttcataggttctaatacaagacagttttgtaggtgcagatacgtgagagaatca |
183 |
Q |
| |
|
|||||| | |||||||||||||||||| || || |||||||| || | ||||||| ||| || ||||||||||||||| ||||||||| |||||||| |
|
|
| T |
37883682 |
aactagtttcaacacaagagttctcaaattcttcaatccagaaaattccataggtgctactaggcgacagttttgtaggtacagatacgttagagaatcg |
37883583 |
T |
|
| Q |
184 |
ttgtcagataagagagtaagggaaaatttgtatgg---------caaaatagaatgagtagtatcatttgtttcagatgagaagagaagttcaatacgtt |
274 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| ||||||| ||| ||||||| | || | |||||||||| |||||||||||| |
|
|
| T |
37883582 |
gtgtcagataagagagtaaaggaaaatttgtatggctctagattcaaaataaaat---aagtatcactaattatatatgagaagagtggttcaatacgtt |
37883486 |
T |
|
| Q |
275 |
tggcactcttagcaattcctttgg----agatcaatctatcaacgacatccctgtgttcattgcctaatggaaattttactcggattgaactgatcatgt |
370 |
Q |
| |
|
|| ||| |||||||| |||||||| ||||||| ||||| |||||| ||||||||| ||||||||||| || | ||||||||||||||||||| |
|
|
| T |
37883485 |
tgacacccttagcaactcctttggtaatcaatcaatcaatcaatgacatctttgtgttcatcacctaatggaaaattgagtcggattgaactgatcatgg |
37883386 |
T |
|
| Q |
371 |
cacctttataatggagcacaaattgatccaatctggtggcaaattcagattgaaag |
426 |
Q |
| |
|
||||| || ||| |||| |||||||||||||| ||| ||| ||||||| |||| |
|
|
| T |
37883385 |
taccttgatgatgcagcatgaattgatccaatcttgtgtaaaaatcagattcaaag |
37883330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 20 - 229
Target Start/End: Complemental strand, 43027788 - 43027589
Alignment:
| Q |
20 |
gggtgaagtctacaagatgactgcaattagaacacagactctgaagaagtttctgcttcacatcaactagatgcaacacaagagttctcaagttttttaa |
119 |
Q |
| |
|
|||| |||||||||||||| ||||||| || |||||||||||||| | |||| || |||||| ||||||||||||||||||| ||||||| ||||| || |
|
|
| T |
43027788 |
gggtcaagtctacaagatgtgtgcaattggagcacagactctgaagcaatttccgcgtcacataaactagatgcaacacaagaattctcaaatttttgaa |
43027689 |
T |
|
| Q |
120 |
tccagataagttcataggttctaatacaagacagttttgtaggtgcagatacgtgagagaatcattgtcagataagagagtaagggaaaatttgtatggc |
219 |
Q |
| |
|
||||| |||||||| || || || ||||||||||||||||| || ||||||||| ||||||||| |||||||||| ||||||||||||| |
|
|
| T |
43027688 |
tccag----------aggttctactaggaggcacttttgtaggtgcagatatgtcggagaatcatagtcagataaaagagtaaggggaaatttgtatggc |
43027599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #16
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 236 - 425
Target Start/End: Original strand, 38166734 - 38166923
Alignment:
| Q |
236 |
tatcatttgtttcagatgagaagagaagttcaatacgtttggcactcttagcaattcctttggagatcaatctatcaacgacatccctgtgttcattgcc |
335 |
Q |
| |
|
|||| ||||||||| |||| || ||||||||||||| |||||| | |||||| ||||||| ||| ||||||||| ||| ||| || | ||||| || |
|
|
| T |
38166734 |
tatcgtttgtttcatatgacaatagaagttcaatacttttggctcccttagcgattccttgggaaatcaatctaccaatgaccgatctatattcatcacc |
38166833 |
T |
|
| Q |
336 |
taatggaaattttactcggattgaactgatcatgtcacctttataatggagcacaaattgatccaatctggtggcaaattcagattgaaa |
425 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||| ||| ||| |||||| |||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
38166834 |
taatggaaaatttactcggattgaactaatcatatcatcttgataatgcagcatgaattgatccaatcttttggcaaattcagattgaaa |
38166923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #17
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 252 - 425
Target Start/End: Original strand, 38187985 - 38188158
Alignment:
| Q |
252 |
tgagaagagaagttcaatacgtttggcactcttagcaattcctttggagatcaatctatcaacgacatccctgtgttcattgcctaatggaaattttact |
351 |
Q |
| |
|
||||||||| | ||||||||||| || || |||||||||||||||||| |||| ||| |||| |||| | ||||||| | | |||||||||| |||||| |
|
|
| T |
38187985 |
tgagaagagcaattcaatacgttcggaacccttagcaattcctttggaaatcactctgtcaatgacaacactgtgtttagtatctaatggaaaatttact |
