View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20757_low_2 (Length: 394)

Name: NF20757_low_2
Description: NF20757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20757_low_2
NF20757_low_2
[»] chr7 (33 HSPs)
chr7 (1-394)||(36744842-36745258)
chr7 (45-394)||(42796507-42796864)
chr7 (45-315)||(33860156-33860434)
chr7 (45-315)||(34146086-34146364)
chr7 (45-315)||(34181071-34181349)
chr7 (1-146)||(45585158-45585302)
chr7 (1-230)||(43027162-43027400)
chr7 (44-138)||(35083622-35083716)
chr7 (48-387)||(38157669-38158025)
chr7 (48-221)||(38166742-38166923)
chr7 (48-221)||(38150106-38150286)
chr7 (151-369)||(37883446-37883670)
chr7 (234-388)||(43027587-43027731)
chr7 (234-388)||(35073288-35073442)
chr7 (48-221)||(38187977-38188158)
chr7 (1-138)||(35084594-35084746)
chr7 (45-138)||(35073543-35073636)
chr7 (247-388)||(35099625-35099766)
chr7 (45-138)||(35099895-35099988)
chr7 (150-214)||(35083523-35083587)
chr7 (150-214)||(35084495-35084559)
chr7 (150-214)||(35099796-35099860)
chr7 (281-393)||(38173139-38173251)
chr7 (247-388)||(35084324-35084465)
chr7 (150-214)||(35073444-35073508)
chr7 (169-220)||(38173309-38173360)
chr7 (52-111)||(38286489-38286548)
chr7 (34-139)||(37883317-37883422)
chr7 (322-387)||(38187810-38187875)
chr7 (1-34)||(42796448-42796481)
chr7 (1-45)||(35073651-35073695)
chr7 (1-45)||(35100003-35100047)
chr7 (243-366)||(38149949-38150072)
[»] chr6 (6 HSPs)
chr6 (1-388)||(4164161-4164565)
chr6 (1-388)||(4225782-4226186)
chr6 (45-315)||(25568732-25569010)
chr6 (45-315)||(26002600-26002878)
chr6 (45-315)||(25563117-25563395)
chr6 (45-315)||(26102629-26102907)
[»] scaffold0176 (1 HSPs)
scaffold0176 (45-315)||(23616-23894)
[»] chr5 (1 HSPs)
chr5 (44-138)||(9663534-9663628)
[»] chr2 (4 HSPs)
chr2 (149-221)||(12409843-12409915)
chr2 (149-221)||(12421903-12421975)
chr2 (49-130)||(12409942-12410023)
chr2 (49-130)||(12422002-12422083)
[»] chr3 (2 HSPs)
chr3 (52-122)||(2223878-2223948)
chr3 (169-216)||(2223776-2223823)


Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 394
Target Start/End: Complemental strand, 36745258 - 36744842
Alignment:
Q  1 tgtttgactataacacaattcaagacttaccaaaaagccttccac---------------actttcaatctgaatttgccaaaagattggatcaatttat 85  Q
    |||||||||||||||||||||||||||||||||||||||||||||               |||||||||||||||||||||  ||||||||||||||| |    
T  36745258 tgtttgactataacacaattcaagacttaccaaaaagccttccactctttcaaaggtttcactttcaatctgaatttgccaccagattggatcaatttgt 36745159  T
Q  86 gctccattatcaaggtgacatgatccattcattccgagtaaatttttcattaggcaatgaa--------tctcattgatagattgatctctaaaggaatt 177  Q
    |||||||||| ||||||||||||||  |||| |||||||||| ||| ||||||||||||||        |  |||||||||||||||||| |||||||||    
T  36745158 gctccattataaaggtgacatgatcagttcaatccgagtaaaatttccattaggcaatgaacacagggatgccattgatagattgatctccaaaggaatt 36745059  T
Q  178 gctaagggtgtcaaacgtattgaactgctcttctcatatgaaaccagtgatactaatgattttattttgccatacaaatttccccttactctcttatgtg 277  Q
    |||||||||| ||||||||||||||| |||||||||| |||||| | |||||||| | ||| ||||||||||||||||||| ||||||||||||||| ||    
T  36745058 gctaagggtgccaaacgtattgaacttctcttctcatctgaaacaaatgatactactcattctattttgccatacaaattttcccttactctcttatctg 36744959  T
Q  278 acaatgattctttgtcatatctgcacctacaaaactgcttcctagtagcacctatgaacttatctggattcaataacttgagaactcttgtgctgcatct 377  Q
    ||||||||||| |  | ||||||||||||||||||||  |  || ||| ||||||||||||||||||||| || |||||||||||||||||| | |||||    
T  36744958 acaatgattctctcacgtatctgcacctacaaaactgtcttgtattagaacctatgaacttatctggattaaaaaacttgagaactcttgtgttccatct 36744859  T
Q  378 agttgatgtgaagcaga 394  Q
    |||||||||||||||||    
T  36744858 agttgatgtgaagcaga 36744842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 45 - 394
Target Start/End: Original strand, 42796507 - 42796864
Alignment:
Q  45 cactttcaatctgaatttgccaaaagattggatcaatttatgctccattatcaaggtgacatgatccattcattccgagtaaatttttcattaggcaatg 144  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||  || |||| |||| |||||||||||||| ||||||||||||    
T  42796507 cactttcaatctcaatttgccacaagattggatcaatttatgctccattataaaggtgctatcatccgttcaatccgagtaaattttccattaggcaatg 42796606  T
Q  145 aatct--------cattgatagattgatctctaaaggaattgctaagggtgtcaaacgtattgaactgctcttctcatatgaaaccagtgatactaatga 236  Q
    ||  |        |||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||| |||| |||||| | |||||||| |||    
T  42796607 aacatagggatgccattgatagattgatctccaaaggaattgctaagggtgtcaaacatattgaacttctcttgtcatctgaaacaaatgatactattga 42796706  T
Q  237 ttttattttgccatacaaatttccccttactctcttatgtgacaatgattctttgtcatatctgcacctacaaaactgcttcctagtagcacctatgaac 336  Q
