View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20758_low_12 (Length: 462)

Name: NF20758_low_12
Description: NF20758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20758_low_12
NF20758_low_12
[»] chr3 (3 HSPs)
chr3 (1-445)||(11438685-11439129)
chr3 (54-446)||(15461134-15461526)
chr3 (27-440)||(11317130-11317543)
[»] scaffold0071 (1 HSPs)
scaffold0071 (54-446)||(666-1058)
[»] chr8 (4 HSPs)
chr8 (27-422)||(27504841-27505236)
chr8 (36-440)||(27498688-27499092)
chr8 (38-424)||(27544292-27544678)
chr8 (83-427)||(27496478-27496822)


Alignment Details
Target: chr3 (Bit Score: 413; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 1 - 445
Target Start/End: Original strand, 11438685 - 11439129
Alignment:
Q  1 atatgtaagaagatgatatttgaattgaatttctcaaaatctaaaaattaaacccatgtttaaccaatttctcttcaattacagtgtttaactgctcaat 100  Q
    |||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  11438685 atatgtaacaagatgatatttgaattgaatttctccaaatctaaaaattaaatccatgtttaaccaatttctcttcaattacagtgtttaattgctcaat 11438784  T
Q  101 catttcagttgttagaagcttttctccatctccaacttggccacgacgaaaataagctttattttcaacaccaaatgacactttcccagtcttattaacc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  11438785 catttcagttgttagaagcttttctccatctccaacttggccacgacgaaaaaaagctttattttcaacaccaaatgacactttcccagtcttattaacc 11438884  T
Q  201 tccaagttgctaagcttctcaaaactacacaaatttaatataacatcaaccacccctttagattcttcatctttagtgaaaggacactccaaaaattcag 300  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11438885 tccaagttgctaagcttctcaaaactacacaaatttaatatatcatcaaccacccctttagattcttcatctttagtgaaaggacactccaaaaattcag 11438984  T
Q  301 caagctttttcaaatgaaaatcaggcttcattttcatttcttcaaatctcaaaatcataaccttgtttgatctttccaaactttccttccaataacctaa 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  11438985 caagctttttcaaatgaaaatcaggcttcattttcatttcttcaaatctcaaaaacataaccttgtttgatctttccaaactttccttccaataacctaa 11439084  T
Q  401 tacatgatcccaaaagggtccaaacaaagtcactcctctagtaaa 445  Q
    |||||| ||||||||||||||||||||||||||||||||||||||    
T  11439085 tacatgctcccaaaagggtccaaacaaagtcactcctctagtaaa 11439129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 54 - 446
Target Start/End: Complemental strand, 15461526 - 15461134
Alignment:
Q  54 ccatgtttaaccaatttctcttcaattacagtgtttaactgctcaatcatttcagttgttagaagcttttctccatctccaacttggccacgacgaaaat 153  Q
    ||||||||| |||| || | ||| ||||| || |||||| | |||||||||||| |||  |||||  |||  | ||||||||||| ||||| ||| ||      
T  15461526 ccatgtttacccaaattttgttctattactgtatttaaccgttcaatcatttcaattgagagaagagttttccaatctccaactttgccactacggaaga 15461427  T
Q  154 aagctttattttcaacaccaaatgacactttcccagtcttattaacctccaagttgctaagcttctcaaaactacacaaatttaatataacatcaaccac 253  Q
    |||||||||||||  | ||| | |  | ||| |||  |||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  15461426 aagctttattttcttccccagacggtaattttccaaacttatttacctccaagttgctcagcttctcaaaactacacaaatttaatatatcatcaaccac 15461327  T
Q  254 ccctttagattcttcatctttagtgaaaggacactccaaaaattcagcaagctttttcaaatgaaaatcaggcttcattttcatttcttcaaatctcaaa 353  Q
     |||||||||||||| ||||| | ||| |||||| ||||||| ||||||| || |||||||| ||||  |||||||||||||||||||||| ||||||||    
T  15461326 tcctttagattcttcttctttggagaatggacaccccaaaaactcagcaacctctttcaaataaaaacaaggcttcattttcatttcttcatatctcaaa 15461227  T
Q  354 atcataaccttgtttgatctttccaaactttccttccaataacctaatacatgatcccaaaagggtccaaacaaagtcactcctctagtaaat 446  Q
    | ||| ||||| | |   |||||||| ||||| ||||| || ||||||| ||| ||||||||||||||||||||| |||| ||||||| ||||    
T  15461226 aacatcaccttctcttgcctttccaagctttctttccagtatcctaataaatgttcccaaaagggtccaaacaaactcacacctctagaaaat 15461134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 27 - 440
Target Start/End: Original strand, 11317130 - 11317543
Alignment:
Q  27 gaatttctcaaaatctaaaaattaaacccatgtttaaccaatttctcttcaattacagtgtttaactgctcaatcatttcagttgttagaagcttttctc 126  Q