38188084 |
T |
|
| Q |
352 |
cggattgaactgatcatgtcacctttataatggagcacaaattgatccaatctggtggcaaattcagattgaaa |
425 |
Q |
| |
|
|| | ||||| ||| || |||||| |||||| |||| |||||||||||||| ||| |||||||||||||||| |
|
|
| T |
38188085 |
cgaactgaacggatgatagcaccttgataatgtagcatgaattgatccaatcttgtgacaaattcagattgaaa |
38188158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #18
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 13 - 130
Target Start/End: Original strand, 38187745 - 38187862
Alignment:
| Q |
13 |
tcatcaagggtgaagtctacaagatgactgcaattagaacacagactctgaagaagtttctgcttcacatcaactagatgcaacacaagagttctcaagt |
112 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| ||| | |||| ||||| | || || | |||||||||||| |||||||||||||||||||| | |
|
|
| T |
38187745 |
tcatcaagggtgaagtctacaagatgaatgcaatttgaaaatagaccatgaagcaaattttgatgcacatcaactagttgcaacacaagagttctcaaat |
38187844 |
T |
|
| Q |
113 |
tttttaatccagataagt |
130 |
Q |
| |
|
| || |||||||| |||| |
|
|
| T |
38187845 |
tcttgaatccagacaagt |
38187862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #19
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 12 - 130
Target Start/End: Complemental strand, 33862498 - 33862380
Alignment:
| Q |
12 |
atcatcaagggtgaagtctacaagatgactgcaattagaacacagactctgaagaagtttctgcttcacatcaactagatgcaacacaagagttctcaag |
111 |
Q |
| |
|
|||||||||||||||||| ||||| || |||| || ||||||| | ||| ||| ||| ||| ||||||||||||| | || ||||||||||||||||| |
|
|
| T |
33862498 |
atcatcaagggtgaagtcaacaaggtgtttgcactttgaacacaaagtcttaaggagtgtcttcttcacatcaacttgttgtaacacaagagttctcaaa |
33862399 |
T |
|
| Q |
112 |
ttttttaatccagataagt |
130 |
Q |
| |
|
|||||||||| ||| |||| |
|
|
| T |
33862398 |
ttttttaatcgagagaagt |
33862380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #20
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 12 - 130
Target Start/End: Original strand, 34178881 - 34178999
Alignment:
| Q |
12 |
atcatcaagggtgaagtctacaagatgactgcaattagaacacagactctgaagaagtttctgcttcacatcaactagatgcaacacaagagttctcaag |
111 |
Q |
| |
|
|||||||||||||||||| ||||| || |||| || ||||||| | ||| ||| ||| ||| ||||||||||||| | || ||||||||||||||||| |
|
|
| T |
34178881 |
atcatcaagggtgaagtcaacaaggtgtttgcactttgaacacaaagtcttaaggagtgtcttcttcacatcaacttgttgtaacacaagagttctcaaa |
34178980 |
T |
|
| Q |
112 |
ttttttaatccagataagt |
130 |
Q |
| |
|
|||||||||| ||| |||| |
|
|
| T |
34178981 |
ttttttaatcgagagaagt |
34178999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #21
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 249 - 310
Target Start/End: Original strand, 35083521 - 35083582
Alignment:
| Q |
249 |
agatgagaagagaagttcaatacgtttggcactcttagcaattcctttggagatcaatctat |
310 |
Q |
| |
|
|||||| |||||||||||||| |||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
35083521 |
agatgacaagagaagttcaattcgtttgacacccttagcaattcctttggagatcaatctat |
35083582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #22
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 12 - 130
Target Start/End: Original strand, 34180836 - 34180954
Alignment:
| Q |
12 |
atcatcaagggtgaagtctacaagatgactgcaattagaacacagactctgaagaagtttctgcttcacatcaactagatgcaacacaagagttctcaag |
111 |
Q |
| |
|
|||||||||||||||||| ||||| || ||||||| ||||||| | |||||| |||| | | ||||||| |||| | || ||||||||||||||||| |
|
|
| T |
34180836 |
atcatcaagggtgaagtcaacaaggtgtttgcaatttgaacacaaagtctgaacaagtgtattcttcacaataacttgttgtaacacaagagttctcaaa |
34180935 |
T |
|
| Q |
112 |
ttttttaatccagataagt |
130 |
Q |
| |
|
|||||||||| ||| |||| |
|
|
| T |
34180936 |
ttttttaatcgagagaagt |
34180954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #23