    || ||||  ||||||||||||||||||||||||||||| ||||  ||||||| || | ||| ||||||| ||||||||||||||| ||| |||| || ||    
T  42796707 ttctattccgccatacaaatttccccttactctcttatctgactttgattctctgacgtatatgcacctgcaaaactgcttcctactagaacctttggac 42796806  T
Q  337 ttatctggattcaataacttgagaactcttgtgctgcatctagttgatgtgaagcaga 394  Q
    || ||||||||||| || ||||||||||||||| ||||||||||||||||||| ||||    
T  42796807 ttctctggattcaaaaatttgagaactcttgtgttgcatctagttgatgtgaatcaga 42796864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 45 - 315
Target Start/End: Original strand, 33860156 - 33860434
Alignment:
Q  45 cactttcaatctgaatttgccaaaagattggatcaatttatgctccattatcaaggtgacatgatccattcattccgagtaaatttttcattaggcaatg 144  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |||||||| |||  | |||||||| ||| ||||| | ||||    
T  33860156 cactttcaatctgaatttgccacaagattggatcaatttatgctccattataaaggtgccatgatccgttccattcgagtaaaatttccattatgtaatg 33860255  T
Q  145 aa--------tctcattgatagattgatctctaaaggaattgctaagggtgtcaaacgtattgaactgctcttctcatatgaaaccagtgatactaatga 236  Q
    ||        | ||||||||||||||||||| ||||||||||||||||||| | ||| |||| |||| |||||||| | |||||| | |||||||| |      
T  33860256 aacatagggatgtcattgatagattgatctccaaaggaattgctaagggtgccgaacatattcaacttctcttctcttctgaaacaactgatactactat 33860355  T
Q  237 ttttattttgccatacaaatttccccttactctcttatgtgacaatgattctttgtcatatctgcacctacaaaactgc 315  Q
    || ||||||||||||||||||| |||||| |||||||  | | ||||||||| || | ||| |||||||||||||||||    
T  33860356 ttctattttgccatacaaattttcccttattctcttacctcagaatgattctgtgacctatttgcacctacaaaactgc 33860434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 45 - 315
Target Start/End: Original strand, 34146086 - 34146364
Alignment:
Q  45 cactttcaatctgaatttgccaaaagattggatcaatttatgctccattatcaaggtgacatgatccattcattccgagtaaatttttcattaggcaatg 144  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |||||||| |||  | |||||||| ||| ||||| | ||||    
T  34146086 cactttcaatctgaatttgccacaagattggatcaatttatgctccattataaaggtgccatgatccgttccattcgagtaaaatttccattatgtaatg 34146185  T
Q  145 aa--------tctcattgatagattgatctctaaaggaattgctaagggtgtcaaacgtattgaactgctcttctcatatgaaaccagtgatactaatga 236  Q
    ||        | ||||||||||||||||||| ||||||||||||||||||| | ||| |||| |||| |||||||| | |||||| | |||||||| |      
T  34146186 aacatagggatgtcattgatagattgatctccaaaggaattgctaagggtgccgaacatattcaacttctcttctcttttgaaacaactgatactactat 34146285  T
Q  237 ttttattttgccatacaaatttccccttactctcttatgtgacaatgattctttgtcatatctgcacctacaaaactgc 315  Q
    || ||||||||||||||||||| |||||| |||||||  | | ||||||||| || | ||| |||||||||||||||||    
T  34146286 ttctattttgccatacaaattttcccttattctcttacctaagaatgattctgtgacctatttgcacctacaaaactgc 34146364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 45 - 315
Target Start/End: Complemental strand, 34181349 - 34181071
Alignment:
Q  45 cactttcaatctgaatttgccaaaagattggatcaatttatgctccattatcaaggtgacatgatccattcattccgagtaaatttttcattaggcaatg 144  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |||||||| |||  | |||||||| ||| ||||| | ||||    
T  34181349 cactttcaatctgaatttgccacaagattggatcaatttatgctccattataaaggtgccatgatccgttccattcgagtaaaatttccattatgtaatg 34181250  T
Q  145 aa--------tctcattgatagattgatctctaaaggaattgctaagggtgtcaaacgtattgaactgctcttctcatatgaaaccagtgatactaatga 236  Q
    ||        | ||||||||||||||||||| ||||||||||||||||||| | ||| |||| |||| |||||||| | |||||| | |||||||| |      
T  34181249 aacatagggatgtcattgatagattgatctccaaaggaattgctaagggtgccgaacatattcaacttctcttctcttttgaaacaactgatactactat 34181150  T
Q  237 ttttattttgccatacaaatttccccttactctcttatgtgacaatgattctttgtcatatctgcacctacaaaactgc 315  Q
    || ||||||||||||||||||| |||||| |||||||  | | ||||||||| || | ||| |||||||||||||||||    
T  34181149 ttctattttgccatacaaattttcccttattctcttacctaagaatgattctgtgacctatttgcacctacaaaactgc 34181071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 45585302 - 45585158
Alignment:
Q  1 tgtttgactataacacaattcaagacttaccaaaaagccttccacactttcaatctgaatttgccaaaagattggatcaatttatgctccattatcaagg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| | | ||||    
T  45585302 tgtttgactataacacaattcaagacttaccaaaaagccttccactctttcaatctgaatttgccacaagattggatcaatttatgctccactgtaaagg 45585203  T
Q  101 tgacatgatccattcattccgagtaaatttttcattaggcaatgaa 146  Q
    || |||||| | |||  |||||||||| ||| ||||||| ||||||    
T  45585202 tgccatgat-cgttccatccgagtaaaatttccattaggtaatgaa 45585158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 43027162 - 43027400
Alignment:
