View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20758_low_1 (Length: 1180)

Name: NF20758_low_1
Description: NF20758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20758_low_1
NF20758_low_1
[»] chr8 (8 HSPs)
chr8 (668-1169)||(3429239-3429740)
chr8 (160-671)||(3427967-3428478)
chr8 (17-161)||(3427800-3427944)
chr8 (982-1169)||(3391203-3391386)
chr8 (982-1128)||(3315209-3315355)
chr8 (1056-1170)||(7164327-7164437)
chr8 (971-1127)||(3364509-3364665)
chr8 (1056-1169)||(3286185-3286294)
[»] chr3 (8 HSPs)
chr3 (982-1169)||(6905497-6905680)
chr3 (1060-1168)||(32410763-32410867)
chr3 (123-158)||(20798780-20798815)
chr3 (116-158)||(9450789-9450831)
chr3 (116-158)||(17724638-17724680)
chr3 (116-158)||(19025867-19025909)
chr3 (116-158)||(26640805-26640847)
chr3 (116-158)||(28838401-28838443)
[»] chr5 (8 HSPs)
chr5 (162-304)||(9211459-9211606)
chr5 (162-304)||(9369879-9370026)
chr5 (982-1168)||(15803262-15803444)
chr5 (1081-1168)||(20839079-20839162)
chr5 (123-158)||(19242401-19242436)
chr5 (1081-1169)||(20812724-20812808)
chr5 (116-158)||(9211389-9211431)
chr5 (125-158)||(12560227-12560260)
[»] scaffold0468 (1 HSPs)
scaffold0468 (1065-1128)||(5874-5937)
[»] chr7 (1 HSPs)
chr7 (116-158)||(19545424-19545466)
[»] chr1 (2 HSPs)
chr1 (116-158)||(1466862-1466904)
chr1 (116-158)||(35923325-35923367)


Alignment Details
Target: chr8 (Bit Score: 494; Significance: 0; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 668 - 1169
Target Start/End: Original strand, 3429239 - 3429740
Alignment:
Q  668 ctttgtgtttgtttacatctttgttttccacaatttaggctcaagtctctgtcaagtctaacactccttccatgcttagagcctagaggacccatttaac 767  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3429239 ctttgtgtttgtttacatctttgttttccacaatttaggctcaagtctctgtcaagtctaacactccttccatgcttagagcctagaggacccatttaac 3429338  T
Q  768 tcttgcgtttgaaccacctggaggtttacataagttgaatggtacaatggtgtttcatgtttacaaattaaatgcataattgacacatgagtaacatgaa 867  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3429339 tcttgcgtttgaaccacctggaggtttacataagttgaatggtacaatggtgtttcatgtttacaaattaaatgcataattgacacatgagtaacatgaa 3429438  T
Q  868 acaccgttgcaccattcaacttatgtaacatgaaactccattacaccataagcaggaagtctaacacttcttccaaatttacaaattaaatgcataattt 967  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3429439 acaccgtcgcaccattcaacttatgtaacatgaaactccattacaccataagcaggaagtctaacacttcttccaaatttacaaattaaatgcataattt 3429538  T
Q  968 ggatacactgtcattcagagatgcaactaaagcaagaattaagaaggtttcttcgtggtctatgtgatgcagatcttaatgaattcggaacatcacatgc 1067  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3429539 ggatacactgtcattcagagatgcaactaaagcaagaattaagaaggtttcttcgtggtctatgtgatgcagatcttaatgaattcggaacatcacatgc 3429638  T
Q  1068 atcagaaatgtcgaatcttttcttgagatctcttgtgattggaatgggaagttgccacatatatagtcattgatactcttggcaagagtttatcacaggt 1167  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3429639 atcagaaatgtcgaatcttttcttgagatctcttatgattggaatgggaagttgccacatatatagtcattgatactcttggcaagagtttatcacaggt 3429738  T
Q  1168 tc 1169  Q
    ||    
T  3429739 tc 3429740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 160 - 671
Target Start/End: Original strand, 3427967 - 3428478
Alignment:
Q  160 aggtgcaatggaggtcacacgcctagacgatgggccttcttgatcacaacaccttccaggtaagtatgttgcaatgtgtcacacacttctattttataac 259  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  3427967 aggtgcaatggaggtcacacgcctagacgatgggccttcttgatcacaacacctgccaggtaagtatgctgcaatgtgtcacacacttctattttataac 3428066  T
