View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20758_high_48 (Length: 236)
Name: NF20758_high_48
Description: NF20758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20758_high_48 |
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| [»] scaffold0025 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 45410596 - 45410814
Alignment:
| Q |
1 |
ataacttggcgaaaccttaaaagtgaagttagagagaagtattgttaacactatcttgtactccataaatgtcaagtttctaccaacacacattctccct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45410596 |
ataacttggcgaaaccttaaaagtgaagttagagagaagtattgttaacactatcttgtactccataaatgtcaagtttctaccaacacacattctccct |
45410695 |
T |
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| Q |
101 |
ccaaatccaaaaggtaaataccccatcttgtgtttgcatccaccattaacatcatccatgaacctctctggtttgaaatcattcccatcatctccccata |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |
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| T |
45410696 |
ccaaatccaaaaggtaaataccccatcttgtgtttgcatccaccattaacatcatccatgaacctctctggtttgaactcattcacatcatctccccata |
45410795 |
T |
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| Q |
201 |
attctgggtcacggtgcat |
219 |
Q |
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||||||||||| ||||||| |
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| T |
45410796 |
attctgggtcatggtgcat |
45410814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 2 - 219
Target Start/End: Original strand, 45419906 - 45420123
Alignment:
| Q |
2 |
taacttggcgaaaccttaaaagtgaagttagagagaagtattgttaacactatcttgtactccataaatgtcaagtttctaccaacacacattctccctc |
101 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45419906 |
taacctggcgaaaccttaaaagtgaagttagagagaagtattgttaacactatcttgtactccataaatgtcaagtttctaccaacacacattctccctc |
45420005 |
T |
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| Q |
102 |
caaatccaaaaggtaaataccccatcttgtgtttgcatccaccattaacatcatccatgaacctctctggtttgaaatcattcccatcatctccccataa |
201 |
Q |
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| T |
45420006 |
caaatccaaaaggtaaataccccatcttgtgtttgcatccaccattaacatcatccatgaacctctctggtttgaaatcattcacatcatctccccataa |
45420105 |
T |
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| Q |
202 |
ttctgggtcacggtgcat |
219 |
Q |
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| T |
45420106 |
ttctgggtcatggtgcat |
45420123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 30 - 172
Target Start/End: Original strand, 29799689 - 29799831
Alignment:
| Q |
30 |
tagagagaagtattgttaacactatcttgtactccataaatgtcaagtttctaccaacacacattctccctccaaatccaaaaggtaaataccccatctt |
129 |
Q |
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|||||||||| | |||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| || ||||| || |
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| T |
29799689 |
tagagagaagaagggttaacactatcttatactccataaagctcaagtttctaccaacacacattcttcctccaaatccaaaaggtaagtatcccatttt |
29799788 |
T |
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| Q |
130 |
gtgtttgcatccaccattaacatcatccatgaacctctctggt |
172 |
Q |
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| T |
29799789 |
ttggttgcatccaccatttacatcatccatgaatctttctggt |
29799831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 2 - 221
Target Start/End: Original strand, 26835097 - 26835316
Alignment:
| Q |
2 |
taacttggcgaaaccttaaaagtgaagttagagagaagtattgttaacactatcttgtactccataaatgtcaagtttctaccaacacacattctccctc |
101 |
Q |
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|||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26835097 |
taacctggcgaaaccttaaaagtgaagttagagagaagcattgttaatactatcttgtactccataaatgtcaagtttctaccaacacacattctccctc |
26835196 |
T |
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| Q |
102 |
caaatccaaaaggtaaataccccatcttgtgtttgcatccaccattaacatcatccatgaacctctctggtttgaaatcattcccatcatctccccataa |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||| |||||||||||||||| |
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| T |
26835197 |
caaatccaaaaggtaaataccccatcttgtgtttgcatccaccattaacatcatcgacgaacctctctggtttgaactcattcacatcatctccccataa |
26835296 |
T |
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| Q |
202 |
ttctgggtcacggtgcattg |
221 |
Q |
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||| |||||| ||||||||| |
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| T |
26835297 |
ttcagggtcatggtgcattg |
26835316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0025 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0025
Description:
Target: scaffold0025; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 35 - 174
Target Start/End: Original strand, 63457 - 63596
Alignment:
| Q |
35 |
agaagtattgttaacactatcttgtactccataaatgtcaagtttctaccaacacacattctccctccaaatccaaaaggtaaataccccatcttgtgtt |
134 |
Q |
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||||||| ||||||||||| || |||||||| || ||||||| ||||||| ||| |||||||||||| |||||||| || |||||||| |||| | |
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| T |
63457 |
agaagtagggttaacactatgttatactccatgaagatcaagttcctaccaatacatgctctccctccaaaaccaaaaggcaagtaccccattgtgtggt |
63556 |
T |
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| Q |
135 |
tgcatccaccattaacatcatccatgaacctctctggttt |
174 |
Q |
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|||| | ||||| |||||| |||||||||||||||||| |
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| T |
63557 |
ggcattccccattggcatcattcatgaacctctctggttt |
63596 |
T |
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