View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20758_high_29 (Length: 316)
Name: NF20758_high_29
Description: NF20758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20758_high_29 |
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| [»] scaffold1315 (1 HSPs) |
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| [»] scaffold1293 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 43439581 - 43439377
Alignment:
| Q |
18 |
tataaccttcttcacgtatttacacaccaattacacaatgctggttttatttgcttgctttaaaaatggtgctttcttacaagggtagctcattccatag |
117 |
Q |
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| T |
43439581 |
tataaccttcttcaagtatttacacaccaattacacaatgctggttttatttgcttgctttaaaaatggtgctttcttacaggggtagctcattccatag |
43439482 |
T |
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| Q |
118 |
gattttaccaagctcctgattttgcacatggcaatagaatgggcggagaatcaatttacggagagatctcctgtaaatgataagtttaagttaaaacttg |
217 |
Q |
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|||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43439481 |
gatt---ccaagctcctgattttgcacatggcgatagaatgggcggagaatcaatttacggagagatctcctgtaaatgataagtttaagttaaaacttg |
43439385 |
T |
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| Q |
218 |
tttgctat |
225 |
Q |
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|||||||| |
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| T |
43439384 |
tttgctat |
43439377 |
T |
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Target: scaffold1315 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: scaffold1315
Description:
Target: scaffold1315; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 228 - 306
Target Start/End: Original strand, 996 - 1074
Alignment:
| Q |
228 |
aaaatcataaattatcagcaactcattctattaattatattgtcaattataaaacacactctccttagtttttcttctt |
306 |
Q |
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| T |
996 |
aaaatcataaattatcagcaactcattttattaattatattgtcaatgataaaacacactctccttagtttttcttctt |
1074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 228 - 306
Target Start/End: Complemental strand, 42757180 - 42757102
Alignment:
| Q |
228 |
aaaatcataaattatcagcaactcattctattaattatattgtcaattataaaacacactctccttagtttttcttctt |
306 |
Q |
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| T |
42757180 |
aaaatcataaattatcagcaactcattctattaattatattgtcaatgataaaacacactcttcttagtttttcttctt |
42757102 |
T |
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Target: scaffold1293 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: scaffold1293
Description:
Target: scaffold1293; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 228 - 306
Target Start/End: Complemental strand, 1075 - 997
Alignment:
| Q |
228 |
aaaatcataaattatcagcaactcattctattaattatattgtcaattataaaacacactctccttagtttttcttctt |
306 |
Q |
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| T |
1075 |
aaaatcataaattatcagcaactcattttattaattatattgtcaatgataaaacacactcttcttagtttttcttctt |
997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 232 - 306
Target Start/End: Original strand, 6466646 - 6466720
Alignment:
| Q |
232 |
tcataaattatcagcaactcattctattaattatattgtcaattataaaacacactctccttagtttttcttctt |
306 |
Q |
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|||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||| |
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| T |
6466646 |
tcataaattatctgcaactcattctattaattatattgtcacatataaaacacaccctccttaatttttcttctt |
6466720 |
T |
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Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 134 - 183
Target Start/End: Complemental strand, 25642702 - 25642653
Alignment:
| Q |
134 |
tgattttgcacatggcaatagaatgggcggagaatcaatttacggagaga |
183 |
Q |
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| T |
25642702 |
tgattttacacatggcaatggaatgggcggagaatcaatttacggagaga |
25642653 |
T |
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