View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20758_high_5 (Length: 598)

Name: NF20758_high_5
Description: NF20758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20758_high_5
NF20758_high_5
[»] chr3 (7 HSPs)
chr3 (18-583)||(49406145-49406708)
chr3 (21-104)||(48886120-48886203)
chr3 (18-103)||(12975523-12975608)
chr3 (21-106)||(31169563-31169648)
chr3 (24-103)||(51305152-51305231)
chr3 (22-101)||(36177884-36177963)
chr3 (51-103)||(37182466-37182518)
[»] chr1 (2 HSPs)
chr1 (108-577)||(52269848-52270311)
chr1 (10-103)||(45364164-45364257)
[»] chr7 (6 HSPs)
chr7 (18-107)||(12117044-12117133)
chr7 (21-101)||(38970743-38970823)
chr7 (21-108)||(45548787-45548874)
chr7 (21-95)||(20354882-20354956)
chr7 (51-105)||(30720747-30720801)
chr7 (21-103)||(38352307-38352389)
[»] chr4 (9 HSPs)
chr4 (18-103)||(53346987-53347072)
chr4 (21-105)||(33524077-33524161)
chr4 (18-106)||(17329205-17329293)
chr4 (21-105)||(19273502-19273586)
chr4 (18-85)||(33609652-33609719)
chr4 (21-107)||(13093567-13093653)
chr4 (21-105)||(35809980-35810064)
chr4 (35-105)||(16021456-16021526)
chr4 (21-101)||(16171192-16171271)
[»] chr5 (4 HSPs)
chr5 (18-102)||(4938779-4938863)
chr5 (21-103)||(32362751-32362833)
chr5 (21-103)||(39239134-39239216)
chr5 (21-106)||(13478988-13479073)
[»] chr8 (5 HSPs)
chr8 (18-107)||(30528939-30529028)
chr8 (21-103)||(44503966-44504048)
chr8 (21-106)||(40284194-40284279)
chr8 (21-105)||(26245217-26245301)
chr8 (21-108)||(23550443-23550530)
[»] chr2 (3 HSPs)
chr2 (18-103)||(5144663-5144748)
chr2 (18-100)||(13150908-13150990)
chr2 (21-106)||(7762478-7762563)
[»] chr6 (2 HSPs)
chr6 (25-105)||(26653554-26653634)
chr6 (25-105)||(26759522-26759602)
[»] scaffold0016 (1 HSPs)
scaffold0016 (21-103)||(65713-65795)
[»] scaffold1905 (1 HSPs)
scaffold1905 (21-93)||(735-807)


