View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20758_high_36 (Length: 267)
Name: NF20758_high_36
Description: NF20758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20758_high_36 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 8 - 267
Target Start/End: Complemental strand, 33520407 - 33520150
Alignment:
| Q |
8 |
cgaagaatatcctgcaacaaattttgagcagtcatccatgatatattaaccaattcataactccagcccaaatttacataccaaaaaactaccttcaaat |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33520407 |
cgaagaatatcctgcaacaaattttgagcagtcatccatgatatattaaccaattcataactccagcccaaatttacataccaaaaaactaccttcaaat |
33520308 |
T |
|
| Q |
108 |
agtcactcctttctttatctcttaattcatattgaagtgtttgatatcacacaagtgatcaagcaaaaacatatnnnnnnnnntaatgagatcatataat |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
33520307 |
agtcactcctttctttatctcttaattcatattgaagtgtttgatatcacacaagtgatcaagcaaaaacatataaaaaaaa--aatgagatcatataat |
33520210 |
T |
|
| Q |
208 |
gttattgagtattcacgcaccattttctgtaatatacatgggcatgttatgatattttat |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33520209 |
gttattgagtattcacgcaccattttctgtaatatacatgggcatgttatgatattttat |
33520150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 8 - 267
Target Start/End: Original strand, 33495647 - 33495905
Alignment:
| Q |
8 |
cgaagaatatcctgcaacaaattttgagcagtcatccatgatatattaaccaattcataactccag-cccaaatttacataccaaaaaactaccttcaaa |
106 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||||| ||||||||||||||||| | |||| |||||||||||||| |||||||| ||||||||| |
|
|
| T |
33495647 |
cgaagaatatcctgcaacaaattttgtatagccatccatcatatattaaccaattcaaacttccatacccaaatttacataacaaaaaaccaccttcaaa |
33495746 |
T |
|
| Q |
107 |
tagtcactcctttctttatctcttaattcatattgaagtgtttgatatcacacaagtgatcaagcaaaaacatatnnnnnnnnntaatgagatcatataa |
206 |
Q |
| |
|
|||||||||||||||| |||| |||| |||||| ||||||||||||| | |||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
33495747 |
gagtcactcctttctttgtctcataatgcatattaaagtgtttgatattaaacaagtgatcaagcaaaaacatataaaaagaa--aatgagatcatataa |
33495844 |
T |
|
| Q |
207 |
tgttattgagtattcacgcaccattttctgtaatatacatgggcatgttatgatattttat |
267 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||| ||| || |||||||| |
|
|
| T |
33495845 |
tgttattgagtattcacacaccattttctgtaatatacatgggcaggttttggtattttat |
33495905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University