View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20758_high_18 (Length: 384)
Name: NF20758_high_18
Description: NF20758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20758_high_18 |
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Alignment Details
Target: chr8 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 7 - 365
Target Start/End: Complemental strand, 4952416 - 4952058
Alignment:
| Q |
7 |
tccaagaatatcctcaaagtctaataaaattctaaccatggttcctagagaaatcagaggagtcaattatctaactcctcctgagaattcattccaagtt |
106 |
Q |
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| T |
4952416 |
tccaacaataccctcaaagtctaataaaattctagccatggttcctagtgagatcagaggagtcaattatctaactcctcctgagaattcattccaagtt |
4952317 |
T |
|
| Q |
107 |
caaccaaactttgtcttaccacagaatgaaattccaaattaccatataaataatcttttaggcagcttaccaaacttccattacccatcatgtttaagca |
206 |
Q |
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| T |
4952316 |
caaccaaactttgtcttaccacagaatgaaattccaaattaccatataaataatcttttaggcagcttaccaaacttccattacccatcatgtttaagca |
4952217 |
T |
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| Q |
207 |
gcaactcaactacttctgatgaagcagatgaacttcagtttaacatcatcgacgaaaggaagcaccgacgaatgatatcaaacagagaatcagctaggag |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4952216 |
gcaactcaactacttctgatgaagcagatgaacttcagtttaacatcatcgatgaaaggaagcaccgacgaatgatatcaaacagagaatcagctaggag |
4952117 |
T |
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| Q |
307 |
atcaaggatgagaaaacaaaaacacttggatgaactttggtcacaagtgatgaaactca |
365 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4952116 |
atcaaggatgaggaaacaaaaacacttggatgaactttggtcacaagtgatgaaactca |
4952058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 136; Significance: 7e-71; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 194 - 365
Target Start/End: Original strand, 10483443 - 10483614
Alignment:
| Q |
194 |
tcatgtttaagcagcaactcaactacttctgatgaagcagatgaacttcagtttaacatcatcgacgaaaggaagcaccgacgaatgatatcaaacagag |
293 |
Q |
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| T |
10483443 |
tcatgtttaagtagcaactcaactacttctgatgaagcagatgaacttcagttcaatatcatcgacgaaaggaagcaccgacgaatgatatcaaatagag |
10483542 |
T |
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| Q |
294 |
aatcagctaggagatcaaggatgagaaaacaaaaacacttggatgaactttggtcacaagtgatgaaactca |
365 |
Q |
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| T |
10483543 |
aatcagctaggagatcaaggatgaggaaacaaaagcacttagatgaactttggtcacaagtggtgagactca |
10483614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 30 - 196
Target Start/End: Original strand, 10483249 - 10483415
Alignment:
| Q |
30 |
ataaaattctaaccatggttcctagagaaatcagaggagtcaattatctaactcctcctgagaattcattccaagttcaaccaaactttgtcttaccaca |
129 |
Q |
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||||||||||| ||||||||||||| || || ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| || ||||| |
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| T |
10483249 |
ataaaattctagccatggttcctagtgagatgagaggagtcaattatctaactcctcttgagaattcattccatgttcaaccaaactttgtattgccaca |
10483348 |
T |
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| Q |
130 |
gaatgaaattccaaattaccatataaataatcttttaggcagcttaccaaacttccattacccatca |
196 |
Q |
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| T |
10483349 |
gaatgaaattccaaattaccatctaagtaatattttaggtactttaccaaacttccattacccatca |
10483415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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