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 14 - 205
Target Start/End: Original strand, 35083301 - 35083495
Alignment:
| Q |
14 |
catcaagggtgaagtctacaagatgactgcaattagaacacagactctgaagaagtttctgcttcacatcaactagatgcaacacaagagttctcaagtt |
113 |
Q |
| |
|
|||||||||| |||||||||||||| | ||| | || |||| |||||||| |||||| || ||||| || ||||| ||||||||||||| |||| || |
|
|
| T |
35083301 |
catcaagggtcaagtctacaagatgggtccaaatggagcacatactctgaaccagtttcggcgtcacagaaattagatccaacacaagagttgtcaaatt |
35083400 |
T |
|
| Q |
114 |
ttttaatccag---ataagttcataggttctaatacaagacagttttgtaggtgcagatacgtgagagaatcattgtcagataagagagtaaggg |
205 |
Q |
| |
|
|| ||||||| | ||| | ||||||| || || |||| ||| ||||||||||| |||||||||| |||| |||||||||||||||||| |
|
|
| T |
35083401 |
attgaatccagtgcagtagtcaagaggttctgcaacgaggcagtcttgcaggtgcagatatgtgagagaatgattgccagataagagagtaaggg |
35083495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #24
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 251 - 375
Target Start/End: Original strand, 38173315 - 38173439
Alignment:
| Q |
251 |
atgagaagagaagttcaatacgtttggcactcttagcaattcctttggagatcaatctatcaacgacatccctgtgttcattgcctaatggaaattttac |
350 |
Q |
| |
|
|||||||||| ||||||||||||| ||| |||||||||||||||| | |||| | | |||| |||||| || |||| ||| ||||||||||| | || |
|
|
| T |
38173315 |
atgagaagagcagttcaatacgttccacacccttagcaattcctttgaaaatcattttgtcaatgacatcactatgttgattacctaatggaaaatccac |
38173414 |
T |
|
| Q |
351 |
tcggattgaactgatcatgtcacct |
375 |
Q |
| |
|
||| | ||||| ||||||||||||| |
|
|
| T |
38173415 |
tcgaagtgaacggatcatgtcacct |
38173439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #25
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 12 - 138
Target Start/End: Original strand, 38173079 - 38173205
Alignment:
| Q |
12 |
atcatcaagggtgaagtctacaagatgactgcaattagaacacagactctgaagaagtttctgcttcacatcaactagatgcaacacaagagttctcaag |
111 |
Q |
| |
|
||||| |||||||||||||||||||||| |||| | || ||| || |||||| | | |||||| ||| |||| ||||||||||||||||||||||| |
|
|
| T |
38173079 |
atcattaagggtgaagtctacaagatgaatgcagctggacaacataccctgaagcaaatcctgctttacaacaacaagatgcaacacaagagttctcaaa |
38173178 |
T |
|
| Q |
112 |
ttttttaatccagataagttcataggt |
138 |
Q |
| |
|
|| || || |||||||| || |||||| |
|
|
| T |
38173179 |
ttattgaaaccagataaatttataggt |
38173205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #26
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 454 - 505
Target Start/End: Complemental strand, 43027195 - 43027144
Alignment:
| Q |
454 |
tttggtaagccttgaattgtgttatagtcaaacattgtatggagatcaaagt |
505 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
43027195 |
tttggtaggtcttgaattgtgttatagtcaaacatggtatgaagatcaaagt |
43027144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #27
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 264 - 421
Target Start/End: Original strand, 38286391 - 38286548
Alignment:
| Q |
264 |
ttcaatacgtttggcactcttagcaattcctttggagatcaatctatcaacgacatccctgtgttcattgcctaatggaaattttactcggattgaactg |
363 |
Q |
| |
|
||||| ||||||| | | |||||||||| ||||||| |||| || || | |||| | |||||| | | ||||||||||| || ||||||||| | | |
|
|
| T |
38286391 |
ttcaagacgtttgactcccttagcaattactttggaaatcatcctttcgatgacaccagtgtgtttagtacctaatggaaacactagtcggattgaccgg |
38286490 |
T |
|
| Q |
364 |
atcatgtcacctttataatggagcacaaattgatccaatctggtggcaaattcagatt |
421 |
Q |
| |
|
||||||||||||| |||||| |||| |||||||||| ||| | || ||||||||||| |
|
|
| T |
38286491 |
atcatgtcaccttgataatgcagcatgaattgatccactcttgcggtaaattcagatt |
38286548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 175 - 219
Target Start/End: Original strand, 38166667 - 38166711
Alignment:
| Q |
175 |