Q  1 tgtttgactataacacaattcaagacttaccaaaaagccttccacactttcaatctgaatttgccaaaagattggatcaatttatgctccattatcaagg 100  Q
    |||||||||||||||||||||||||| ||||||| |  |||||||   |||||||| ||||||||| | |||| ||||||||||||||||||||| ||||    
T  43027162 tgtttgactataacacaattcaagacctaccaaacacacttccac---ttcaatctcaatttgccacaggattcgatcaatttatgctccattataaagg 43027258  T
Q  101 tgacatgatccattcattccgagtaaatttttcattaggcaatga--------atctcattgatagattgatctctaaaggaa----ttgctaagggtgt 188  Q
    || ||| |||| |||| |||||||||| ||| ||||||| |||||        ||  |||||||||||||||||| |||||||    |||||||||| ||    
T  43027259 tgccatcatccgttcaatccgagtaaaatttccattaggtaatgaacatagggatgccattgatagattgatctccaaaggaattgcttgctaagggggt 43027358  T
Q  189 caaacgtattgaactgctcttctcatatgaaaccagtgatac 230  Q
    |||||| |||||||| ||||| |||| |||||| | ||||||    
T  43027359 caaacgaattgaacttctcttgtcatctgaaacaaatgatac 43027400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 44 - 138
Target Start/End: Complemental strand, 35083716 - 35083622
Alignment:
Q  44 acactttcaatctgaatttgccaaaagattggatcaatttatgctccattatcaaggtgacatgatccattcattccgagtaaatttttcattag 138  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||| ||||||||| |||||||||| ||| ||||||    
T  35083716 acactttcaatctgaatttgccacaagattggatcaatttatgctccattataaaggtgccatcatccattcaatccgagtaaaatttccattag 35083622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 48 - 387
Target Start/End: Complemental strand, 38158025 - 38157669
Alignment:
Q  48 tttcaatctgaatttgccaaaagattggatcaatttatgctccattatcaaggtgacatgatccattcattccgagtaaatttttcattagg-------- 139  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||| |||||| ||||||||   |||| ||||| ||| |||| |||||||            
T  38158025 tttcaatctgaatttgccaaaagattggatcaattcatgctgcattttcaaggcgacatgattagttcaatccgactaagttttccattaggtcctaaat 38157926  T
Q  140 -caatgaatctcattgatagattgatctctaaaggaattgctaagggtgtcaaacgtattgaactgctcttctcatatgaaaccagtgatactaatgatt 238  Q
     |||||| || |||||| ||| ||||  | ||||||||||||||||||| ||||||||||||| |||||||||||| |||||| | |||| | | | |||    
T  38157925 acaatgattc-cattgacagaatgattaccaaaggaattgctaagggtgccaaacgtattgaattgctcttctcatctgaaactaatgatccaagtcatt 38157827  T
Q  239 tt---------attttgccatacaaatttccccttactctcttatgtgacaatgattctttgtcatatctgcacctacaaaactgcttcctagtagcacc 329  Q
    ||         ||   || |||||| ||| || ||||||||||||  |||| | | ||| |  | ||||| ||||||||||| ||| |||||||||||||    
T  38157826 ttttgcgtcgaatagagctatacaagttttcctttactctcttattggacactaactctctcacttatcttcacctacaaaattgcctcctagtagcacc 38157727  T
Q  330 tatgaacttatctggattcaataacttgagaactcttgtgctgcatctagttgatgtg 387  Q
    | |  |||| |||||||| || || ||||||||||||||| |||| |||||| |||||    
T  38157726 tcttgacttctctggattgaagaatttgagaactcttgtgttgcaactagttcatgtg 38157669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 48 - 221
Target Start/End: Complemental strand, 38166923 - 38166742
Alignment:
Q  48 tttcaatctgaatttgccaaaagattggatcaatttatgctccattatcaaggtgacatgatccattcattccgagtaaatttttcattaggcaatgaat 147  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||| |||||   |||| |||||||||||||| |||||||  ||||||    
T  38166923 tttcaatctgaatttgccaaaagattggatcaattcatgctgcattatcaagatgatatgattagttcaatccgagtaaattttccattaggtgatgaat 38166824  T
Q  148 --------ctcattgatagattgatctctaaaggaattgctaagggtgtcaaacgtattgaactgctcttctcatatgaaac 221  Q
             |||||| ||||||||| ||  ||||||| |||||||| | |||| |||||||||| || || |||||||||||    
T  38166823 atagatcggtcattggtagattgatttcccaaggaatcgctaagggagccaaaagtattgaacttctattgtcatatgaaac 38166742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 48 - 221
Target Start/End: Complemental strand, 38150286 - 38150106
Alignment:
Q  48 tttcaatctgaatttgccaaaagattggatcaatttatgctccattatcaaggtgacatgatccattcattccgagtaaatttttcattagg-------c 140  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||| |||||   |||| |||||||||||||| |||||||       |    
T  38150286 tttcaatctgaatttgccaaaagattggatcaattcatgctgcattatcaagatgatatgattagttcaatccgagtaaattttccattaggttctaaac 38150187  T
Q  141 aatgaatctcattgatagattgatctctaaaggaattgctaagggtgtcaaacgtattgaactgctcttctcatatgaaac 221  Q
    |    ||   ||||| ||| |||| || ||||||||| ||||||||| ||||||||||||| |||||||||||| ||||||    
T  38150186 acaagatgcaattgacagaatgatttccaaaggaattactaagggtgccaaacgtattgaattgctcttctcatctgaaac 38150106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 151 - 369
Target Start/End: Original strand, 37883446 - 37883670
Alignment:
Q  151 attgatagattgatctctaaaggaattgctaagggtgtcaaacgtattgaactgctcttctcatatgaaaccagtgatactaatgattttattttg---- 246  Q