Q  260 tcatgctccacattattcactacaaatcttccgatgtgggacttatattatgacattctaaacaccattcaagtgtcagcagttcataccctagctcaca 359  Q
    |||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  3428067 tcatgctccacattattcactataaatcttccgatgtgggacttttattattacattctaaacaccattcaagtgtcagcagttcataccctagctcaca 3428166  T
Q  360 catttgctactccattagatccaaatagacagagcatgtttaatcatattgcagttgttgaatccgatattttttgttgaactgataatatgcgttacaa 459  Q
    ||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3428167 catttgccactccattagatccaaatagacaaagtatgtttaatcatattgcagttgttgaatccgatattttttgttgaactgataatatgcgttacaa 3428266  T
Q  460 aggctatgaataaacttggtctcactgatgactaattttgtgtagaaaaacttcaaatgtcttactcaaaaagctcttgcagaaaccaattaaggaatgt 559  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3428267 aggctatgaataaacttggtctcactgatgactaattttgtgtagaaaaacttcaaatgtcttactcaaaaagctcttgcagaaaccaattaaggaatgt 3428366  T
Q  560 ttttgctccttgatctcctaactttccctctattttctatttttctagaacagttatgtatatcatgtaaggaaaccttttctagtgccattactatacc 659  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3428367 ttttgctccttgatctcctaactttccctatattttctatttttctagaacagttatgtatatcatgtaaggaaaccttttctagtgccattactatacc 3428466  T
Q  660 tatttttacttt 671  Q
    ||||||||||||    
T  3428467 tatttttacttt 3428478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 17 - 161
Target Start/End: Original strand, 3427800 - 3427944
Alignment:
Q  17 agtagcttccatcggatatttacccaacctaatcagcccgcaaatttcaaccttcaacaattgcatcaaaaggagaagatgagcacagtatattagcatg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  3427800 agtagcttccatcggatatttacccaacctaatcagcccgcaaatttcaaccttcaacaattgcatcaaaaggagaagatgagcacaatatattagcatg 3427899  T
Q  117 cccctactgcaacaaattatgatgtaagctccaccacttgggcag 161  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||    
T  3427900 cccctactgcaacaaattacgatgtaaactccaccacttgggcag 3427944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 9e-27
Query Start/End: Original strand, 982 - 1169
Target Start/End: Complemental strand, 3391386 - 3391203
Alignment:
Q  982 tcagagatgcaactaaagcaagaattaagaaggtttcttcgtggtctatgtgatgcagatcttaatgaattcggaacatcacatgcatcagaaatgtcga 1081  Q
    |||||||| ||||| || |||||||| ||||| ||||||  || ||||| |||||| | ||||| |||||| |||| ||||||||||||| | || |||     
T  3391386 tcagagattcaactgaaacaagaattcagaagatttcttgatgatctatatgatgccggtcttactgaattgggaatatcacatgcatcacacatttcgg 3391287  T
Q  1082 atcttttcttgagatctcttgtgattggaatgggaagttgccacatatatagtcattgatactcttggcaagagtttatcacaggttc 1169  Q
    ||| || ||||||||||||| ||||||||||||||| |||||||    ||||||||  ||| |||||| ||||| |||||||||||||    
T  3391286 atcattccttgagatctcttttgattggaatgggaaattgccac----atagtcatcaatattcttgggaagagcttatcacaggttc 3391203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 982 - 1128
Target Start/End: Original strand, 3315209 - 3315355
Alignment:
Q  982 tcagagatgcaactaaagcaagaattaagaaggtttcttcgtggtctatgtgatgcagatcttaatgaattcggaacatcacatgcatcagaaatgtcga 1081  Q
    |||||||| ||||| || |||||||| ||||| ||||||  || | ||| |||||||| ||||| |||||| ||||||||||||| |||| |||| | |     
T  3315209 tcagagattcaactgaaacaagaattcagaagatttcttgatgatatatatgatgcaggtcttactgaatttggaacatcacatggatcacaaattttgg 3315308  T
Q  1082 atcttttcttgagatctcttgtgattggaatgggaagttgccacata 1128  Q
    |||||| ||||||||||||| || ||||||| |||||||||||||||    
T  3315309 atctttccttgagatctcttttgtttggaatcggaagttgccacata 3315355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 1056 - 1170
Target Start/End: Complemental strand, 7164437 - 7164327
Alignment:
Q  1056 aacatcacatgcatcagaaatgtcgaatcttttcttgagatctcttgtgattggaatgggaagttgccacatatatagtcattgatactcttggcaagag 1155  Q
    |||||||||| |||||||||| || ||||||| ||||||||| ||| ||||||||||||||||||| ||||||     |||||||||||| |||||||||    
T  7164437 aacatcacattcatcagaaatctcaaatctttccttgagatcacttttgattggaatgggaagttgtcacataa----tcattgatactcgtggcaagag 7164342  T
Q  1156 tttatcacaggttct 1170  Q
      |||| ||||||||    
T  7164341 catatcccaggttct 7164327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 971 - 1127
Target Start/End: Original strand, 3364509 - 3364665
Alignment:
Q  971 tacactgtcattcagagatgcaactaaagcaagaattaagaaggtttcttcgtggtctatgtgatgcagatcttaatgaattcggaacatcacatgcatc 1070  Q
    |||| ||| |||||||||| ||||| |||||||||||  |||| ||||||  || ||||| |||||||| ||||| |||| |  |||||||||||||||     
T  3364509 tacaatgtgattcagagattcaactgaagcaagaattcggaagatttcttgatgatctatatgatgcaggtcttactgaaatgagaacatcacatgcatt 3364608  T
Q  1071 agaaatgtcgaatcttttcttgagatctcttgtgattggaatgggaagttgccacat 1127  Q
    | |||| |||||||||  | ||||||| ||| || |||| || ||||||||||||||    
T  3364609 acaaatttcgaatcttaccatgagatcccttttgtttggtatcggaagttgccacat 3364665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 1056 - 1169
Target Start/End: Complemental strand, 3286294 - 3286185
Alignment:
Q  1056 aacatcacatgcatcagaaatgtcgaatcttttcttgagatctcttgtgattggaatgggaagttgccacatatatagtcattgatactcttggcaagag 1155  Q
    |||||||||||||||| |||| || |||| ||  |||||||| ||| ||||||||||||||| || ||||||||    |||||||  ||||| |||||||    
T  3286294 aacatcacatgcatcacaaatctcaaatccttctttgagatcacttttgattggaatgggaaatttccacatat----tcattgaggctcttagcaagag 3286199  T
Q  1156 tttatcacaggttc 1169  Q
      ||||||||||||    
T  3286198 catatcacaggttc 3286185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 2e-24; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 982 - 1169
Target Start/End: Complemental strand, 6905680 - 6905497
Alignment:
Q  982 tcagagatgcaactaaagcaagaattaagaaggtttcttcgtggtctatgtgatgcagatcttaatgaattcggaacatcacatgcatcagaaatgtcga 1081  Q
    |||| ||| |||||||  ||| |||||| ||| ||||||  |||||||| || |||| |||||| |||||  | |||||||||||||||| |||| |||     
T  6905680 tcagtgattcaactaattcaaaaattaacaagttttcttgatggtctatatggtgcaaatcttactgaatcggaaacatcacatgcatcaaaaatctcgg 6905581  T
Q  1082 atcttttcttgagatctcttgtgattggaatgggaagttgccacatatatagtcattgatactcttggcaagagtttatcacaggttc 1169  Q
    || ||| ||||| ||||||| |||||  ||||||||||||||||    |||||| | ||||||||||||||||| |||||||||||||    
T  6905580 atatttccttgaaatctcttttgattacaatgggaagttgccac----atagtcgtcgatactcttggcaagagcttatcacaggttc 6905497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1060 - 1168
Target Start/End: Complemental strand, 32410867 - 32410763
Alignment:
Q  1060 tcacatgcatcagaaatgtcgaatcttttcttgagatctcttgtgattggaatgggaagttgccacatatatagtcattgatactcttggcaagagttta 1159  Q
    |||||||||||| || | || |||| ||  ||||| || ||| ||||| ||||||||||||||||||||    || ||||||||||||||||||||  ||    
T  32410867 tcacatgcatcacaattctcaaatcattctttgaggtcgcttttgattagaatgggaagttgccacata----gttattgatactcttggcaagagcata 32410772  T
Q  1160 tcacaggtt 1168  Q
    |||||||||    
T  32410771 tcacaggtt 32410763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 158
Target Start/End: Original strand, 20798780 - 20798815
Alignment:
Q  123 ctgcaacaaattatgatgtaagctccaccacttggg 158  Q
    |||||||||||||||||||| |||||||||||||||    
T  20798780 ctgcaacaaattatgatgtaggctccaccacttggg 20798815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 158
Target Start/End: Complemental strand, 9450831 - 9450789