agagaatcattgtcagataagagagtaagggaaaatttgtatggc |
219 |
Q |
| |
|
||||||||| ||| |||||||||||| | |||||||||||||||| |
|
|
| T |
38166667 |
agagaatcagtgtgagataagagagtcatggaaaatttgtatggc |
38166711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0176 (Bit Score: 213; Significance: 1e-116; HSPs: 1)
Name: scaffold0176
Description:
Target: scaffold0176; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 14 - 506
Target Start/End: Original strand, 23480 - 23972
Alignment:
| Q |
14 |
catcaagggtgaagtctacaagatgactgcaattagaacacagactctgaagaagtttctgcttcacatcaactagatgcaacacaagagttctcaagtt |
113 |
Q |
| |
|
|||||||||||| ||| ||||| || ||||||| ||||||| | ||| ||| ||| ||| ||||||| |||| | |||||||||||||||||||| || |
|
|
| T |
23480 |
catcaagggtgaggtcaacaaggtggttgcaatttgaacacaaagtcttaaggagtgtcttcttcacaaaaacttgttgcaacacaagagttctcaaatt |
23579 |
T |
|
| Q |
114 |
ttttaatccagataagttcataggttctaatacaagacagttttgtaggtgcagatacgtgagagaatcattgtcagataagagagtaagggaaaatttg |
213 |
Q |
| |
|
|||||||||||| |||| | |||| || || |||||||||||||||| ||| || | ||||||||| ||| ||||||| ||||||||||| || |
|
|
| T |
23580 |
ttttaatccagagaagtatctgggtttgtctatgaggcagttttgtaggtgcaaataggtcacagaatcattctcaagtaagagaataagggaaaatctg |
23679 |
T |
|
| Q |
214 |
tatggcaaaatagaatgagtagtatcatttgtttcagatgagaagagaagttcaatacgtttggcactcttagcaattcctttggagatcaatctatcaa |
313 |
Q |
| |
|
||||||| ||||||| |||||||||| |||||| ||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
23680 |
tatggcataatagaaatagtagtatcagttgtttaagaagagaagagaagttcaatatgtttggcacccttagcaattcctttggagatcaatctatcaa |
23779 |
T |
|
| Q |
314 |
cgacatccctgtgttcattgcctaatggaaattttactcggattgaactgatcatgtcacctttataatggagcacaaattgatccaatctggtggcaaa |
413 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||||||| || |||| ||| ||| |||||||||||||||||| |||||||||||| || |||||||| |
|
|
| T |
23780 |
tgacatccctatgttcattacctaatggaaattttactcgaatggaacggataatgacacctttataatggagcataaattgatccaaacttgtggcaaa |
23879 |
T |
|
| Q |
414 |
ttcagattgaaagtgaaacctttgaaagaggggaaggctttttggtaagccttgaattgtgttatagtcaaacattgtatggagatcaaagtt |
506 |
Q |
| |
|
|| ||||||| |||||||||||||| |||| |||| | ||| ||||||| ||||| |||||||||||||||||| |||| |||||| ||||| |
|
|
| T |
23880 |
tttagattgatagtgaaacctttgagagagaggaacgatttgtggtaagtcttgatctgtgttatagtcaaacatggtatagagatcgaagtt |
23972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 193; Significance: 1e-104; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 14 - 506
Target Start/End: Complemental strand, 26003014 - 26002522
Alignment:
| Q |
14 |
catcaagggtgaagtctacaagatgactgcaattagaacacagactctgaagaagtttctgcttcacatcaactagatgcaacacaagagttctcaagtt |
113 |
Q |
| |
|
|||||||||||| ||| ||||| || ||||||| ||||||| | ||| ||| ||| ||| ||||||| |||| | |||||||||||||||||||| || |
|
|
| T |
26003014 |
catcaagggtgaggtcaacaaggtggttgcaatttgaacacaaagtcttaaggagtgtcttcttcacaaaaacttgttgcaacacaagagttctcaaatt |
26002915 |
T |
|
| Q |
114 |
ttttaatccagataagttcataggttctaatacaagacagttttgtaggtgcagatacgtgagagaatcattgtcagataagagagtaagggaaaatttg |
213 |
Q |
| |
|
|||||||||||| |||| | ||| || || |||||||||||||||| ||| || | ||||||||| ||| ||||||| ||||||||||| || |
|
|
| T |
26002914 |
ttttaatccagagaagtatctgcgtttgtctatgaggcagttttgtaggtgcaaataggtcacagaatcattctcaagtaagagaataagggaaaatctg |
26002815 |
T |
|
| Q |
214 |
tatggcaaaatagaatgagtagtatcatttgtttcagatgagaagagaagttcaatacgtttggcactcttagcaattcctttggagatcaatctatcaa |
313 |
Q |
| |
|
||||||| ||||||| |||||||| | |||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
26002814 |
tatggcataatagaaatagtagtattagttgtttcagaagagaagagaagttcaatatgtttggcaccattagcaattcctttggagatcaatctatcaa |
26002715 |
T |
|
| Q |
314 |