    |||||| |||||||  | |||||| |||||||||||||||||||||||||||  ||||||||||||  ||  ||||||||| ||   |||||||||        
T  37883446 attgattgattgattaccaaaggagttgctaagggtgtcaaacgtattgaaccactcttctcatatataattagtgatacttat---tttattttgaatc 37883542  T
Q  247 -----ccatacaaatttccccttactctcttatgtgacaatgattctttgtcatatctgcacctacaaaactgcttcctagtagcacctatgaacttatc 341  Q
         |||||||||||| || |||||||||||| |||||  |||||| |  | |||||| |||||||||||||   |||||||||||||||| | || ||    
T  37883543 tagagccatacaaattttcctttactctcttatctgacaccgattctctaacgtatctgtacctacaaaactgtcgcctagtagcacctatggaattttc 37883642  T
Q  342 tggattcaataacttgagaactcttgtg 369  Q
    |||||| || || |||||||||||||||    
T  37883643 tggattgaagaatttgagaactcttgtg 37883670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 234 - 388
Target Start/End: Original strand, 43027587 - 43027731
Alignment:
Q  234 tgattttattttgccatacaaatttccccttactctcttatgtgacaatgattctttgtcatatctgcacctacaaaactgcttcctagtagcacctatg 333  Q
    ||||| ||||| |||||||||||||||||||||||| |||| |||| ||||||||  | ||||||||||||||||||| ||| ||||||||| |||        
T  43027587 tgattctatttcgccatacaaatttccccttactcttttatctgactatgattctccgacatatctgcacctacaaaagtgcctcctagtagaacc---- 43027682  T
Q  334 aacttatctggattcaataacttgagaactcttgtgctgcatctagttgatgtga 388  Q
          ||||||||||| || ||||||| ||||||| ||||||||||| ||||||    
T  43027683 ------tctggattcaaaaatttgagaattcttgtgttgcatctagtttatgtga 43027731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 234 - 388
Target Start/End: Complemental strand, 35073442 - 35073288
Alignment:
Q  234 tgattttattttgccatacaaatttccccttactctcttatgtgacaatgattctttgtcatatctgcacctacaaaactgcttcctagtagcacctatg 333  Q
    ||||||| |||||||||||| |||||||| ||||||||||| || |||||||||| |  | ||||||||||||||||||| | ||   | || || | ||    
T  35073442 tgattttgttttgccatacatatttccccctactctcttatctggcaatgattctctcacttatctgcacctacaaaactacctcagtgcagaacatctg 35073343  T
Q  334 aacttatctggattcaataacttgagaactcttgtgctgcatctagttgatgtga 388  Q
     |||  |||||||||||||| ||||||||||||||| |||||||| || ||||||    
T  35073342 gactactctggattcaataatttgagaactcttgtgttgcatctaattaatgtga 35073288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 48 - 221
Target Start/End: Complemental strand, 38188158 - 38187977
Alignment:
Q  48 tttcaatctgaatttgccaaaagattggatcaatttatgctccattatcaaggtgacatgatccattcattccgagtaaatttttcattaggcaatgaa- 146  Q
    |||||||||||||||| || ||||||||||||||| ||||| |||||||||||||  || |||| |||| | |||||||||||| ||||||  | | ||     
T  38188158 tttcaatctgaatttgtcacaagattggatcaattcatgctacattatcaaggtgctatcatccgttcagttcgagtaaattttccattagatactaaac 38188059  T
Q  147 -------tctcattgatagattgatctctaaaggaattgctaagggtgtcaaacgtattgaactgctcttctcatatgaaac 221  Q
           | ||||||| ||| |||| || ||||||||||||||||||  | ||||||||||| ||||||||||| |||||||    
T  38188058 acagtgttgtcattgacagagtgatttccaaaggaattgctaagggttccgaacgtattgaattgctcttctcaaatgaaac 38187977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 35084746 - 35084594
Alignment:
Q  1 tgtttgactataacacaattcaagacttaccaaaaagccttccac---------------actttcaatctgaatttgccaaaagattggatcaatttat 85  Q
    |||||||||||||||||||||||||||||||||| | ||||||||               ||||||||||||||||| ||| ||||||||||||||||||    
T  35084746 tgtttgactataacacaattcaagacttaccaaacatccttccactctttcaaatatttcactttcaatctgaatttaccacaagattggatcaatttat 35084647  T
Q  86 gctccattatcaaggtgacatgatccattcattccgagtaaatttttcattag 138  Q
    |||||||||| |||||  ||| |||  |||| ||||||| |||||| ||||||    
T  35084646 gctccattataaaggtcccatcatcagttcaatccgagtcaattttccattag 35084594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 45 - 138
Target Start/End: Complemental strand, 35073636 - 35073543
Alignment:
Q  45 cactttcaatctgaatttgccaaaagattggatcaatttatgctccattatcaaggtgacatgatccattcattccgagtaaatttttcattag 138  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||  ||| |||  |||| ||||||| |||||| ||||||    
T  35073636 cactttcaatctgaatttaccacaagattggatcaatttatgctccattataaaggtcccatcatcagttcaatccgagtcaattttccattag 35073543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 247 - 388
Target Start/End: Complemental strand, 35099766 - 35099625
Alignment:
Q  247 ccatacaaatttccccttactctcttatgtgacaatgattctttgtcatatctgcacctacaaaactgcttcctagtagcacctatgaacttatctggat 346  Q
    ||||||| |||||||| ||||||||||| || |||||||||| |  | ||||||||||||||||||||| ||   | || || | || ||   |||||||    
T  35099766 ccatacatatttccccctactctcttatctggcaatgattctctcacttatctgcacctacaaaactgcctcagtgcagaacatctggaccactctggat 35099667  T
Q  347 tcaataacttgagaactcttgtgctgcatctagttgatgtga 388  Q
    ||||||| ||||||||||||||| |||||||| || ||||||    
