View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20758_high_42 (Length: 243)

Name: NF20758_high_42
Description: NF20758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20758_high_42
NF20758_high_42
[»] chr8 (13 HSPs)
chr8 (84-222)||(25489406-25489547)
chr8 (84-222)||(24913747-24913889)
chr8 (84-222)||(25646228-25646369)
chr8 (84-208)||(25603826-25603951)
chr8 (84-181)||(25799543-25799640)
chr8 (84-154)||(25321934-25322004)
chr8 (1-41)||(25694742-25694782)
chr8 (135-222)||(25569127-25569214)
chr8 (1-41)||(24913666-24913706)
chr8 (1-41)||(25489590-25489630)
chr8 (1-41)||(25646412-25646452)
chr8 (84-143)||(25694637-25694699)
chr8 (169-214)||(25321889-25321934)
[»] scaffold0070 (2 HSPs)
scaffold0070 (84-222)||(17790-17930)
scaffold0070 (1-41)||(17709-17749)


Alignment Details
Target: chr8 (Bit Score: 100; Significance: 1e-49; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 84 - 222
Target Start/End: Complemental strand, 25489547 - 25489406
Alignment:
Q  84 ggtgcagtatttggaggaga---gtagtgagagtcttgactcattgtgtaagaatgggaagaaaatatcttctattactgaactttccaatcagtttttg 180  Q
    |||||||| |||||||||||   ||||| || ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||    
T  25489547 ggtgcagtctttggaggagaatagtagtaagggtcttgactcattgtgtaagaataggaagaaaagatcttctattactgaactttctaatcagtttttg 25489448  T
Q  181 gttgaatatttctgtcttttatgtcatatcaggtggtgtcta 222  Q
     |||||||||||||||||||||||||||||||||||||||||    
T  25489447 attgaatatttctgtcttttatgtcatatcaggtggtgtcta 25489406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 84 - 222
Target Start/End: Original strand, 24913747 - 24913889
Alignment:
Q  84 ggtgcagtatttggaggagagtagtgagagtcttga----ctcattgtgtaagaatgggaagaaaatatcttctattactgaactttccaatcagttttt 179  Q
    |||||||| ||||||||| ||||||||| |||||||    |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  24913747 ggtgcagtctttggaggaaagtagtgagcgtcttgattgactcattgtgtaagaatgggaagaaaagatcttctattactgaactttctaatcagttttt 24913846  T
Q  180 ggttgaatatttctgtcttttatgtcatatcaggtggtgtcta 222  Q
    ||||||||||||||||||||||||| ||| |||||||||||||    
T  24913847 ggttgaatatttctgtcttttatgttatagcaggtggtgtcta 24913889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 84 - 222
Target Start/End: Complemental strand, 25646369 - 25646228
Alignment:
Q  84 ggtgcagtatttggaggaga---gtagtgagagtcttgactcattgtgtaagaatgggaagaaaatatcttctattactgaactttccaatcagtttttg 180  Q
    |||||||| |||||||||||   ||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||     
T  25646369 ggtgcagtctttggaggagaatagtagtaagggtcttgactcattgtgtaagaatgggaagaaaagatcttctattactgaaccttctaatcagttttta 25646270  T
Q  181 gttgaatatttctgtcttttatgtcatatcaggtggtgtcta 222  Q
    |||||||||||||||||||||||| ||| |||||||||||||    
T  25646269 gttgaatatttctgtcttttatgttatagcaggtggtgtcta 25646228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 84 - 208
Target Start/End: Complemental strand, 25603951 - 25603826
Alignment:
Q  84 ggtgcagtatttggaggagagtagtgagagtcttgactcattgtgtaagaatgggaagaaaatatcttctattactgaactttccaatcagt-ttttggt 182  Q
    |||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||| ||||||||||||||| ||||||| |||||||    
T  25603951 ggtgcagtctttggaggagagtagtgagggtcttgactcattgtgtacgaatgggaagaaaagatcttatattactgaactttctaatcagttttttggt 25603852  T
Q  183 tgaatatttctgtcttttatgtcata 208  Q
    |||||||||||| ||||| |||||||    
T  25603851 tgaatatttctgccttttttgtcata 25603826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 84 - 181
Target Start/End: Complemental strand, 25799640 - 25799543
Alignment:
Q  84 ggtgcagtatttggaggagagtagtgagagtcttgactcattgtgtaagaatgggaagaaaatatcttctattactgaactttccaatcagtttttgg 181  Q
    |||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||||||    
T  25799640 ggtgcagtctttggaggagagtagtgagggtcttgaatcattgtgtaagaatgggaagaaaagatcttctattactgaactttgtaatcagtttttgg 25799543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 84 - 154
Target Start/End: Complemental strand, 25322004 - 25321934
Alignment:
Q  84 ggtgcagtatttggaggagagtagtgagagtcttgactcattgtgtaagaatgggaagaaaatatcttcta 154  Q
    |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  25322004 ggtgcagtctttggaggagagtagtgagggtcttgactcattgtgtaagaatgggaagaaaagatcttcta 25321934  T