Alignment Details
Target: chr3 (Bit Score: 496; Significance: 0; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 18 - 583
Target Start/End: Complemental strand, 49406708 - 49406145
Alignment:
Q  18 ctttcctcttctctcattttcaataccccactccaatggtttcaatatgttgaaaatggcattcaataggccattgtaaatggtctt--atgacaccatt 115  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  49406708 ctttcctcttctctcattttcaataccccgctccaatggtttcaatatgttgaaaatggcattcaataggccattgtaaatggtcttttatgacaccatt 49406609  T
Q  116 gatgatgaaataagaaaaagaaaggaaaatcaaaagtctagccaacacttgcatattttgctttgctcgtattgaaaccttgcctcctttcttccctaaa 215  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  49406608 gatgatgaaataagaaaaagaaagggaaatcaaaagtctagccaacacttgcatattttgctttgctcgtattgaaaccctgcctcctttcttccctaaa 49406509  T
Q  216 agattagatcccacaatacagaacatgaaggaaattgcaagaatttttcatcacacgaagcataacggccaaataccaacaggatgtagtccacaccagt 315  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49406508 agattagatcccacaatatagaacatgaaggaaattgcaagaatttttcatcacacgaagcataacggccaaataccaacaggatgtagtccacaccagt 49406409  T
Q  316 acttggttcatcatgaatctaaaattattatttaaatctatgcaattgaatatcaaacagagtaagatacttttgactgagatatatcacacatctttgc 415  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||    
T  49406408 acttggttcatcatgaatctaaaattattatttaaatctatgcaattgaatatcaaacagagtaagatacttt----tgagatatatcacacatctttgc 49406313  T
Q  416 acatttggggaaaatggttaaagaggtttaagttcctgctcagcgctcacaaaggcgttatgtgatttgcaatgcagcggctcttatatactagcattct 515  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  49406312 acatttgggggaaatggttaaagaggtttaagttcctgctcagcgctcacaaaggcgttatgtgatttgcaatgcagcggctctcatatacaagcattct 49406213  T
Q  516 cataccgtgatcacggggtgtttttgcataattttcttgatggattatgggttccaatggcttctgtg 583  Q
    |||||||||  ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  49406212 cataccgtggccacggggtgtttttgcataatgttcttgacggattatgggttccaatggcttctgtg 49406145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 21 - 104
Target Start/End: Complemental strand, 48886203 - 48886120
Alignment:
Q  21 tcctcttctctcattttcaataccccactccaatggtttcaatatgttgaaaatggcattcaataggccattgtaaatggtctt 104  Q
    ||||||||||| |||||||||| ||| |||||||| |||||||| |||||||||||||||||||| ||||||||| ||||||||    
T  48886203 tcctcttctctaattttcaataaccctctccaatgatttcaataggttgaaaatggcattcaataagccattgtagatggtctt 48886120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 12975523 - 12975608
Alignment:
Q  18 ctttcctcttctctcattttcaataccccactccaatggtttcaatatgttgaaaatggcattcaataggccattgtaaatggtct 103  Q
    ||||||||||| |||||||||||||  ||||||||||  |||||||| ||||||||| |||||||||| ||||||||| |||||||    
T  12975523 ctttcctcttcgctcattttcaataagccactccaataatttcaataggttgaaaatagcattcaataagccattgtagatggtct 12975608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 21 - 106
Target Start/End: Complemental strand, 31169648 - 31169563
Alignment:
Q  21 tcctcttctctcattttcaataccccactccaatggtttcaatatgttgaaaatggcattcaataggccattgtaaatggtcttat 106  Q
    |||||||||||||||||||||| ||| |||||||| ||||||  | ||||||||||||||||| | ||||||||| ||||||||||    
T  31169648 tcctcttctctcattttcaataaccctctccaatgatttcaacctattgaaaatggcattcaacaagccattgtagatggtcttat 31169563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 24 - 103
Target Start/End: Original strand, 51305152 - 51305231