T  35099666 tcaataatttgagaactcttgtgttgcatctaattaatgtga 35099625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 45 - 138
Target Start/End: Complemental strand, 35099988 - 35099895
Alignment:
Q  45 cactttcaatctgaatttgccaaaagattggatcaatttatgctccattatcaaggtgacatgatccattcattccgagtaaatttttcattag 138  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||  ||| |||  |||| ||||||| || ||| ||||||    
T  35099988 cactttcaatctgaatttaccacaagattggatcaatttatgctccattataaaggtcccatcatcagttcaatccgagtcaaatttccattag 35099895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 150 - 214
Target Start/End: Complemental strand, 35083587 - 35083523
Alignment:
Q  150 cattgatagattgatctctaaaggaattgctaagggtgtcaaacgtattgaactgctcttctcat 214  Q
    |||| ||||||||||||| |||||||||||||||||||||||||| |||||||| ||||| ||||    
T  35083587 cattaatagattgatctccaaaggaattgctaagggtgtcaaacgaattgaacttctcttgtcat 35083523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 150 - 214
Target Start/End: Complemental strand, 35084559 - 35084495
Alignment:
Q  150 cattgatagattgatctctaaaggaattgctaagggtgtcaaacgtattgaactgctcttctcat 214  Q
    |||| ||||||||||||| |||||||||||||||||||||||||| |||||||| ||||| ||||    
T  35084559 cattaatagattgatctccaaaggaattgctaagggtgtcaaacgaattgaacttctcttgtcat 35084495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 150 - 214
Target Start/End: Complemental strand, 35099860 - 35099796
Alignment:
Q  150 cattgatagattgatctctaaaggaattgctaagggtgtcaaacgtattgaactgctcttctcat 214  Q
    |||| ||||||||||||| |||||||||||||||||||||||||| |||||||| ||||| ||||    
T  35099860 cattaatagattgatctccaaaggaattgctaagggtgtcaaacgaattgaacttctcttgtcat 35099796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 281 - 393
Target Start/End: Complemental strand, 38173251 - 38173139
Alignment:
Q  281 atgattctttgtcatatctgcacctacaaaactgcttcctagtagcacctatgaacttatctggattcaataacttgagaactcttgtgctgcatctagt 380  Q
    ||||||||||| | |||||||| ||||| || |||  | | ||||||||||| || |||||||| |||||||| ||||||||||||||| ||||||| ||    
T  38173251 atgattctttgacgtatctgcatctacagaaatgccacttggtagcacctataaatttatctggtttcaataatttgagaactcttgtgttgcatcttgt 38173152  T
Q  381 tgatgtgaagcag 393  Q
    || ||| ||||||    
T  38173151 tgttgtaaagcag 38173139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 247 - 388
Target Start/End: Complemental strand, 35084465 - 35084324
Alignment:
Q  247 ccatacaaatttccccttactctcttatgtgacaatgattctttgtcatatctgcacctacaaaactgcttcctagtagcacctatgaacttatctggat 346  Q
    ||||||| ||| |||| ||||||||||| || |||||||||| |  | ||||||||||||||||||||| ||   | || || | || |||  |||||||    
T  35084465 ccatacatattcccccctactctcttatctggcaatgattctctcacttatctgcacctacaaaactgcctcagtgcagaacatctggactactctggat 35084366  T
Q  347 tcaataacttgagaactcttgtgctgcatctagttgatgtga 388  Q
    ||||||| |||||||||| |||| |||||||| || ||||||    
T  35084365 tcaataatttgagaactcctgtgttgcatctaattaatgtga 35084324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 150 - 214
Target Start/End: Complemental strand, 35073508 - 35073444
Alignment:
Q  150 cattgatagattgatctctaaaggaattgctaagggtgtcaaacgtattgaactgctcttctcat 214  Q
    |||| ||||||||||||| ||| |||||||||||||||||||||| |||||||| ||||| ||||    
T  35073508 cattaatagattgatctccaaacgaattgctaagggtgtcaaacgaattgaacttctcttgtcat 35073444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 169 - 220
Target Start/End: Complemental strand, 38173360 - 38173309
Alignment:
Q  169 aaaggaattgctaagggtgtcaaacgtattgaactgctcttctcatatgaaa 220  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||| |||    
T  38173360 aaaggaattgctaagggtgtggaacgtattgaactgctcttctcatatcaaa 38173309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 52 - 111
Target Start/End: Complemental strand, 38286548 - 38286489
Alignment:
Q  52 aatctgaatttgccaaaagattggatcaatttatgctccattatcaaggtgacatgatcc 111  Q
    ||||||||||| ||  |||| |||||||||| ||||| ||||||||||||||||||||||    
T  38286548 aatctgaatttaccgcaagagtggatcaattcatgctgcattatcaaggtgacatgatcc 38286489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 34 - 139
Target Start/End: Original strand, 37883317 - 37883422
Alignment:
Q  34 aaagccttccacactttcaatctgaatttgccaaaagattggatcaatttatgctccattatcaaggtgacatgatccattcattccgagtaaatttttc 133  Q
    ||||||| |||| |||| ||||||| |||  || ||||||||||||||| ||||| ||| ||||||||  |||||||  |||| ||||| | |||||| |    
T  37883317 aaagcctcccactctttgaatctgatttttacacaagattggatcaattcatgctgcatcatcaaggtaccatgatcagttcaatccgactcaattttcc 37883416  T
Q  134 attagg 139  Q
    ||||||    
