View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20758_high_13 (Length: 447)
Name: NF20758_high_13
Description: NF20758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20758_high_13 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 19 - 444
Target Start/End: Complemental strand, 29016182 - 29015757
Alignment:
| Q |
19 |
ggactttgacttaattgcatcataaactcttccaatatgttcatcaccaaatccacatcagaaaccattataagatcattcactgttacttcctcgaatt |
118 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29016182 |
ggactttgacttatttgcaacataaactcttccaatatgttcatcaccaaatcaacatcacaaaccattataagatcattcactgttacttcctcgaatt |
29016083 |
T |
|
| Q |
119 |
gaagtccaacccttttaaccaattcgatctttaaagacgataaaactttcaaatcattggcaactttcaaaagcttaagaaggaagttacaagaaacaac |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
29016082 |
gaagtccaacccttttaaccaattcgatctttaaagacgaaaaaactttcaaatcattggcaactttcaaaagcttaagaaggaagctacaagaaacaac |
29015983 |
T |
|
| Q |
219 |
gccttttgcagccggaagcaaattcactattgattctaaaagcaaactgtactttgatgctatttcacttcttgaatcagaatcagaaccagtttttggt |
318 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
29015982 |
accttttgcagctggaagcaaattcactattgattctaaaagcaaactgtactttgatgctatttcacttcttgaatcagaatcggaaccggtttttggt |
29015883 |
T |
|
| Q |
319 |
agccatctagaagcataaattttcaacgcatcaccgatgagatttaaaggcatttttccatcagattttaaagcaatcatgattctccaataaagatcaa |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29015882 |
agccatctagaagcataaattttcaacgcatcaccgatgagatttaaaggcatttttccatcagattttaaagcaatcatgattctccaataaagatcaa |
29015783 |
T |
|
| Q |
419 |
ttttcaattcagctaaatcttcaccc |
444 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
29015782 |
ttttcaattcagctaaatcttcaccc |
29015757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 313 - 413
Target Start/End: Complemental strand, 14129434 - 14129334
Alignment:
| Q |
313 |
tttggtagccatctagaagcataaattttcaacgcatcaccgatgagatttaaaggcatttttccatcagattttaaagcaatcatgattctccaataaa |
412 |
Q |
| |
|
||||||| ||||||||| |||||||||||||| ||||| || ||||||||| |||| | || ||| ||||||| | || ||||| |||||||||||| |
|
|
| T |
14129434 |
tttggtaaccatctagatgcataaattttcaatgcatcgccaatgagatttgaaggaaccttgccaccagatttgattgctatcattgttctccaataaa |
14129335 |
T |
|
| Q |
413 |
g |
413 |
Q |
| |
|
| |
|
|
| T |
14129334 |
g |
14129334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University