Alignment:
Q  24 tcttctctcattttcaataccccactccaatggtttcaatatgttgaaaatggcattcaataggccattgtaaatggtct 103  Q
    ||||| ||||| ||||||| ||  |||||||||| |||| |||||||| ||||||||||| | |||||||||||||||||    
T  51305152 tcttccctcatattcaatagcctcctccaatggtctcaacatgttgaatatggcattcaacaagccattgtaaatggtct 51305231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 22 - 101
Target Start/End: Complemental strand, 36177963 - 36177884
Alignment:
Q  22 cctcttctctcattttcaataccccactccaatggtttcaatatgttgaaaatggcattcaataggccattgtaaatggt 101  Q
    ||||||| ||||| ||||||| ||  ||||||| || |||| |||||||| ||||||||||| | |||||||||||||||    
T  36177963 cctcttccctcatattcaatagccttctccaatagtctcaacatgttgaatatggcattcaacaagccattgtaaatggt 36177884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 51 - 103
Target Start/End: Complemental strand, 37182518 - 37182466
Alignment:
Q  51 caatggtttcaatatgttgaaaatggcattcaataggccattgtaaatggtct 103  Q
    ||||||| |||| |||||||| ||||||||||| | |||||||||| ||||||    
T  37182518 caatggtctcaacatgttgaatatggcattcaacaagccattgtaagtggtct 37182466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 108 - 577
Target Start/End: Original strand, 52269848 - 52270311
Alignment:
Q  108 acaccattgatgatgaaataagaaaaa--gaaaggaaaatcaaaagtctagccaacacttgcatattttgctttgctcgtattgaaaccttgcctccttt 205  Q
    ||||| || |||||||||| | |||||  |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||    
T  52269848 acaccgttaatgatgaaatcaaaaaaaaggaaagggaaatcaaaagtctagccaacacctgcatattttgctttgctcgtattgaaaccttgtctccttt 52269947  T
Q  206 cttccctaaaagattagatcccacaatacagaacatgaaggaaattgcaagaa-tttttcatcacacgaagcataacggccaaataccaacaggatgtag 304  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||| ||||    
T  52269948 cttccctaaaaggttagatcccacaatacaaaacatgaaggaaattgcaagaattttttcatcacaggaagcataacggccaaataccaataggaagtag 52270047  T
Q  305 tcc---acaccagtacttggt---tcatcatgaatctaaaattattatttaaatctatgcaattgaatatcaaacagagtaagatacttt-tgactgaga 397  Q
    |||   |||||| ||||||||   |||||||||||||||||||||||||||||| | || ||||||||| ||| ||||||||||||||||  |  |||||    
T  52270048 tccactacaccactacttggttcatcatcatgaatctaaaattattatttaaatttgtgtaattgaataccaagcagagtaagatactttgagtttgaga 52270147  T
Q  398 tatatcacacatctttgcacatttggggaaaatggttaaagaggtttaagttcctgctcagcgctcacaaaggcgttatgtgatttgcaatgcagcggct 497  Q
     |||| ||           |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||   ||| |      
T  52270148 aatatgac-----------catttggggaaaatggctaaagaggtttaagttcctgctcagtgctcacaaaggcgttatgtgatttgcaacatagcag-- 52270234  T
Q  498 cttatatactagcattctcataccgtgatcacggggtgtttttgcataattttcttgatggattatgggttccaatggct 577  Q
       ||||||||| ||||||||||| ||  |||| |||||||||||||||| |||  ||||||||||||||||||||||||    
T  52270235 ---atatactagaattctcataccatggccacgtggtgtttttgcataatgttcaggatggattatgggttccaatggct 52270311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 10 - 103
Target Start/End: Original strand, 45364164 - 45364257
Alignment:
Q  10 catcatcactttcctcttctctcattttcaataccccactccaatggtttcaatatgttgaaaatggcattcaataggccattgtaaatggtct 103  Q
    ||||||| || |||||||| ||||||||||||||||  |||||||| |||||| || ||||||||| ||||||| | |||||||||||||||||    
T  45364164 catcatctctctcctcttccctcattttcaatacccttctccaatgatttcaacatattgaaaatgacattcaacaagccattgtaaatggtct 45364257  T