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Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 25694782 - 25694742
Alignment:
Q  1 aaatcgtgtgtactgtatccatttatgttgtatcccctctc 41  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  25694782 aaatcgtgtgtactgtatccatttatgttgtatcccctctc 25694742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 135 - 222
Target Start/End: Complemental strand, 25569214 - 25569127
Alignment:
Q  135 tgggaagaaaatatcttctattactgaactttccaatcagtttttggttgaatatttctgtcttttatgtcatatcaggtggtgtcta 222  Q
    ||||| ||||| ||||||||||||||||||| | ||||| ||||| |||| |||||| | |||| | ||||||| |||||||||||||    
T  25569214 tgggatgaaaagatcttctattactgaacttgctaatcatttttttgttgcatatttatttcttctctgtcataccaggtggtgtcta 25569127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 24913666 - 24913706
Alignment:
Q  1 aaatcgtgtgtactgtatccatttatgttgtatcccctctc 41  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  24913666 aaatcgtgtgtactctatccatttatgttgtatcccctctc 24913706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 25489630 - 25489590
Alignment:
Q  1 aaatcgtgtgtactgtatccatttatgttgtatcccctctc 41  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  25489630 aaatcgtgtgtattgtatccatttatgttgtatcccctctc 25489590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 25646452 - 25646412
Alignment:
Q  1 aaatcgtgtgtactgtatccatttatgttgtatcccctctc 41  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  25646452 aaatcgtgtgtactatatccatttatgttgtatcccctctc 25646412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 84 - 143
Target Start/End: Complemental strand, 25694699 - 25694637
Alignment:
Q  84 ggtgcagtatttggaggaga---gtagtgagagtcttgactcattgtgtaagaatgggaagaa 143  Q
    |||||||| |||||||||||   ||||| || |||||||||||||||||||||||||||||||    
T  25694699 ggtgcagtctttggaggagaatagtagtaagggtcttgactcattgtgtaagaatgggaagaa 25694637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 214
Target Start/End: Complemental strand, 25321934 - 25321889
Alignment:
Q  169 aatcagtttttggttgaatatttctgtcttttatgtcatatcaggt 214  Q
    ||||||||||||||||||||| |||| ||||||||||||| |||||    
T  25321934 aatcagtttttggttgaatatatctgccttttatgtcatagcaggt 25321889  T

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Target: scaffold0070 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 84 - 222
Target Start/End: Original strand, 17790 - 17930
Alignment:
Q  84 ggtgcagtatttggaggagagtagtgagagtcttga----ctcattgtgtaagaatgggaagaaaatatcttctattactgaactttccaatcagttttt 179  Q
    ||||||||  |||||||| ||||||||| |||||||    |||||||||||||||||||||||||| ||  ||||||||||||||||| |||||||||||    
T  17790 ggtgcagtccttggaggaaagtagtgagggtcttgattgactcattgtgtaagaatgggaagaaaagat--tctattactgaactttctaatcagttttt 17887  T
Q  180 ggttgaatatttctgtcttttatgtcatatcaggtggtgtcta 222  Q
    |||| | ||||| |||||||||||| ||| |||||||||||||    
T  17888 ggttaattatttttgtcttttatgttatagcaggtggtgtcta 17930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 17709 - 17749
Alignment:
Q  1 aaatcgtgtgtactgtatccatttatgttgtatcccctctc 41  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  17709 aaatcgtgtgtactgtatccatttatgttgtatcccctctc 17749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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