Alignment:
Q  116 gcccctactgcaacaaattatgatgtaagctccaccacttggg 158  Q
    ||||| || |||||||||||||||||| |||||||||||||||    
T  9450831 gcccccacagcaacaaattatgatgtaggctccaccacttggg 9450789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 158
Target Start/End: Complemental strand, 17724680 - 17724638
Alignment:
Q  116 gcccctactgcaacaaattatgatgtaagctccaccacttggg 158  Q
    ||||| || |||||||||||||||||| |||||||||||||||    
T  17724680 gcccccacagcaacaaattatgatgtaggctccaccacttggg 17724638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 158
Target Start/End: Complemental strand, 19025909 - 19025867
Alignment:
Q  116 gcccctactgcaacaaattatgatgtaagctccaccacttggg 158  Q
    ||||| || |||||||||||||||||| |||||||||||||||    
T  19025909 gcccccacagcaacaaattatgatgtaggctccaccacttggg 19025867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 158
Target Start/End: Complemental strand, 26640847 - 26640805
Alignment:
Q  116 gcccctactgcaacaaattatgatgtaagctccaccacttggg 158  Q
    ||||| ||||||||||||||||||||| | |||||||||||||    
T  26640847 gcccccactgcaacaaattatgatgtaggttccaccacttggg 26640805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 158
Target Start/End: Original strand, 28838401 - 28838443
Alignment:
Q  116 gcccctactgcaacaaattatgatgtaagctccaccacttggg 158  Q
    ||||| || |||||||||||||||||| |||||||||||||||    
T  28838401 gcccccacagcaacaaattatgatgtaggctccaccacttggg 28838443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 1e-22; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 162 - 304
Target Start/End: Original strand, 9211459 - 9211606
Alignment:
Q  162 gtgcaatggaggtcacacgcctagacgatgggccttcttgatcaca-----acaccttccaggtaagtatgttgcaatgtgtcacacacttctattttat 256  Q
    |||||||| |||||||  |||||| | |||||||||| |||||||      || || |||||||||||||||| |||||| ||||||| |||| ||||||    
T  9211459 gtgcaatgaaggtcacttgcctaggccatgggccttcctgatcacccattgaccccatccaggtaagtatgttacaatgtatcacacaattctgttttat 9211558  T
Q  257 aactcatgctccacattattcactacaaatcttccgatgtgggactta 304  Q
    ||||||||||||| |  |||||||| ||| ||||||||||||||||||    
T  9211559 aactcatgctccataacattcactataaaacttccgatgtgggactta 9211606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 162 - 304
Target Start/End: Complemental strand, 9370026 - 9369879
Alignment:
Q  162 gtgcaatggaggtcacacgcctagacgatgggccttcttgatcaca-----acaccttccaggtaagtatgttgcaatgtgtcacacacttctattttat 256  Q
    |||||||| |||||||  |||||| | ||||||||| ||||||||      || || ||||||||||||||||||||||  ||||||| |||| ||||||    
T  9370026 gtgcaatgaaggtcacttgcctaggccatgggcctttttgatcacccattgaccccatccaggtaagtatgttgcaatgaatcacacaattctcttttat 9369927  T
Q  257 aactcatgctccacattattcactacaaatcttccgatgtgggactta 304  Q
    ||||||||||||| |  |||||||| ||| ||||||||||||||||||    
T  9369926 aactcatgctccataacattcactataaaacttccgatgtgggactta 9369879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 982 - 1168
Target Start/End: Original strand, 15803262 - 15803444
Alignment:
Q  982 tcagagatgcaactaaagcaagaattaagaaggtttcttcgtggtctatgtgatgcagatcttaatgaattcggaacatcacatgcatcagaaatgtcga 1081  Q
    |||||||| ||||| || |||||||| ||||| ||||||  |  ||||| |||||||| ||||| |||| | ||||||||||| |||| | |||| |||     
T  15803262 tcagagattcaactgaaacaagaattcagaagatttcttgataatctatatgatgcaggtcttactgaagtgggaacatcacaggcattacaaatttcgg 15803361  T
Q  1082 atcttttcttgagatctcttgtgattggaatgggaagttgccacatatatagtcattgatactcttggcaagagtttatcacaggtt 1168  Q
    |||||||| ||||||| ||| || |||| || |||||||| |||||     |||||  |||||||||||||||| ||||||| ||||    