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Target: chr7 (Bit Score: 82; Significance: 2e-38; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 18 - 107
Target Start/End: Original strand, 12117044 - 12117133
Alignment:
Q  18 ctttcctcttctctcattttcaataccccactccaatggtttcaatatgttgaaaatggcattcaataggccattgtaaatggtcttatg 107  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  12117044 ctttcctcttctctcattttcaataccccactacaatggtttcaatatgttgaaaatggccttcaataggccattgtaaatggtcttatg 12117133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 21 - 101
Target Start/End: Original strand, 38970743 - 38970823
Alignment:
Q  21 tcctcttctctcattttcaataccccactccaatggtttcaatatgttgaaaatggcattcaataggccattgtaaatggt 101  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  38970743 tcctcttctctcattttcaataccccactccaatagtttcaatatgttgaaaatggcattcaataggccattgtaaatggt 38970823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 21 - 108
Target Start/End: Complemental strand, 45548874 - 45548787
Alignment:
Q  21 tcctcttctctcattttcaataccccactccaatggtttcaatatgttgaaaatggcattcaataggccattgtaaatggtcttatga 108  Q
    |||||||| ||||| |||||||  |  ||||||| || |||| |||||||| |||| |||||| | ||||||||||||||||||||||    
T  45548874 tcctcttccctcatattcaatagtctcctccaatagtctcaacatgttgaatatggtattcaacaagccattgtaaatggtcttatga 45548787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 21 - 95
Target Start/End: Original strand, 20354882 - 20354956
Alignment:
Q  21 tcctcttctctcattttcaataccccactccaatggtttcaatatgttgaaaatggcattcaataggccattgta 95  Q
    |||||||  ||||||||||||||||  |||||||  |||||| || |||||||| || ||||||| |||||||||    
T  20354882 tcctctttcctcattttcaatacccttctccaatcatttcaacatattgaaaattgctttcaataagccattgta 20354956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 51 - 105
Target Start/End: Original strand, 30720747 - 30720801
Alignment:
Q  51 caatggtttcaatatgttgaaaatggcattcaataggccattgtaaatggtctta 105  Q
    ||||||| |||| |||||||| ||||||||||| | |||||||||| ||||||||    
T  30720747 caatggtctcaacatgttgaatatggcattcaacaagccattgtaagtggtctta 30720801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 21 - 103
Target Start/End: Original strand, 38352307 - 38352389
Alignment:
Q  21 tcctcttctctcattttcaataccccactccaatggtttcaatatgttgaaaatggcattcaataggccattgtaaatggtct 103  Q
    |||||||| ||||||||||||||||  |||||||  |||||| || |||||||| || ||||| | ||||||| | |||||||    
T  38352307 tcctcttccctcattttcaatacccttctccaatcatttcaaaatattgaaaattgctttcaacaagccattggagatggtct 38352389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 1e-33; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 53347072 - 53346987
Alignment:
Q  18 ctttcctcttctctcattttcaataccccactccaatggtttcaatatgttgaaaatggcattcaataggccattgtaaatggtct 103  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  53347072 ctttccttttctctcattttcaatacccctctccaatggtttcaatatattgaaaatggcattcaataggccattgtaaatggtct 53346987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 21 - 105
Target Start/End: Original strand, 33524077 - 33524161
Alignment:
Q  21 tcctcttctctcattttcaataccccactccaatggtttcaatatgttgaaaatggcattcaataggccattgtaaatggtctta 105  Q
    |||||||||||||||||||||| ||| ||| |||| |||||||| |||||||||||||||||||| ||||||||| |||||||||    
T  33524077 tcctcttctctcattttcaataaccctctcaaatgatttcaataggttgaaaatggcattcaataagccattgtagatggtctta 33524161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 17329293 - 17329205
Alignment:
Q  18 ctttcctcttctctcattttcaataccccactccaatggtttcaatatgttgaaaatggcattcaataggccattgtaaatggtcttat 106  Q
    |||||||||||||||||||||||||   ||||||||||||||||| |||||||||||    ||||||||||||||||| ||||||||||    
T  17329293 ctttcctcttctctcattttcaatagggcactccaatggtttcaacatgttgaaaatcattttcaataggccattgtagatggtcttat 17329205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 105
Target Start/End: Original strand, 19273502 - 19273586
Alignment:
Q  21 tcctcttctctcattttcaataccccactccaatggtttcaatatgttgaaaatggcattcaataggccattgtaaatggtctta 105  Q
    |||||||| ||||| ||||||| ||  |||||||||| |||| |||||||| ||||||||||| | |||||||||||||||||||    
T  19273502 tcctcttccctcatattcaatagcctcctccaatggtctcaacatgttgaatatggcattcaacaagccattgtaaatggtctta 19273586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 33609652 - 33609719
Alignment:
Q  18 ctttcctcttctctcattttcaataccccactccaatggtttcaatatgttgaaaatggcattcaata 85  Q
    |||||||||||||||||||||||||   |||||||||| |||||||| |||||||||| |||||||||    
T  33609652 ctttcctcttctctcattttcaataagtcactccaatgatttcaataggttgaaaatgacattcaata 33609719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 21 - 107
Target Start/End: Complemental strand, 13093653 - 13093567
Alignment:
Q  21 tcctcttctctcattttcaataccccactccaatggtttcaatatgttgaaaatggcattcaataggccattgtaaatggtcttatg 107  Q
    |||||||| ||||| |||| || ||  |||||||||| |||| |||||||| ||||||||||| | |||||||||||||||||||||    
T  13093653 tcctcttccctcatattcattagcctcctccaatggtctcaacatgttgaatatggcattcaacaagccattgtaaatggtcttatg 13093567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 21 - 105
Target Start/End: Original strand, 35809980 - 35810064
Alignment:
Q  21 tcctcttctctcattttcaataccccactccaatggtttcaatatgttgaaaatggcattcaataggccattgtaaatggtctta 105  Q
    |||||||| ||||| |||| || ||  |||||||||| |||| |||||||| ||||||||||| | |||||||||||||||||||    
T  35809980 tcctcttccctcatattcagtagcctcctccaatggtctcaacatgttgaatatggcattcaacaagccattgtaaatggtctta 35810064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 35 - 105
Target Start/End: Original strand, 16021456 - 16021526
Alignment:
Q  35 tttcaataccccactccaatggtttcaatatgttgaaaatggcattcaataggccattgtaaatggtctta 105  Q
    |||||| ||||| || ||||||| |||| |||||||| ||||||||||| | |||||||||| ||||||||    
T  16021456 tttcaacacccccctacaatggtctcaacatgttgaatatggcattcaacaagccattgtaagtggtctta 16021526  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 21 - 101
Target Start/End: Complemental strand, 16171271 - 16171192
Alignment:
Q  21 tcctcttctctcattttcaataccccactccaatggtttcaatatgttgaaaatggcattcaataggccattgtaaatggt 101  Q
    |||||||| || || ||||||| ||  ||||||||| | ||| |||||||| ||||||||||| | |||||||||||||||    
T  16171271 tcctcttcccttatattcaatagccttctccaatggct-caacatgttgaatatggcattcaacaagccattgtaaatggt 16171192  T