T  37883417 attagg 37883422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 322 - 387
Target Start/End: Complemental strand, 38187875 - 38187810
Alignment:
Q  322 gtagcacctatgaacttatctggattcaataacttgagaactcttgtgctgcatctagttgatgtg 387  Q
    |||||| ||| | |||| ||||||||||| || ||||||||||||||| |||| ||||||||||||    
T  38187875 gtagcatctaaggacttgtctggattcaagaatttgagaactcttgtgttgcaactagttgatgtg 38187810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 42796448 - 42796481
Alignment:
Q  1 tgtttgactataacacaattcaagacttaccaaa 34  Q
    ||||||||||||||||||||||||||||||||||    
T  42796448 tgtttgactataacacaattcaagacttaccaaa 42796481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 35073695 - 35073651
Alignment:
Q  1 tgtttgactataacacaattcaagacttaccaaaaagccttccac 45  Q
    |||||||||||||||||| ||||||||||||||| | ||||||||    
T  35073695 tgtttgactataacacaactcaagacttaccaaacatccttccac 35073651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 35100047 - 35100003
Alignment:
Q  1 tgtttgactataacacaattcaagacttaccaaaaagccttccac 45  Q
    ||||||||||||||||| |||||||||||||||| | ||||||||    
T  35100047 tgtttgactataacacacttcaagacttaccaaacatccttccac 35100003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 243 - 366
Target Start/End: Complemental strand, 38150072 - 38149949
Alignment:
Q  243 tttgccatacaaatttccccttactctcttatgtgacaatgattctttgtcatatctgcacctacaaaactgcttcctagtagcacctatgaacttatct 342  Q
    ||||| |||||||||| || ||||||||||||  |||| ||||||| |  | ||||| ||||||||||  |||| |||| |||||||| |  | || ||     
T  38150072 tttgctatacaaattttcctttactctcttatcggacactgattctctcacttatcttcacctacaaagttgctacctactagcaccttttgatttctca 38149973  T
Q  343 ggattcaataacttgagaactctt 366  Q
    |||||||| || ||||||||||||    
T  38149972 ggattcaagaatttgagaactctt 38149949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 107; Significance: 2e-53; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 1 - 388
Target Start/End: Complemental strand, 4164565 - 4164161
Alignment:
Q  1 tgtttgactataacacaattcaagacttaccaaaaagccttccacactttcaatctgaatttgccaaaagattggatcaatttatgctccattatcaagg 100  Q
    ||||| ||||||| ||||||||||| || ||||||| | ||||||   | |||||| ||||||||| || |||||||||||| ||| | ||||| |||||    
T  4164565 tgtttcactataatacaattcaagagttgccaaaaaactttccacttctccaatctcaatttgccacaatattggatcaattcatgatgcattaccaagg 4164466  T
Q  101 tgacatgatccattcattccgagtaaatttttcattagg----ca----atgaatctcattgatagattgatctctaaaggaattgctaagggtgtcaaa 192  Q
    || ||||||||||||| |||||||||||||| |||||||    ||    | | || ||||||| | |||||| || ||||||||||||||||||| ||||    
T  4164465 tgccatgatccattcaatccgagtaaattttccattaggtgaccaacatagggatgtcattgacaaattgatttccaaaggaattgctaagggtgccaaa 4164366  T
Q  193 cgtattgaactgctcttctcatatgaaaccagtgatactaatgattttatttt---------gccatacaaatttccccttactctcttatgtgacaatg 283  Q
    |||||||||||||| |||||  | ||||| | | |||||| ||||||||||||         |||||||||||||||| |||||||||||| |||||       
T  4164365 cgtattgaactgctattctcgaacgaaactaattatactactgattttatttttgaaggggagccatacaaatttccctttactctcttatctgacacat 4164266  T
Q  284 attctttgtcatatctgcacctacaaaactgcttcctagtagcacctatgaacttatctggattcaataacttgagaactcttgtgctgcatctagttga 383  Q
    | ||| |  || ||||||||||| | || ||| ||||||||||||| ||| |||| ||||||||||| || ||||||||||||||| ||||| || ||||    
T  4164265 actctctcacacatctgcacctagagaaatgcctcctagtagcaccaatggacttctctggattcaagaatttgagaactcttgtgttgcatataattga 4164166  T
Q  384 tgtga 388  Q
    |||||    
T  4164165 tgtga 4164161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 1 - 388
Target Start/End: Complemental strand, 4226186 - 4225782
Alignment:
Q  1 tgtttgactataacacaattcaagacttaccaaaaagccttccacactttcaatctgaatttgccaaaagattggatcaatttatgctccattatcaagg 100  Q
    ||||| ||||||| ||||||||||| || ||||||| | ||||||   | |||||| ||||||||| || |||||||||||| ||| | ||||| |||||    
T  4226186 tgtttcactataatacaattcaagagttgccaaaaaactttccacttctccaatctcaatttgccacaatattggatcaattcatgatgcattaccaagg 4226087  T
Q  101 tgacatgatccattcattccgagtaaatttttcattagg----ca----atgaatctcattgatagattgatctctaaaggaattgctaagggtgtcaaa 192  Q
    || ||||||||||||| |||||||||||||| |||||||    ||    | | || ||||||| | |||||| || ||||||||||||||||||| ||||    
T  4226086 tgccatgatccattcaatccgagtaaattttccattaggtgaccaacatagggatgtcattgacaaattgatttccaaaggaattgctaagggtgccaaa 4225987  T
Q  193 cgtattgaactgctcttctcatatgaaaccagtgatactaatgattttatttt---------gccatacaaatttccccttactctcttatgtgacaatg 283  Q
    |||||||||||||| |||||  | ||||| | | |||||| ||||||||||||         |||||||||||||||| |||||||||||| |||||       