cgacatccctgtgttcattgcctaatggaaattttactcggattgaactgatcatgtcacctttataatggagcacaaattgatccaatctggtggcaaa |
413 |
Q |
| |
|
||||||||| |||||||| | |||||||||||||||||| || |||| ||| ||| |||||||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
26002714 |
tgacatccctatgttcattacataatggaaattttactcgaatggaacggatgatggcacctttataatggagcataaattgatccaatcttgtggcaaa |
26002615 |
T |
|
| Q |
414 |
ttcagattgaaagtgaaacctttgaaagaggggaaggctttttggtaagccttgaattgtgttatagtcaaacattgtatggagatcaaagtt |
506 |
Q |
| |
|
||||||||||||||||||| ||||| |||| ||| || ||| || ||| ||||| |||||||||||| |||| |||| |||||| ||||| |
|
|
| T |
26002614 |
ttcagattgaaagtgaaacatttgagagagaggacggatttgtgacaagtcttgatctgtgttatagtcggacatggtatagagatcgaagtt |
26002522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 14 - 506
Target Start/End: Complemental strand, 25563531 - 25563037
Alignment:
| Q |
14 |
catcaagggtgaagtctacaagatgactgcaattagaacacagactctgaagaagtttctgcttcacatcaactagatgcaacacaagagttctcaagtt |
113 |
Q |
| |
|
|||||||||||| ||| ||||| || ||||||| ||||||| | ||| ||| ||| ||| ||||||| |||| | |||||||||||||||||||| || |
|
|
| T |
25563531 |
catcaagggtgaggtcaacaaggtggttgcaatttgaacacaaagtcttaaggagtgtcttcttcacaaaaacttgttgcaacacaagagttctcaaatt |
25563432 |
T |
|
| Q |
114 |
ttttaatccagataagttcataggttctaatacaagacagttttgtaggtgcagatacgtgagagaatcattgtcagataagagagtaagggaaaatttg |
213 |
Q |
| |
|
|||||||||||| |||| | |||| || || |||||||||||||||| ||| || | ||||||||| ||| ||||||| ||||||||||| || |
|
|
| T |
25563431 |
ttttaatccagagaagtatctgggtttgtctatgaggcagttttgtaggtgcaaataggtcacagaatcattctcaagtaagagaataagggaaaatctg |
25563332 |
T |
|
| Q |
214 |
tatggcaaaatagaatgagtagtatcatttgtttcagatgagaagagaagttcaatacgtttggcactcttagcaattcctttggagatcaatctatcaa |
313 |
Q |
| |
|
||||||| ||||||| |||||||||| |||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| || |
|
|
| T |
25563331 |
tatggcataatagaaatagtagtatcagttgtttcagaagagaagagaagttcaatatgtttggcacccttagcaattcctttggagatcaatctatgaa |
25563232 |
T |
|
| Q |
314 |
cgacatccctgtgttcattgcctaatggaaattttactcggattgaactgatcatgtcacctttataatggagcacaaattgatccaatctggtggcaaa |
413 |
Q |
| |
|
||||||||| |||| ||| | |||||||||||||||||| || |||| ||| ||| ||||||||||||| |||| ||||||||||||||| |||| ||| |
|
|
| T |
25563231 |
tgacatccctatgttgattacataatggaaattttactcgaatggaacggatgatggcacctttataatgcagcataaattgatccaatcttgtggaaaa |
25563132 |
T |
|
| Q |
414 |
ttcagattgaaagtgaaaccttt--gaaagaggggaaggctttttggtaagccttgaattgtgttatagtcaaacattgtatggagatcaaagtt |
506 |
Q |
| |
|
||||||||||||||||||||||| || |||| |||||| ||| || ||| ||||| |||||||||||| |||| |||| |||||| ||||| |
|
|
| T |
25563131 |
ttcagattgaaagtgaaacctttgagagagagaggaaggatttgtgacaagtcttgatctgtgttatagtcggacatggtatagagatcgaagtt |
25563037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 151 - 506
Target Start/End: Complemental strand, 25569009 - 25568654
Alignment:
| Q |
151 |
cagttttgtaggtgcagatacgtgagagaatcattgtcagataagagagtaagggaaaatttgtatggcaaaatagaatgagtagtatcatttgtttcag |
250 |
Q |
| |
|
|||||||||||||||| ||| || | ||||||||| ||| ||||||| ||||||||||| ||||||||| ||||||| |||||||||| ||||||||| |
|
|
| T |
25569009 |
cagttttgtaggtgcaaataggtcacagaatcattctcaagtaagagaataagggaaaatctgtatggcataatagaaatagtagtatcagttgtttcag |
25568910 |
T |
|
| Q |
251 |
atgagaagagaagttcaatacgtttggcactcttagcaattcctttggagatcaatctatcaacgacatccctgtgttcattgcctaatggaaattttac |
350 |
Q |
| |
|
| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| || ||||||||| |||||||| | ||||||||||||||| |
|
|
| T |
25568909 |
aagagaagagaagttcaatatgtttggcacccttagcaattcctttggagatcaatctatgaatgacatccctatgttcattacataatggaaattttac |
25568810 |
T |
|
| Q |
351 |
