View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20758_high_20 (Length: 380)
Name: NF20758_high_20
Description: NF20758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20758_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 39013685 - 39013325
Alignment:
| Q |
1 |
atacaaaacaattgatggcattttatcacgatcgccttcgtgacacaagggaaaaagagacgaggagtaatgaggaagaaatggatgaagagaaggtaga |
100 |
Q |
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| T |
39013685 |
atacaaaacaattgatggcattttatcacgatcgccttcgtgacacaagggaaaaagagacgaggagtaatgaggaagaaatggatgaagagaaggtaga |
39013586 |
T |
|
| Q |
101 |
ggagcatgaacatgaaagcatcagtagttgctcagatcatgaacttggtgattgtcaatcctcatcatcagcagacacaccatcctcagcaacgtggagt |
200 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
39013585 |
ggagcatgaacatgaaagcatcagtagtggctcagatcatgaacttggtgattgtcaatcctcatcatcagcagacacaccatcctcagcaacatggagt |
39013486 |
T |
|
| Q |
201 |
tatagagacactgatattggagatgattctgatagagttgcatttgtatcctcaccattgccttctcaatctcaatcttgctatgaagatagtagagaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39013485 |
tatagagacactgatattggagatgattctgatagagttgcatttgtatcctcaccattgccttctcaatctcaatcttgctatgaagatagtagagaaa |
39013386 |
T |
|
| Q |
301 |
actctccatctgcaaatcaacgttcaattgtgagtttcattatactcttacacctagattt |
361 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39013385 |
actctccatccgcaaatcaacgttcaattgtgagtttcattatactcttacacctagattt |
39013325 |
T |
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