View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20758_low_10 (Length: 503)
Name: NF20758_low_10
Description: NF20758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20758_low_10 |
 | |
|
| [»] scaffold0003 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 246 - 490
Target Start/End: Original strand, 20416004 - 20416248
Alignment:
| Q |
246 |
cgcattttatttcatgccatgttctggattgtatgcatttttatttcatgataccttgggaaggattgctcgggcgtctcatccaggtcgcactgatgca |
345 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
20416004 |
cgcattttatttcatgccatgttctggattgtatgcatttttatttcatgataccttgggaaggattgcccgggcgtctcatccaggtcgcactgatgca |
20416103 |
T |
|
| Q |
346 |
ttttatttcatgtggcgccgagcttgtgtagtccgctccaatgcattttgtttcatgcggcggcaagtgtgagttcctggcgccttatcgcatcgatgca |
445 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
20416104 |
ttttatttcatgtggcgccgagcttgtgtagtccgctccaatgcattttgtttcatgcggcggcaagtgtgagttcctggcgccttatcgcgtcgatgca |
20416203 |
T |
|
| Q |
446 |
ttttgtttcatgcagcgcccggttccttttgttccgcattgatga |
490 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
20416204 |
ttttgtttcatgcagcacctggttccttttgttccgcattgatga |
20416248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 18 - 166
Target Start/End: Original strand, 20415745 - 20415893
Alignment:
| Q |
18 |
catttgactagcaggctgaactcgctgttgttaagggtccccatgtaatcactcattatgtgattccaccaaaattgtttgcattactttctatgtgatt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20415745 |
catttgactagcaggctgaactcgctgttgttaagggtccccatgtaatcactcattatgtgattccaccaaaattgtttgcattactttctatgtgatt |
20415844 |
T |
|
| Q |
118 |
tgcgatgtggtggcccctcttgtaattcatttgaatgtttgaatgtaaa |
166 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20415845 |
tccgatgtggtggcccctcttgtaattcatttgaatgtttgaatgtaaa |
20415893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 249 - 357
Target Start/End: Original strand, 12517425 - 12517533
Alignment:
| Q |
249 |
attttatttcatgccatgttctggattgtatgcatttttatttcatgataccttgggaaggattgctcgggcgtctcatccaggtcgcactgatgcattt |
348 |
Q |
| |
|
|||||||||||||||| ||| | ||| ||||||||||||||||||| ||| || || |||||||| ||||| | || |||||| ||| ||||||||||| |
|
|
| T |
12517425 |
attttatttcatgccacgtttagtattatatgcatttttatttcatgctacgttaggcaggattgcccgggcatttcgtccaggccgcgctgatgcattt |
12517524 |
T |
|
| Q |
349 |
tatttcatg |
357 |
Q |
| |
|
|||||||| |
|
|
| T |
12517525 |
aatttcatg |
12517533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 103; Significance: 5e-51; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 246 - 476
Target Start/End: Complemental strand, 14921735 - 14921505
Alignment:
| Q |
246 |
cgcattttatttcatgccatgttctggattgtatgcatttttatttcatgataccttgggaaggattgctcgggcgtctcatccaggtcgcactgatgca |
345 |
Q |
| |
|
||||||||||||||||| | ||| ||||||||||||||||| |||||| ||||| ||||||||||||||||||| || || || ||||||| ||||||| |
|
|
| T |
14921735 |
cgcattttatttcatgctacgttttggattgtatgcattttgatttcaagatacattgggaaggattgctcgggtgtttcgtctgggtcgcattgatgca |
14921636 |
T |
|
| Q |
346 |
ttttatttcatgtggcgccgagcttgtgtagtccgctccaatgcattttgtttcatgcggcggcaagtgtgagttcctggcgccttatcgcatcgatgca |
445 |
Q |
| |
|
||||||||||| ||||||| |||| | | || ||| || |||||||||||||||||| || |||||| | ||||||||||||||||| | |||||| |
|
|
| T |
14921635 |
ttttatttcatctggcgcccagctcgctttgtacgccccgatgcattttgtttcatgcactggtaagtgtaaattcctggcgccttatcgtgttgatgca |
14921536 |
T |
|
| Q |
446 |
ttttgtttcatgcagcgcccggttccttttg |
476 |
Q |
| |
|
||||||||||||| ||||| ||||||||||| |
|
|
| T |
14921535 |
ttttgtttcatgcggcgcctggttccttttg |
14921505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 95; Significance: 3e-46; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 246 - 476
Target Start/End: Original strand, 18801442 - 18801671
Alignment:
| Q |
246 |
cgcattttatttcatgccatgttctggattgtatgcatttttatttcatgataccttgggaaggattgctcgggcgtctcatccaggtcgcactgatgca |
345 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||| |||||| ||||||||||| |||| ||||||| | | ||| ||| ||| || |||||||||||| |
|
|
| T |
18801442 |
cgcattttatttcatgccatgttttggagtgtatacattttg-tttcatgatacgttggaaaggatttcccaggcatcttgtccgggacgcactgatgca |
18801540 |
T |
|
| Q |
346 |
