View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20758_high_28 (Length: 320)
Name: NF20758_high_28
Description: NF20758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20758_high_28 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 35830749 - 35830440
Alignment:
| Q |
1 |
tgagaacttttttctgttctgtcatattagagaatgatgtataccaacattaagttggtctgagtagagtgaggctcatattttttaagtaagatattaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
35830749 |
tgagaacttttttctgttctgtcatattagagaatgatgtataccaacattaagttggtctgagtagagtgaggctcatattttttaagtaaggtattaa |
35830650 |
T |
|
| Q |
101 |
gttcgagccttttgaattgaaaacacatggttgagaggggaggtctcactaaaggtggtcagtgagattcttcgagaaaattagtcttaggcgaagtcga |
200 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35830649 |
gttcgagccttttgaattgaaaaaacatggttgagaggggaggtctcactaaaggtggtcagcgagattcttcgagaaaattagtcttaggcgaagtcga |
35830550 |
T |
|
| Q |
201 |
aagataattcacacatataacctgattttttgaaaaatatattacaaaatgagggaacactcaccatcttcggtgctggttcaagagaaattctagctct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
35830549 |
aagataattcacacatataacctgattttttgaaaaatatattacaaaatgagggaacactcaccatctttggtgctggttcaagagaaattctagctct |
35830450 |
T |
|
| Q |
301 |
ggtgatgatg |
310 |
Q |
| |
|
||||||||| |
|
|
| T |
35830449 |
agtgatgatg |
35830440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University