tcggattgaactgatcatgtcacctttataatggagcacaaattgatccaatctggtggcaaattcagattgaaagtgaaacctttgaaagaggggaagg |
450 |
Q |
| |
|
||| || |||| ||| ||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
25568809 |
tcgaatggaacggatgatggcacctttataatggagcataaattgatccaatcttgtggcaaattcagattgaaagtgaaacctttgagagagaggaagg |
25568710 |
T |
|
| Q |
451 |
ctttttggtaagccttgaattgtgttatagtcaaacattgtatggagatcaaagtt |
506 |
Q |
| |
|
||| || ||| ||||| |||||||||||| |||| |||| |||||| ||||| |
|
|
| T |
25568709 |
atttgtgacaagtcttgatctgtgttatagtcggacatggtatagagatcgaagtt |
25568654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 14 - 506
Target Start/End: Complemental strand, 26103043 - 26102549
Alignment:
| Q |
14 |
catcaagggtgaagtctacaagatgactgcaattagaacacagactctgaagaagtttctgcttcacatcaactagatgcaacacaagagttctcaagtt |
113 |
Q |
| |
|
|||||||||||| ||| ||||| || ||||||| ||||||| | ||| ||| ||| ||| ||||||| |||| | |||||||||||||||||||| || |
|
|
| T |
26103043 |
catcaagggtgaggtcaacaaggtggttgcaatttgaacacaaagtcttaaggagtgtcttcttcacaaaaacttgttgcaacacaagagttctcaaatt |
26102944 |
T |
|
| Q |
114 |
ttttaatccagataagttcataggttctaatacaagacagttttgtaggtgcagatacgtgagagaatcattgtcagataagagagtaagggaaaatttg |
213 |
Q |
| |
|
|||||||||||| |||| | |||| || || |||||||||||||||| ||| || | ||||||||| ||| ||||||| ||||||||||| || |
|
|
| T |
26102943 |
ttttaatccagagaagtatctgggtttgtctatgaggcagttttgtaggtgcaaataggtcacagaatcattctcaagtaagagaataagggaaaatctg |
26102844 |
T |
|
| Q |
214 |
tatggcaaaatagaatgagtagtatcatttgtttcagatgagaagagaagttcaatacgtttggcactcttagcaattcctttggagatcaatctatcaa |
313 |
Q |
| |
|
||||||| ||||||| |||||||||| |||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| || |
|
|
| T |
26102843 |
tatggcataatagaaatagtagtatcagttgtttcagaagagaagagaagttcaatatgtttggcacccttagcaattcctttggagatcaatctatgaa |
26102744 |
T |
|
| Q |
314 |
cgacatccctgtgttcattgcctaatggaaattttactcggattgaactgatcatgtcacctttataatggagcacaaattgatccaatctggtggcaaa |
413 |
Q |
| |
|
||||||||| |||| ||| | |||||||||||||||||| || |||| ||| ||| ||||||||||||| |||| ||||||||||||||| |||| ||| |
|
|
| T |
26102743 |
tgacatccctatgttgattacataatggaaattttactcgaatggaacggatgatggcacctttataatgcagcataaattgatccaatcttgtggaaaa |
26102644 |
T |
|
| Q |
414 |
ttcagattgaaagtgaaaccttt--gaaagaggggaaggctttttggtaagccttgaattgtgttatagtcaaacattgtatggagatcaaagtt |
506 |
Q |
| |
|
||||||||||||||||||||||| || |||| |||||| ||| || ||| ||||| |||||||||||| |||| |||| |||||| ||||| |
|
|
| T |
26102643 |
ttcagattgaaagtgaaacctttgagagagagaggaaggatttgtgacaagtcttgatctgtgttatagtcggacatggtatagagatcgaagtt |
26102549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 77 - 422
Target Start/End: Original strand, 4164161 - 4164515
Alignment:
| Q |
77 |
tcacatcaactagatgcaacacaagagttctcaagttttttaatccagataagttcataggttctaatacaagacagttttgtaggtgcagatacgtgag |
176 |
Q |
| |
|
||||||||| || ||||||||||||||||||||| || || |||||||| |||| ||| ||| ||| || || || || | ||||||||||| ||||| |
|
|
| T |
4164161 |
tcacatcaattatatgcaacacaagagttctcaaattcttgaatccagagaagtccattggtgctactaggaggcatttctctaggtgcagatgtgtgag |
4164260 |
T |
|
| Q |
177 |
agaatcattgtcagataagagagtaagggaaaatttgtatggc---------aaaatagaatgagtagtatcatttgtttcagatgagaagagaagttca |
267 |
Q |
| |
|
||| | |||||||||||||||||| || ||||||||||||| |||||| ||| |||||||| ||| ||||| ||||| || |||||| |
|
|
| T |
4164261 |
agagtatgtgtcagataagagagtaaagggaaatttgtatggctccccttcaaaaataaaatcagtagtataattagtttcgttcgagaatagcagttca |
4164360 |
T |
|
| Q |
268 |
atacgtttggcactcttagcaattcctttggagatcaatctatcaacgacatccctgtgttcattgcctaatggaaattttactcggattgaactgatca |
367 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |||||| | |||| ||||||||| |||| | ||||||||||| ||||||||||||||| ||||| |
