View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20758_high_6 (Length: 597)
Name: NF20758_high_6
Description: NF20758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20758_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 261 - 581
Target Start/End: Original strand, 42104878 - 42105198
Alignment:
| Q |
261 |
ggttcttcaacaaacaaacnnnnnnntagaaaccctagggttgacatggtggtgaaggaccatatgacattttaatccacattcgcaaggtgtcaacaat |
360 |
Q |
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| T |
42104878 |
ggttcttcaacaaacagacaaaaaaatagaaaccctagggttgacatggtggtgaaggaccatatgacattttaatccacattcgcaaggtgtcaacaat |
42104977 |
T |
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| Q |
361 |
tcatgtgttgtgttgagacagaacatttagggtttctgatggatatatggtccccgatttagttggtcttagcagaatattgaattttcaaacaatnnnn |
460 |
Q |
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| T |
42104978 |
tcatgtgttgtgttgagacagaacatttagggtttctgatggatatatggtccctgatttagttggtcttagcagaatattgaattttcaaacaataaaa |
42105077 |
T |
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| Q |
461 |
nnnnnntgataatagaagttttgatacatacccaatttcttccatttcagccatctatgaagaatggtgtgattttcgaattgcagctgactgatggcgg |
560 |
Q |
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| T |
42105078 |
acaaaatgataatagaagttttgatacatacccaatttcttccatttcagccatctatgaagaatggtgtgattttcgaattgcagctgactgatggcgg |
42105177 |
T |
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| Q |
561 |
cggtagagttgcagttgatga |
581 |
Q |
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| T |
42105178 |
cggtagagttgcagttgatga |
42105198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 15 - 203
Target Start/End: Original strand, 42104634 - 42104820
Alignment:
| Q |
15 |
aaaaccaataaaattcaggaagctaagctacaaacaattattcaaaaatgaaataaatcattgaacnnnnnnnnnnnngacaaacccacagaaaaatctt |
114 |
Q |
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| T |
42104634 |
aaaaccaataaaattcaggaagctaagctacaaacaattattcaaaaatgaaataaatcattgaacaaaaaaaaaa--gacaaacccacagaaaaatctt |
42104731 |
T |
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| Q |
115 |
ttaaaaagacaaataacatagaatcacgaaatatgttacatataaatccnnnnnnnnnnnnctaagttgaagttatggtagactcgtag |
203 |
Q |
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| T |
42104732 |
ttaaaaagacaaataacatagaatcacgaaatatgttacatataaatccaaaaacaaaaaactaagttgaagttatggtagactcgtag |
42104820 |
T |
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