View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20758_high_24 (Length: 346)
Name: NF20758_high_24
Description: NF20758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20758_high_24 |
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| [»] scaffold0016 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 241; Significance: 1e-133; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 15 - 339
Target Start/End: Complemental strand, 33674242 - 33673917
Alignment:
| Q |
15 |
acaacaactcctgcaatagatagaatattattagtcc-agttaaaattggatggttgatttgaattgatattcagattcaattcaaccagtgatatttaa |
113 |
Q |
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||||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||| |
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| T |
33674242 |
acaacaactcccgcaatagatagaatattattagtcccagttaaaattggacagttgatttgaattgatattaagattcaattcaaccagtgagatttaa |
33674143 |
T |
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| Q |
114 |
ctggactaannnnnnnnccatctatttaattagtcaaggatttctctcnnnnnnngacatatgtaaaaacaccttttacattttactactttgtcaagta |
213 |
Q |
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||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33674142 |
ctggactaattttttttccatctatttaattagtcaaggatttctctctttttttgacatatgtaaaaacaccttttacattttactactttgtcaagta |
33674043 |
T |
|
| Q |
214 |
aaaattcacgtgatgatggttttgatagcacgtgatttgatttactatgatgttgtggttttttctttgctccctcttggatcatggtttttcaatatgg |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
33674042 |
aaaattcacgtgatgatggttttgatagcacgtgatttgatttactatgatgttgtggttttttctttgctccctattggatcatggtttttcaatatgg |
33673943 |
T |
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| Q |
314 |
agagttgttggtggtgctgatgatgt |
339 |
Q |
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|||| ||||||||||||| ||||||| |
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| T |
33673942 |
agaggtgttggtggtgcttatgatgt |
33673917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 17 - 339
Target Start/End: Complemental strand, 33663637 - 33663316
Alignment:
| Q |
17 |
aacaactcctgcaatagatagaatattattagtccagttaaaattggatggttgatttgaattgatattcagattcaattcaaccagtgatatttaactg |
116 |
Q |
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| T |
33663637 |
aacaactcccgcaatagatagaatattatcagtccagttaaaattgcatggttgatttgaattgatattaagattcaattcaactagtgagatttaattg |
33663538 |
T |
|
| Q |
117 |
gactaannnnnnnnccatctatttaattagtcaaggatttctctcnnnnnnngacatatgtaaaaacaccttttacattttactactttgtcaagtaaaa |
216 |
Q |
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| T |
33663537 |
gactaattttttt-ccatctatttaattagttatggatttctctctttttttgacatatgtataagcatcttttacattttactactttgtcaagtaaaa |
33663439 |
T |
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| Q |
217 |
attcacgtgatgatggttttgatagcacgtgatttgatttactatgatgttgtggttttttctttgctccctcttggatcatggtttttcaatatggaga |
316 |
Q |
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| |||||||||||||| | ||||||||| || ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||| |
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| T |
33663438 |
agtcacgtgatgatgggtctgatagcacatggtttgatttactatgatgttgtggttttttctttgcccccacttggatcatggtttttcaagatggaga |
33663339 |
T |
|
| Q |
317 |
gttgttggtggtgctgatgatgt |
339 |
Q |
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| T |
33663338 |
ggtgttggtggtgcttatgatgt |
33663316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 15 - 339
Target Start/End: Complemental strand, 33685429 - 33685114
Alignment:
| Q |
15 |
acaacaactcctgcaatagatagaatattattagtccagttaaaattggatggttgatttgaattgatattcagattcaattcaaccagtgatatttaac |
114 |
Q |
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||||||||||| ||||||||||||||| ||||||||||||||| || | |||||||||||||||||||||| ||||||| | ||| ||||||| |
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| T |
33685429 |
acaacaactcccacaatagatagaatatcattagtccagttaaatatgcacggttgatttgaattgatattca------attcaactactgagatttaac |
33685336 |
T |
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| Q |
115 |
tggactaannnnnnnnccatctatttaattagtcaaggatttctctcnnnnnnngacatatgtaaaaacaccttttacattttactactttgtcaagtaa |
214 |
Q |
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|||||| | ||||||||||||||||||| || || | | | |||||||| || |||| ||||||||||||||||||||||||||| |
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| T |
33685335 |
tggactcattttttt-ccatctatttaattagtcacgggttacagccttttt--gtcatatgtataagcaccatttacattttactactttgtcaagtaa |
33685239 |
T |
|
| Q |
215 |
aaattcacgtgatgatggttttgatagcacgtgatttgatttactatgatgttgtggttttttctttgctccctcttggatcatggtttttcaatatgga |
314 |
Q |
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||| ||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||||| |
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| T |
33685238 |
aaagtcacgggatgatggttttgatagcactttatttgatttactatgatgttgtggttttttccttgctctctcttggatcatggtttttcaagatgga |
33685139 |
T |
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| Q |
315 |
gagttgttggtggtgctgatgatgt |
339 |
Q |
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||| ||||||||||||| ||||||| |
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| T |
33685138 |
gaggtgttggtggtgcttatgatgt |
33685114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 273 - 331
Target Start/End: Complemental strand, 33692392 - 33692334
Alignment:
| Q |
273 |
tttttctttgctccctcttggatcatggtttttcaatatggagagttgttggtggtgct |
331 |
Q |
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| T |
33692392 |
tttttctttgccccctcttggatcatggtttttcaagatggagaggtgatggtggtgct |
33692334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 171 - 249
Target Start/End: Complemental strand, 33692472 - 33692398
Alignment:
| Q |
171 |
catatgtaaaaacaccttttacattttactactttgtcaagtaaaaattcacgtgatgatggttttgatagcacgtgat |
249 |
Q |
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|||||||| || | |||| |||||||||||||||||| |||||| |||||||||||||||||||||| || ||||| |
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| T |
33692472 |
catatgtataagcgccttatacattttactactttgt----taaaaagtcacgtgatgatggttttgatatcatgtgat |
33692398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 122
Target Start/End: Complemental strand, 33692642 - 33692552
Alignment:
| Q |
32 |
agatagaatattattagtccagttaaaattggatggttgatttgaattgatattcagattcaattcaaccagtgatatttaactggactaa |
122 |
Q |
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| T |
33692642 |
agatagaacatcattagtctagtcaaatatcgacggttgaattgaattgatactcagattcaattcaattaatgagatttgactggactaa |
33692552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 183 - 292
Target Start/End: Original strand, 104007 - 104116
Alignment:
| Q |
183 |
caccttttacattttactactttgtcaagtaaaaattcacgtgatgatggttttgatagcacgtgatttgatttactatgatgttgtggttttttctttg |
282 |
Q |
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|||||| |||||||||||||||||| ||||||||| ||| ||||| ||| | ||||||||||||||||||||| ||||||| ||||||||||||||||| |
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| T |
104007 |
caccttatacattttactactttgtgaagtaaaaagtcatgtgataatgagtctgatagcacgtgatttgatttgctatgattttgtggttttttctttg |
104106 |
T |
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| Q |
283 |
ctccctcttg |
292 |
Q |
| |
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| |||||||| |
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| T |
104107 |
ccccctcttg |
104116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 260 - 331
Target Start/End: Original strand, 89521 - 89592
Alignment:
| Q |
260 |
atgatgttgtggttttttctttgctccctcttggatcatggtttttcaatatggagagttgttggtggtgct |
331 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
89521 |
atgatgttgtggttttttctttgccccctcttggatcatggtttttcaagatggagaggtgttggtggtgct |
89592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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