View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20758_low_11 (Length: 478)
Name: NF20758_low_11
Description: NF20758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20758_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 172; Significance: 3e-92; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 19 - 227
Target Start/End: Original strand, 54197762 - 54197970
Alignment:
| Q |
19 |
tctccaatttaccaaatcaacgtatacctctaatttgtctattttggatttccggcttttattttattctcgagtgaatacagtgctactgcttactggt |
118 |
Q |
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| T |
54197762 |
tctccaatttaccaaatcaacgtatacctctaatttgtctattttggatttccggcttttattttattctcgagtgaatacagtactactgcttactggt |
54197861 |
T |
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| Q |
119 |
ccagtattgatacacatagtagttgttgaatttgtcaaattgaaatnnnnnnnnnnncaattaagagaagaacacacttttgaagtttgcacttttttgt |
218 |
Q |
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| T |
54197862 |
ccagtattgatacacatagtagttgttgaatttgtcaaattgaaataataaaaaaaacaattaagagaagaacacacttttgaagtttgcacttttttgt |
54197961 |
T |
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| Q |
219 |
agtattact |
227 |
Q |
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| T |
54197962 |
agtattact |
54197970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 252 - 460
Target Start/End: Complemental strand, 54197970 - 54197762
Alignment:
| Q |
252 |
agtaatactacaaaaaagtgcaaacttcaaaagtgtgttcttctcttaattgnnnnnnnnnnnatttcaatttgacaaattcaacaactactatgtgtat |
351 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
54197970 |
agtaatactacaaaaaagtgcaaacttcaaaagtgtgttcttctcttaattgttttttttattatttcaatttgacaaattcaacaactactatgtgtat |
54197871 |
T |
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| Q |
352 |
caatactggaccagtaagcagtagcactgtattcactcgagaataaaataaaagccggaaatccaaaatagacaaattagaggtatacgttgatttggta |
451 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54197870 |
caatactggaccagtaagcagtagtactgtattcactcgagaataaaataaaagccggaaatccaaaatagacaaattagaggtatacgttgatttggta |
54197771 |
T |
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| Q |
452 |
aattggaga |
460 |
Q |
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| T |
54197770 |
aattggaga |
54197762 |
T |
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