View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20758_high_27 (Length: 333)
Name: NF20758_high_27
Description: NF20758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20758_high_27 |
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Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 52300604 - 52300922
Alignment:
| Q |
1 |
agtaaatcgagaaaaagattggacctatcttgtatttggtccactatccttcattcagctaaattatttgtaggtgtaaacaactnnnnnnnn--ttaaa |
98 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
52300604 |
agtaaatcgagaaaaagattg-acctatcttgtatttggtccactatccttcattcagctaaattatttgtaggtgtaaacaacttaaaaaaaaattaaa |
52300702 |
T |
|
| Q |
99 |
ataataagccaatattcatattggcctttgtcatctacgctgatctttgaatttaacttgaatatcacctataagaataccatttaaaattatttacgta |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52300703 |
ataataagccaatattcatattggcctttgtcatctacgctgatctttgaatttaacttgaatatcacctataagaataccatttaaaattatttacgta |
52300802 |
T |
|
| Q |
199 |
ataaggtgatgaattcaatcaaacacgataagcactgagacgaatagcaaattatgtcaagtggtgaatttataggaataaataaatgtgttactctaac |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52300803 |
ataaggtgatgaattcaatcaaacacgataagcactgagacgaatagcaaattatgtcaagtggtgaatttataggaataaataaatgtgttactctaac |
52300902 |
T |
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| Q |
299 |
ataggatcagagtgttgtgt |
318 |
Q |
| |
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|||||||||||||||||||| |
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| T |
52300903 |
ataggatcagagtgttgtgt |
52300922 |
T |
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