ttttatttcatgtggcgccgagcttgtgtagtccgctccaatgcattttgtttcatgcggcggcaagtgtgagttcctggcgccttatcgcatcgatgca |
445 |
Q |
| |
|
||||||||| || | ||| |||| ||||||||| ||||||||||||||||||||||| ||||||||||| ||||| |||||||||||| | |||||| |
|
|
| T |
18801541 |
ttttatttcttgcagtgcccagctcgtgtagtccactccaatgcattttgtttcatgcactggcaagtgtgatttcctagcgccttatcgcgttgatgca |
18801640 |
T |
|
| Q |
446 |
ttttgtttcatgcagcgcccggttccttttg |
476 |
Q |
| |
|
||||||||||||| ||| | |||||| |||| |
|
|
| T |
18801641 |
ttttgtttcatgcggcgactggttccctttg |
18801671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 92; Significance: 2e-44; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 246 - 413
Target Start/End: Original strand, 25093559 - 25093726
Alignment:
| Q |
246 |
cgcattttatttcatgccatgttctggattgtatgcatttttatttcatgataccttgggaaggattgctcgggcgtctcatccaggtcgcactgatgca |
345 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||||||||||||||||||| |||||||||||||| ||| ||||| || ||||||||||||||| |
|
|
| T |
25093559 |
cgcattttatttcatgccacattttggattgtatgcatttttatttcatgatacattgggaaggattgcccggttgtctcgtcagggtcgcactgatgca |
25093658 |
T |
|
| Q |
346 |
ttttatttcatgtggcgccgagcttgtgtagtccgctccaatgcattttgtttcatgcggcggcaagt |
413 |
Q |
| |
|
| ||||||||| |||| || || | || |||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
25093659 |
tattatttcatatggcacccagttcgtttagtcctctccaatgcattttgtttcatgcggcgacaagt |
25093726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 246 - 458
Target Start/End: Complemental strand, 13894901 - 13894690
Alignment:
| Q |
246 |
cgcattttatttcatgccatgttctggattgtatgcatttttatttcatgataccttgggaaggattgctcgggcgtctcatccaggtcgcactgatgca |
345 |
Q |
| |
|
||||||||||||||||||| || || ||||||||||||||||||||||| ||| ||||| |||||| | |||| ||||| |||||||||||||||| |
|
|
| T |
13894901 |
cgcattttatttcatgccacattttgtattgtatgcatttttatttcatgctacgttgggcaggattatccaagcgtttcatctaggtcgcactgatgca |
13894802 |
T |
|
| Q |
346 |
ttttatttcatgtggcgccgagcttgtgtagtccgctccaatgcattttgtttcatgcggcggcaagtgtgagttcctggcgccttatcgcatcgatgca |
445 |
Q |
| |
|
|||||||||||||| | | || |||| ||||| | ||| | ||||||||||||| ||||| ||| || ||| ||||||||||| | | |||||| |
|
|
| T |
13894801 |
ttttatttcatgtgtggtccagtttgtttagtctg-tccgaaacattttgtttcatatggcggtgggtgcgatctcccggcgccttatctcgttgatgca |
13894703 |
T |
|
| Q |
446 |
ttttgtttcatgc |
458 |
Q |
| |
|
||||||||||||| |
|
|
| T |
13894702 |
ttttgtttcatgc |
13894690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 341 - 469
Target Start/End: Original strand, 25093699 - 25093827
Alignment:
| Q |
341 |
atgcattttatttcatgtggcgccgagcttgtgtagtccgctccaatgcattttgtttcatgcggcggcaagtgtgagttcctggcgccttatcgcatcg |
440 |
Q |
| |
|
||||||||| ||||||| |||| | || |||| || |||| ||||||||||||| ||||||| ||||| || || || |||| |||||||||| | | | |
|
|
| T |
25093699 |
atgcattttgtttcatgcggcgacaagtttgtttaatccgttccaatgcattttatttcatgtggcgggaaacgtaagctccttgcgccttatcacgttg |
25093798 |
T |
|
| Q |
441 |
atgcattttgtttcatgcagcgcccggtt |
469 |
Q |
| |
|
||| |||||||||||||| ||||| |||| |
|
|
| T |
25093799 |
atgtattttgtttcatgcggcgcctggtt |
25093827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 129 - 179
Target Start/End: Original strand, 25093441 - 25093491
Alignment:
| Q |
129 |
ggcccctcttgtaattcatttgaatgtttgaatgtaaagaagcttgggagc |
179 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |||||| |||| |||| |
|
|
| T |
25093441 |
ggcccctcttgtaattgatttgaatgtttgaatgaaaagaaacttgagagc |
25093491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 386 - 435
Target Start/End: Complemental strand, 415912 - 415863
Alignment:
| Q |
386 |
atgcattttgtttcatgcggcggcaagtgtgagttcctggcgccttatcg |
435 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||| |||||| ||||||||| |
|
|
| T |
415912 |
atgcattttgcttcatgcggcgacaagtgtgagatcctggtgccttatcg |
415863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 134 - 170
Target Start/End: Original strand, 23630335 - 23630371
Alignment:
| Q |
134 |
ctcttgtaattcatttgaatgtttgaatgtaaagaag |
170 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
23630335 |
ctcttgtaattgatttgaatgtttgaatgaaaagaag |
23630371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University