T  4225986 cgtattgaactgctattctcgaacgaaactaattatactactgattttatttttgaaggggagccatacaaatttccctttactctcttatctgacacat 4225887  T
Q  284 attctttgtcatatctgcacctacaaaactgcttcctagtagcacctatgaacttatctggattcaataacttgagaactcttgtgctgcatctagttga 383  Q
    | ||| |  || ||||||||||| | || ||| ||||||||||||| ||| |||| ||||||||||| || ||||||||||||||| ||||| || ||||    
T  4225886 actctctcacacatctgcacctagagaaatgcctcctagtagcaccaatggacttctctggattcaagaatttgagaactcttgtgttgcatataattga 4225787  T
Q  384 tgtga 388  Q
    |||||    
T  4225786 tgtga 4225782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 45 - 315
Target Start/End: Original strand, 25568732 - 25569010
Alignment:
Q  45 cactttcaatctgaatttgccaaaagattggatcaatttatgctccattatcaaggtgacatgatccattcattccgagtaaatttttcattaggcaatg 144  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||| |||| |||  | |||||||| ||| ||||| | ||||    
T  25568732 cactttcaatctgaatttgccacaagattggatcaatttatgctccattataaaggtgccatcatccgttccattcgagtaaaatttccattatgtaatg 25568831  T
Q  145 aa--------tctcattgatagattgatctctaaaggaattgctaagggtgtcaaacgtattgaactgctcttctcatatgaaaccagtgatactaatga 236  Q
    ||        | ||||| ||||||||||||| ||||||||||||||||||| ||||| ||||||||| |||||||| | |||||| | |||||||| |      
T  25568832 aacatagggatgtcattcatagattgatctccaaaggaattgctaagggtgccaaacatattgaacttctcttctcttctgaaacaactgatactactat 25568931  T
Q  237 ttttattttgccatacaaatttccccttactctcttatgtgacaatgattctttgtcatatctgcacctacaaaactgc 315  Q
    || |||| ||||||||| |||| |||||| |||||||  ||| ||||||||| || | ||| |||||||||||||||||    
T  25568932 ttctattatgccatacagattttcccttattctcttacttgagaatgattctgtgacctatttgcacctacaaaactgc 25569010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 45 - 315
Target Start/End: Original strand, 26002600 - 26002878
Alignment:
Q  45 cactttcaatctgaatttgccaaaagattggatcaatttatgctccattatcaaggtgacatgatccattcattccgagtaaatttttcattaggcaatg 144  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||| |||| |||  | |||||||| ||| ||||| | ||||    
T  26002600 cactttcaatctgaatttgccacaagattggatcaatttatgctccattataaaggtgccatcatccgttccattcgagtaaaatttccattatgtaatg 26002699  T
Q  145 aa--------tctcattgatagattgatctctaaaggaattgctaagggtgtcaaacgtattgaactgctcttctcatatgaaaccagtgatactaatga 236  Q
    ||        | ||||||||||||||||||| |||||||||||||| |||| ||||| ||||||||| |||||||| | |||||| | | |||||| |      
T  26002700 aacatagggatgtcattgatagattgatctccaaaggaattgctaatggtgccaaacatattgaacttctcttctcttctgaaacaactaatactactat 26002799  T
Q  237 ttttattttgccatacaaatttccccttactctcttatgtgacaatgattctttgtcatatctgcacctacaaaactgc 315  Q
    || |||| ||||||||| |||| |||||| |||||||  ||| ||||||||| || | ||| |||||||||||||||||    
T  26002800 ttctattatgccatacagattttcccttattctcttacttgagaatgattctgtgacctatttgcacctacaaaactgc 26002878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 45 - 315
Target Start/End: Original strand, 25563117 - 25563395
Alignment:
Q  45 cactttcaatctgaatttgccaaaagattggatcaatttatgctccattatcaaggtgacatgatccattcattccgagtaaatttttcattaggcaatg 144  Q
    |||||||||||||||||| ||| ||||||||||||||||||||| |||||| |||||| ||| |||| |||  | |||||||| ||| ||||| | |||     
T  25563117 cactttcaatctgaattttccacaagattggatcaatttatgctgcattataaaggtgccatcatccgttccattcgagtaaaatttccattatgtaatc 25563216  T
Q  145 aa--------tctcattgatagattgatctctaaaggaattgctaagggtgtcaaacgtattgaactgctcttctcatatgaaaccagtgatactaatga 236  Q
    ||        | ||||| ||||||||||||| ||||||||||||||||||| ||||| ||||||||| |||||||| | |||||| | |||||||| |      
T  25563217 aacatagggatgtcattcatagattgatctccaaaggaattgctaagggtgccaaacatattgaacttctcttctcttctgaaacaactgatactactat 25563316  T
Q  237 ttttattttgccatacaaatttccccttactctcttatgtgacaatgattctttgtcatatctgcacctacaaaactgc 315  Q
    || |||| ||||||||| |||| |||||| |||||||  ||| ||||||||| || | ||| |||||||||||||||||    
T  25563317 ttctattatgccatacagattttcccttattctcttacttgagaatgattctgtgacctatttgcacctacaaaactgc 25563395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 45 - 315
Target Start/End: Original strand, 26102629 - 26102907
Alignment:
Q  45 cactttcaatctgaatttgccaaaagattggatcaatttatgctccattatcaaggtgacatgatccattcattccgagtaaatttttcattaggcaatg 144  Q
    |||||||||||||||||| ||| ||||||||||||||||||||| |||||| |||||| ||| |||| |||  | |||||||| ||| ||||| | |||     
T  26102629 cactttcaatctgaattttccacaagattggatcaatttatgctgcattataaaggtgccatcatccgttccattcgagtaaaatttccattatgtaatc 26102728  T
Q  145 aa--------tctcattgatagattgatctctaaaggaattgctaagggtgtcaaacgtattgaactgctcttctcatatgaaaccagtgatactaatga 236  Q
    ||        | ||||| ||||||||||||| ||||||||||||||||||| ||||| ||||||||| |||||||| | |||||| | |||||||| |      