|
|
| T |
4164361 |
atacgtttggcacccttagcaattcctttggaaatcaatttgtcaatgacatccctatgttggtcacctaatggaaaatttactcggattgaatggatca |
4164460 |
T |
|
| Q |
368 |
tgtcacctttataatggagcacaaattgatccaatctggtggcaaattcagattg |
422 |
Q |
| |
|
|| |||||| ||||| | || |||||||||||| | |||||||||| |||||| |
|
|
| T |
4164461 |
tggcaccttggtaatgcatcatgaattgatccaatattgtggcaaattgagattg |
4164515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 77 - 422
Target Start/End: Original strand, 4225782 - 4226136
Alignment:
| Q |
77 |
tcacatcaactagatgcaacacaagagttctcaagttttttaatccagataagttcataggttctaatacaagacagttttgtaggtgcagatacgtgag |
176 |
Q |
| |
|
||||||||| || ||||||||||||||||||||| || || |||||||| |||| ||| ||| ||| || || || || | ||||||||||| ||||| |
|
|
| T |
4225782 |
tcacatcaattatatgcaacacaagagttctcaaattcttgaatccagagaagtccattggtgctactaggaggcatttctctaggtgcagatgtgtgag |
4225881 |
T |
|
| Q |
177 |
agaatcattgtcagataagagagtaagggaaaatttgtatggc---------aaaatagaatgagtagtatcatttgtttcagatgagaagagaagttca |
267 |
Q |
| |
|
||| | |||||||||||||||||| || ||||||||||||| |||||| ||| |||||||| ||| ||||| ||||| || |||||| |
|
|
| T |
4225882 |
agagtatgtgtcagataagagagtaaagggaaatttgtatggctccccttcaaaaataaaatcagtagtataattagtttcgttcgagaatagcagttca |
4225981 |
T |
|
| Q |
268 |
atacgtttggcactcttagcaattcctttggagatcaatctatcaacgacatccctgtgttcattgcctaatggaaattttactcggattgaactgatca |
367 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |||||| | |||| ||||||||| |||| | ||||||||||| ||||||||||||||| ||||| |
|
|
| T |
4225982 |
atacgtttggcacccttagcaattcctttggaaatcaatttgtcaatgacatccctatgttggtcacctaatggaaaatttactcggattgaatggatca |
4226081 |
T |
|
| Q |
368 |
tgtcacctttataatggagcacaaattgatccaatctggtggcaaattcagattg |
422 |
Q |
| |
|
|| |||||| ||||| | || |||||||||||| | |||||||||| |||||| |
|
|
| T |
4226082 |
tggcaccttggtaatgcatcatgaattgatccaatattgtggcaaattgagattg |
4226136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 89; Significance: 1e-42; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 335 - 509
Target Start/End: Complemental strand, 9663628 - 9663457
Alignment:
| Q |
335 |
ctaatggaaattttactcggattgaactgatcatgtcacctttataatggagcacaaattgatccaatctggtggcaaattcagattgaaagtgaaacct |
434 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||| |||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||| || || |
|
|
| T |
9663628 |
ctaatggaaattttactcggattgaatggatgatggcacctttataatggagcataaattgatccaatcttgtgacaaattcagattgaaagtgtaatct |
9663529 |
T |
|
| Q |
435 |
ttgaaagaggggaaggctttttggtaagccttgaattgtgttatagtcaaacattgtatggagatcaaagttgag |
509 |
Q |
| |
|
||||||||| |||| | ||||||| |||| || ||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
9663528 |
ttgaaagagtggaaatgtgtttggta---cttggatagtgttatagtcaaacatggtatgaagatcaaagttgag |
9663457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 12 - 201
Target Start/End: Complemental strand, 9663914 - 9663722
Alignment:
| Q |
12 |
atcatcaagggtgaagtctacaagatgactgcaattagaacacagactctgaagaagtttctgcttcacatcaactagatgcaacacaagagttctcaag |
111 |
Q |
| |
|
||||||||||| |||||||||||||| ||||| | || ||||||||||||| |||||| || | ||| || ||||||||||||||||||| | || |
|
|
| T |
9663914 |
atcatcaagggccaagtctacaagatgggtgcaaatggagcacagactctgaaccagtttcggcgtgacaaaaattagatgcaacacaagagttgttaaa |
9663815 |
T |
|
| Q |
112 |
ttttttaatccagataagt--tcat-aggttctaatacaagacagttttgtaggtgcagatacgtgagagaatcattgtcagataagagagta |
201 |
Q |
| |
|
|| || |||||||| ||| ||| ||||||| | || ||| ||||||||||||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
9663814 |
ttattgaatccagagtagtagtcaagaggttctccaatgaggcagctttgtaggtgcagatacgtgagagaatgattggcagataagagagta |