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Target: chr5 (Bit Score: 73; Significance: 5e-33; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 4938779 - 4938863
Alignment:
Q  18 ctttcctcttctctcattttcaataccccactccaatggtttcaatatgttgaaaatggcattcaataggccattgtaaatggtc 102  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  4938779 ctttcctcttctctcattttcaataccccactacaatggtttcaatatgttcaaaatgacattcaataggccattgtaaatggtc 4938863  T

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Target: chr5; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 21 - 103
Target Start/End: Complemental strand, 32362833 - 32362751
Alignment:
Q  21 tcctcttctctcattttcaataccccactccaatggtttcaatatgttgaaaatggcattcaataggccattgtaaatggtct 103  Q
    |||||||||||||||||||||| ||| |||||||| |||||| | |||||||||| ||||||||| ||||||||| |||||||    
T  32362833 tcctcttctctcattttcaataaccctctccaatgatttcaacaggttgaaaatgacattcaataagccattgtagatggtct 32362751  T

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Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 21 - 103
Target Start/End: Original strand, 39239134 - 39239216
Alignment:
Q  21 tcctcttctctcattttcaataccccactccaatggtttcaatatgttgaaaatggcattcaataggccattgtaaatggtct 103  Q
    |||||||| ||||| ||||||| ||  |||||||||| |||| |||||||| ||||||||||| | |||||||||||||||||    
T  39239134 tcctcttccctcatattcaatagcctcctccaatggtctcaacatgttgaatatggcattcaacaagccattgtaaatggtct 39239216  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 21 - 106
Target Start/End: Complemental strand, 13479073 - 13478988
Alignment:
Q  21 tcctcttctctcattttcaataccccactccaatggtttcaatatgttgaaaatggcattcaataggccattgtaaatggtcttat 106  Q
    |||||||| ||||| ||||| | ||  ||| |||||| |||| |||||||| ||| ||||||| | ||||||||||||||||||||    
T  13479073 tcctcttccctcatattcaacagcctcctcaaatggtctcaacatgttgaatatgacattcaacaagccattgtaaatggtcttat 13478988  T

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Target: chr8 (Bit Score: 70; Significance: 3e-31; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 18 - 107
Target Start/End: Complemental strand, 30529028 - 30528939
Alignment:
Q  18 ctttcctcttctctcattttcaataccccactccaatggtttcaatatgttgaaaatggcattcaataggccattgtaaatggtcttatg 107  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||  ||||||||| |||||||||||||||||||||    
T  30529028 ctttcctcttctctcattttcaatacccctctccaatggtttcaatatattgaaaataacattcaatatgccattgtaaatggtcttatg 30528939  T

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Target: chr8; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 21 - 103
Target Start/End: Original strand, 44503966 - 44504048
Alignment:
Q  21 tcctcttctctcattttcaataccccactccaatggtttcaatatgttgaaaatggcattcaataggccattgtaaatggtct 103  Q
    |||||||||||||||||||||| ||| |||||||| ||||||  || |||||||||||||||||| ||||||||| |||||||    
T  44503966 tcctcttctctcattttcaataaccctctccaatgatttcaacctgatgaaaatggcattcaataagccattgtagatggtct 44504048  T

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Target: chr8; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 21 - 106
Target Start/End: Original strand, 40284194 - 40284279
Alignment:
Q  21 tcctcttctctcattttcaataccccactccaatggtttcaatatgttgaaaatggcattcaataggccattgtaaatggtcttat 106  Q
    |||||||| ||||| ||||||| ||  |||||||||| |||| |||||||| ||||||||||| | ||||||||||||||||||||    
T  40284194 tcctcttccctcatattcaatagcctcctccaatggtctcaacatgttgaatatggcattcaacaagccattgtaaatggtcttat 40284279  T