T  26102729 aacatagggatgtcattcatagattgatctccaaaggaattgctaagggtgccaaacatattgaacttctcttctcttctgaaacaactgatactactat 26102828  T
Q  237 ttttattttgccatacaaatttccccttactctcttatgtgacaatgattctttgtcatatctgcacctacaaaactgc 315  Q
    || |||| ||||||||| |||| |||||| |||||||  ||| ||||||||| || | ||| |||||||||||||||||    
T  26102829 ttctattatgccatacagattttcccttattctcttacttgagaatgattctgtgacctatttgcacctacaaaactgc 26102907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 94; Significance: 9e-46; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 45 - 315
Target Start/End: Complemental strand, 23894 - 23616
Alignment:
Q  45 cactttcaatctgaatttgccaaaagattggatcaatttatgctccattatcaaggtgacatgatccattcattccgagtaaatttttcattaggcaatg 144  Q
    |||| ||||||| ||||||||| ||| |||||||||||||||||||||||| |||||| ||| |||| |||  | |||||||| ||| ||||||| ||||    
T  23894 cactatcaatctaaatttgccacaagtttggatcaatttatgctccattataaaggtgtcattatccgttccattcgagtaaaatttccattaggtaatg 23795  T
Q  145 aa--------tctcattgatagattgatctctaaaggaattgctaagggtgtcaaacgtattgaactgctcttctcatatgaaaccagtgatactaatga 236  Q
    ||        | ||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||| |||||||| | | |||| | |||||||| |      
T  23794 aacatagggatgtcattgatagattgatctccaaaggaattgctaagggtgccaaacatattgaacttctcttctcttcttaaacaactgatactactat 23695  T
Q  237 ttttattttgccatacaaatttccccttactctcttatgtgacaatgattctttgtcatatctgcacctacaaaactgc 315  Q
    || |||| ||||||||| |||| |||||| |||||||  ||| ||||||||| || | ||| |||||||||||||||||    
T  23694 ttctattatgccatacagattttcccttattctcttacttgagaatgattctgtgacctatttgcacctacaaaactgc 23616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 44 - 138
Target Start/End: Original strand, 9663534 - 9663628
Alignment:
Q  44 acactttcaatctgaatttgccaaaagattggatcaatttatgctccattatcaaggtgacatgatccattcattccgagtaaatttttcattag 138  Q
    |||||||||||||||||||| || |||||||||||||||||||||||||||| |||||| ||| ||||||||| |||||||||| ||| ||||||    
T  9663534 acactttcaatctgaatttgtcacaagattggatcaatttatgctccattataaaggtgccatcatccattcaatccgagtaaaatttccattag 9663628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 149 - 221
Target Start/End: Complemental strand, 12409915 - 12409843
Alignment:
Q  149 tcattgatagattgatctctaaaggaattgctaagggtgtcaaacgtattgaactgctcttctcatatgaaac 221  Q
    ||||||| ||| |||| || ||||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  12409915 tcattgacagaatgatttccaaaggaattgccaagggtgtcaaacgtattgaactgctcttctcatatcaaac 12409843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 149 - 221
Target Start/End: Complemental strand, 12421975 - 12421903
Alignment:
Q  149 tcattgatagattgatctctaaaggaattgctaagggtgtcaaacgtattgaactgctcttctcatatgaaac 221  Q
    ||||||| ||| |||| || ||||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  12421975 tcattgacagaatgatttccaaaggaattgccaagggtgtcaaacgtattgaactgctcttctcatatcaaac 12421903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 130
Target Start/End: Complemental strand, 12410023 - 12409942
Alignment:
Q  49 ttcaatctgaatttgccaaaagattggatcaatttatgctccattatcaaggtgacatgatccattcattccgagtaaattt 130  Q
    |||||||| |||||||||  |||||||||||| | ||||| ||||||||||||  ||| |||| |||| ||||| | |||||    
T  12410023 ttcaatctcaatttgccactagattggatcaagtcatgctgcattatcaaggttccatcatcctttcaatccgactcaattt 12409942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 130
Target Start/End: Complemental strand, 12422083 - 12422002
Alignment:
Q  49 ttcaatctgaatttgccaaaagattggatcaatttatgctccattatcaaggtgacatgatccattcattccgagtaaattt 130  Q
    |||||||| |||||||||  |||||||||||| | ||||| ||||||||||||  ||| |||| |||| ||||| | |||||    
T  12422083 ttcaatctcaatttgccactagattggatcaagtcatgctgcattatcaaggttccatcatcctttcaatccgactcaattt 12422002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 52 - 122
Target Start/End: Complemental strand, 2223948 - 2223878
Alignment:
Q  52 aatctgaatttgccaaaagattggatcaatttatgctccattatcaaggtgacatgatccattcattccga 122  Q
    ||||||||||||||  |||| |||||||||| ||||| ||||||||||||||||||||||||||| |||||    
T  2223948 aatctgaatttgccgcaagagtggatcaattcatgctgcattatcaaggtgacatgatccattcaatccga 2223878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 169 - 216
Target Start/End: Complemental strand, 2223823 - 2223776
Alignment:
Q  169 aaaggaattgctaagggtgtcaaacgtattgaactgctcttctcatat 216  Q
    ||||||||||||||||||||||||||| ||||| || |||| ||||||    
T  2223823 aaaggaattgctaagggtgtcaaacgtcttgaattgatcttatcatat 2223776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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