T  15803362 atcttttcatgagatcccttttgtttggtatcggaagttgtcacatt----gtcatcaatactcttggcaagagcttatcacgggtt 15803444  T

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Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 1081 - 1168
Target Start/End: Original strand, 20839079 - 20839162
Alignment:
Q  1081 aatcttttcttgagatctcttgtgattggaatgggaagttgccacatatatagtcattgatactcttggcaagagtttatcacaggtt 1168  Q
    ||||||||||||| ||| |||||||||||||||||||||| ||    | |||||||  ||||||||||||||||| ||| ||||||||    
T  20839079 aatcttttcttgaaatcacttgtgattggaatgggaagttccc----aaatagtcacagatactcttggcaagagcttagcacaggtt 20839162  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 158
Target Start/End: Original strand, 19242401 - 19242436
Alignment:
Q  123 ctgcaacaaattatgatgtaagctccaccacttggg 158  Q
    |||||||||||||||||||| |||||||||||||||    
T  19242401 ctgcaacaaattatgatgtaggctccaccacttggg 19242436  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1081 - 1169
Target Start/End: Original strand, 20812724 - 20812808
Alignment:
Q  1081 aatcttttcttgagatctcttgtgattggaatgggaagttgccacatatatagtcattgatactcttggcaagagtttatcacaggttc 1169  Q
    ||||||| ||||| ||  |||||||||||||||||||||| ||    | |||||||  ||||||||||||||||| ||| |||||||||    
T  20812724 aatctttccttgaaattacttgtgattggaatgggaagttccc----aaatagtcacagatactcttggcaagagcttagcacaggttc 20812808  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 158
Target Start/End: Original strand, 9211389 - 9211431
Alignment:
Q  116 gcccctactgcaacaaattatgatgtaagctccaccacttggg 158  Q
    ||||| || |||||||||||||||||| |||||||||||||||    
T  9211389 gcccccacagcaacaaattatgatgtaggctccaccacttggg 9211431  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 158
Target Start/End: Complemental strand, 12560260 - 12560227
Alignment:
Q  125 gcaacaaattatgatgtaagctccaccacttggg 158  Q
    |||||||||||||||||| |||||||||||||||    
T  12560260 gcaacaaattatgatgtaggctccaccacttggg 12560227  T

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Target: scaffold0468 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1065 - 1128
Target Start/End: Complemental strand, 5937 - 5874
Alignment:
Q  1065 tgcatcagaaatgtcgaatcttttcttgagatctcttgtgattggaatgggaagttgccacata 1128  Q
    ||||||| |||| ||| |||||| ||||| ||||||| |||||  |||||||||||||||||||    
T  5937 tgcatcacaaatctcggatctttccttgaaatctcttttgattacaatgggaagttgccacata 5874  T

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Target: chr7 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 158
Target Start/End: Original strand, 19545424 - 19545466
Alignment:
Q  116 gcccctactgcaacaaattatgatgtaagctccaccacttggg 158  Q
    ||||| || |||||||||||||||||| |||||||||||||||    
T  19545424 gcccccacagcaacaaattatgatgtaggctccaccacttggg 19545466  T

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Target: chr1 (Bit Score: 31; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 158
Target Start/End: Complemental strand, 1466904 - 1466862
Alignment:
Q  116 gcccctactgcaacaaattatgatgtaagctccaccacttggg 158  Q
    ||||| || |||||||||||||||||| |||||||||||||||    
T  1466904 gcccccacagcaacaaattatgatgtaggctccaccacttggg 1466862  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 158
Target Start/End: Complemental strand, 35923367 - 35923325
Alignment:
Q  116 gcccctactgcaacaaattatgatgtaagctccaccacttggg 158  Q
    ||||| || |||||||||||||||||| |||||||||||||||    
T  35923367 gcccccacagcaacaaattatgatgtaggctccaccacttggg 35923325  T

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