9663722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 5e-20; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 242 - 424
Target Start/End: Original strand, 12409841 - 12410023
Alignment:
| Q |
242 |
ttgtttcagatgagaagagaagttcaatacgtttggcactcttagcaattcctttggagatcaatctatcaacgacatccctgtgttcattgcctaatgg |
341 |
Q |
| |
|
|||||| | |||||||||| ||||||||||||||| ||| ||| |||||||||||||| |||| ||| |||| ||| || |||||||||| ||||| |
|
|
| T |
12409841 |
ttgtttgatatgagaagagcagttcaatacgtttgacacccttggcaattcctttggaaatcattctgtcaatgacgtcactgtgttcatgacctaacaa |
12409940 |
T |
|
| Q |
342 |
aaattttactcggattgaactgatcatgtcacctttataatggagcacaaattgatccaatctggtggcaaattcagattgaa |
424 |
Q |
| |
|
|| || | |||||||||| ||| ||| ||||| |||||| |||| | |||||||||||| |||||||||| |||||||| |
|
|
| T |
12409941 |
gaaattgagtcggattgaaaggatgatggaaccttgataatgcagcatgacttgatccaatctagtggcaaattgagattgaa |
12410023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 242 - 424
Target Start/End: Original strand, 12421901 - 12422083
Alignment:
| Q |
242 |
ttgtttcagatgagaagagaagttcaatacgtttggcactcttagcaattcctttggagatcaatctatcaacgacatccctgtgttcattgcctaatgg |
341 |
Q |
| |
|
|||||| | |||||||||| ||||||||||||||| ||| ||| |||||||||||||| |||| ||| |||| ||| || |||||||||| ||||| |
|
|
| T |
12421901 |
ttgtttgatatgagaagagcagttcaatacgtttgacacccttggcaattcctttggaaatcattctgtcaatgacgtcactgtgttcatgacctaacaa |
12422000 |
T |
|
| Q |
342 |
aaattttactcggattgaactgatcatgtcacctttataatggagcacaaattgatccaatctggtggcaaattcagattgaa |
424 |
Q |
| |
|
|| || | |||||||||| ||| ||| ||||| |||||| |||| | |||||||||||| |||||||||| |||||||| |
|
|
| T |
12422001 |
gaaattgagtcggattgaaaggatgatggaaccttgataatgcagcatgacttgatccaatctagtggcaaattgagattgaa |
12422083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 83 - 170
Target Start/End: Original strand, 29196146 - 29196233
Alignment:
| Q |
83 |
caactagatgcaacacaagagttctcaagttttttaatccagataagttcataggttctaatacaagacagttttgtaggtgcagata |
170 |
Q |
| |
|
||||||||||||||||||||||| |||| ||| ||| || ||| |||| ||||||| | ||| |||||||||||| ||||| ||||| |
|
|
| T |
29196146 |
caactagatgcaacacaagagttgtcaattttcttagtctagaaaagtccataggtggtgatagaagacagttttgcaggtgtagata |
29196233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 72 - 110
Target Start/End: Original strand, 12409650 - 12409688
Alignment:
| Q |
72 |
ctgcttcacatcaactagatgcaacacaagagttctcaa |
110 |
Q |
| |
|
|||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
12409650 |
ctgcttcacatcgactagacgcaacacaagagttctcaa |
12409688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 72 - 110
Target Start/End: Original strand, 12421710 - 12421748
Alignment:
| Q |
72 |
ctgcttcacatcaactagatgcaacacaagagttctcaa |
110 |
Q |
| |
|
|||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
12421710 |
ctgcttcacatcgactagacgcaacacaagagttctcaa |
12421748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 264 - 421
Target Start/End: Original strand, 2223791 - 2223948
Alignment:
| Q |
264 |
ttcaatacgtttggcactcttagcaattcctttggagatcaatctatcaacgacatccctgtgttcattgcctaatggaaattttactcggattgaactg |
363 |
Q |
| |
|
||||| ||||||| ||| |||||||||||||||||| |||| || |||| |||| | |||||| | ||||||||||| | |||||||||| | |
|
|
| T |
2223791 |
ttcaagacgtttgacacccttagcaattcctttggaaatcatcctttcaatgacacctgtgtgtttggtacctaatggaaacacgagtcggattgaatgg |
2223890 |
T |
|
| Q |
364 |
atcatgtcacctttataatggagcacaaattgatccaatctggtggcaaattcagatt |
421 |
Q |
| |
|
||||||||||||| |||||| |||| |||||||||| ||| | |||||||||||||| |
|
|
| T |
2223891 |
atcatgtcaccttgataatgcagcatgaattgatccactcttgcggcaaattcagatt |
2223948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University