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Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 105
Target Start/End: Original strand, 26245217 - 26245301
Alignment:
Q  21 tcctcttctctcattttcaataccccactccaatggtttcaatatgttgaaaatggcattcaataggccattgtaaatggtctta 105  Q
    |||||||| ||||| ||||||| ||  |||||||||| |||| |||||||| ||||||||||| | |||||||||||||||||||    
T  26245217 tcctcttccctcatattcaatagcctcctccaatggtctcaacatgttgaatatggcattcaacaagccattgtaaatggtctta 26245301  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 108
Target Start/End: Original strand, 23550443 - 23550530
Alignment:
Q  21 tcctcttctctcattttcaataccccactccaatggtttcaatatgttgaaaatggcattcaataggccattgtaaatggtcttatga 108  Q
    |||||||  ||||||||||||||||  |||||||  |||||| || |||||||| || ||||||| ||||||||   |||||||||||    
T  23550443 tcctctttcctcattttcaatacccttctccaatcatttcaacatattgaaaattgctttcaataagccattgtgggtggtcttatga 23550530  T

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Target: chr2 (Bit Score: 66; Significance: 7e-29; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 5144748 - 5144663
Alignment:
Q  18 ctttcctcttctctcattttcaataccccactccaatggtttcaatatgttgaaaatggcattcaataggccattgtaaatggtct 103  Q
    ||||||||||||||||||||||||| ||| ||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||    
T  5144748 ctttcctcttctctcattttcaatatccctctctaatcgtttcaatatattgaaaatggcattcaataggccattgtaaatggtct 5144663  T

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Target: chr2; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 13150990 - 13150908
Alignment:
Q  18 ctttcctcttctctcattttcaataccccactccaatggtttcaatatgttgaaaatggcattcaataggccattgtaaatgg 100  Q
    ||||| ||||||||||||||||||||||||||  |||| ||||||||| |||||||||||||||||||| |||||||| ||||    
T  13150990 ctttcatcttctctcattttcaataccccactataatgatttcaatatattgaaaatggcattcaatagaccattgtatatgg 13150908  T

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Target: chr2; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 21 - 106
Target Start/End: Complemental strand, 7762563 - 7762478
Alignment:
Q  21 tcctcttctctcattttcaataccccactccaatggtttcaatatgttgaaaatggcattcaataggccattgtaaatggtcttat 106  Q
    |||||||| ||||||||||||||||  |||||||| |||||| || ||||||||||||||||| | ||||||||||||||||||||    
T  7762563 tcctcttccctcattttcaatacccttctccaatgatttcaacatattgaaaatggcattcaacaagccattgtaaatggtcttat 7762478  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 25 - 105
Target Start/End: Complemental strand, 26653634 - 26653554
Alignment:
Q  25 cttctctcattttcaataccccactccaatggtttcaatatgttgaaaatggcattcaataggccattgtaaatggtctta 105  Q
    |||| ||||| ||||||| ||  |||||||||| |||| |||||||| ||||||||||| | |||||||||||||||||||    
T  26653634 cttccctcatattcaatagcctcctccaatggtctcaacatgttgaatatggcattcaacaagccattgtaaatggtctta 26653554  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 25 - 105
Target Start/End: Complemental strand, 26759602 - 26759522
Alignment:
Q  25 cttctctcattttcaataccccactccaatggtttcaatatgttgaaaatggcattcaataggccattgtaaatggtctta 105  Q
    |||| ||||| ||||||| ||  |||||||||| |||| |||||||| ||||||||||| | |||||||||||||||||||    
T  26759602 cttccctcatattcaatagcctcctccaatggtctcaacatgttgaatatggcattcaacaagccattgtaaatggtctta 26759522  T

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Target: scaffold0016 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 103
Target Start/End: Complemental strand, 65795 - 65713
Alignment:
Q  21 tcctcttctctcattttcaataccccactccaatggtttcaatatgttgaaaatggcattcaataggccattgtaaatggtct 103  Q
    |||||||| ||||| ||||||| ||  |||||||||| |||| |||||||| ||| ||||||| |  ||||||||||||||||    
T  65795 tcctcttccctcatattcaatagcctcctccaatggtctcaacatgttgaatatgacattcaacaaaccattgtaaatggtct 65713  T

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Target: scaffold1905 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold1905
Description:

Target: scaffold1905; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 21 - 93
Target Start/End: Complemental strand, 807 - 735
Alignment:
Q  21 tcctcttctctcattttcaataccccactccaatggtttcaatatgttgaaaatggcattcaataggccattg 93  Q
    |||||||| ||||||||||||||||  |||||||  |||||| || |||||||| || ||||| | |||||||    
T  807 tcctcttccctcattttcaatacccttctccaatcatttcaacatattgaaaattgctttcaacaagccattg 735  T

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