View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20758_high_37 (Length: 262)
Name: NF20758_high_37
Description: NF20758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20758_high_37 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 17 - 254
Target Start/End: Complemental strand, 170547 - 170310
Alignment:
| Q |
17 |
atttcaaaattgaaaaagaacttgatttccgtaagtagtctacacgaaaacgactacctcaaggatatgagtgctagaaaattatgactctctcataaaa |
116 |
Q |
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| T |
170547 |
atttcaaaattgaaaaagaacttgatttccgtaagtagtctacacgaaaacgactatctcaaggatatgagtgctagaaaattatgactctctcataaaa |
170448 |
T |
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| Q |
117 |
gctacattaaaaaggtgctagagaaagttgatatgagcaattcaaaggttgtgaatacctcattgacaaatcacttaaaactctcatttgattagtgtcc |
216 |
Q |
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| T |
170447 |
gctacattaaaaaggtgctagagaaagttgatatgagcaattcaaaggttgtgaatacctcattgacaaatcacttaaaactctcatttgattagtgtcc |
170348 |
T |
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| Q |
217 |
aaagacagatgaagaagttgggtatatgtcacaggttc |
254 |
Q |
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| T |
170347 |
aaagacagatgaagaagttgggtatatgtcagaggttc |
170310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 76 - 245
Target Start/End: Original strand, 9837658 - 9837827
Alignment:
| Q |
76 |
caaggatatgagtgctagaaaattatgactctctcataaaagctacattaaaaaggtgctagagaaagttgatatgagcaattcaaaggttgtgaatacc |
175 |
Q |
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| T |
9837658 |
caaggacaagagtgctagaaagttatggctttctaaaaaaagctatgttgaataggtgttagaaaaatttgacatgagcaatttgaagactgcgagtact |
9837757 |
T |
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| Q |
176 |
tcattgacaaatcacttaaaactctcatttgattagtgtccaaagacagatgaagaagttgggtatatgt |
245 |
Q |
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| T |
9837758 |
tcattgacaaatcattttaagttctcgtttgattagtgtttaaagacaaatgtagaagttgagtatatgt |
9837827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 185 - 254
Target Start/End: Complemental strand, 33559721 - 33559652
Alignment:
| Q |
185 |
aatcacttaaaactctcatttgattagtgtccaaagacagatgaagaagttgggtatatgtcacaggttc |
254 |
Q |
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| T |
33559721 |
aatcacttgaagctctcattggattagtgtccaaagatagatgcagaagttaagtatatgtcaaaggttc |
33559652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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