    |||||||| ||||||||||||   ||||||||||| || ||||||||||||   |  ||||||| |||||||| |||||||||||| ||| | ||||  |    
T  11317130 gaatttcttaaaatctaaaaacacaacccatgttttacaaatttctcttcagcgatggtgtttatctgctcaaccatttcagttgtgagatgatttttcc 11317229  T
Q  127 catctccaacttggccacgacgaaaataagctttattttcaacaccaaatgacactttcccagtcttattaacctccaagttgctaagcttctcaaaact 226  Q
     ||||||||  |  ||| |||| ||| ||||||||||||| | |  ||   |  |||||||  ||||||| |||||||| ||||| | ||||||||||||    
T  11317230 aatctccaatattaccaagacggaaaaaagctttattttccatattaagaaaacctttcccgatcttattgacctccaaattgctcaacttctcaaaact 11317329  T
Q  227 acacaaatttaatataacatcaaccacccctttagattcttcatctttagtgaaaggacactccaaaaattcagcaagctttttcaaatgaaaatcaggc 326  Q
    |||||||||||||||| |||||||||| |||||  ||||||| ||||| | ||| |||||||||||||| |||||||||| |||||||| ||||| |||     
T  11317330 acacaaatttaatatatcatcaaccacacctttgaattcttcttctttggagaatggacactccaaaaactcagcaagctctttcaaataaaaattaggt 11317429  T
Q  327 ttcattttcatttcttcaaatctcaaaatcataaccttgtttgatctttccaaactttccttccaataacctaatacatgatcccaaaagggtccaaaca 426  Q
    |||||||||||||||||| || |||||| ||| ||||| | ||  |||||||| |||| |||||||||  | |||||||| |||||||||||||||||      
T  11317430 ttcattttcatttcttcatatttcaaaaacatcaccttctctggcctttccaagcttttcttccaatataccaatacatgctcccaaaagggtccaaaag 11317529  T
Q  427 aagtcactcctcta 440  Q
    || |||||||||||    
T  11317530 aactcactcctcta 11317543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 133; Significance: 6e-69; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 54 - 446
Target Start/End: Original strand, 666 - 1058
Alignment:
Q  54 ccatgtttaaccaatttctcttcaattacagtgtttaactgctcaatcatttcagttgttagaagcttttctccatctccaacttggccacgacgaaaat 153  Q
    ||||||||| |||| || | ||| ||||| || |||||| | |||||||||||| |||  |||||  |||  | ||||||||||| ||||| ||| ||      
T  666 ccatgtttacccaaattttgttctattactgtatttaaccgttcaatcatttcaattgagagaagagttttccaatctccaactttgccactacggaaga 765  T
Q  154 aagctttattttcaacaccaaatgacactttcccagtcttattaacctccaagttgctaagcttctcaaaactacacaaatttaatataacatcaaccac 253  Q
    |||||||||||||  | ||| | |  | ||| |||  |||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  766 aagctttattttcttccccagacggtaattttccaaacttatttacctccaagttgctcagcttctcaaaactacacaaatttaatatatcatcaaccac 865  T
Q  254 ccctttagattcttcatctttagtgaaaggacactccaaaaattcagcaagctttttcaaatgaaaatcaggcttcattttcatttcttcaaatctcaaa 353  Q
     |||||||||||||| ||||| | ||| |||||| ||||||| ||||||| || |||||||| ||||  |||||||||||||||||||||| ||||||||    
T  866 tcctttagattcttcttctttggagaatggacaccccaaaaactcagcaacctctttcaaataaaaacaaggcttcattttcatttcttcatatctcaaa 965  T
Q  354 atcataaccttgtttgatctttccaaactttccttccaataacctaatacatgatcccaaaagggtccaaacaaagtcactcctctagtaaat 446  Q
    | ||| ||||| | |   |||||||| ||||| ||||| || ||||||| ||| ||||||||||||||||||||| |||| ||||||| ||||    
T  966 aacatcaccttctcttgcctttccaagctttctttccagtatcctaataaatgttcccaaaagggtccaaacaaactcacacctctagaaaat 1058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 129; Significance: 1e-66; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 27 - 422
Target Start/End: Complemental strand, 27505236 - 27504841
Alignment:
Q  27 gaatttctcaaaatctaaaaattaaacccatgtttaaccaatttctcttcaattacagtgtttaactgctcaatcatttcagttgttagaagcttttctc 126  Q
    ||||||||||||||||||||| | |||||||||||| | ||||||||||| |  ||  ||||||||||||||| ||||| |||||| ||||| ||||  |    
T  27505236 gaatttctcaaaatctaaaaactcaacccatgtttaccaaatttctcttcgacaactatgtttaactgctcaaccattttagttgtgagaagatttttcc 27505137  T
Q  127 catctccaacttggccacgacgaaaataagct-ttattttcaacaccaaatgacactttcccagtcttattaacctccaagttgctaagcttctcaaaac 225  Q
     ||||||||||| |||| |||| ||| ||| | || |||||||   |  | || | ||||||  ||||||| | ||||||||||||||||||||||||||    
T  27505136 aatctccaactttgccaagacggaaa-aagttcttgttttcaatttccgacgaaattttcccgttcttattgatctccaagttgctaagcttctcaaaac 27505038  T
Q  226 tacacaaatttaatataacatcaaccacccctttagattcttcatctttagtgaaaggacactccaaaaattcagcaagctttttcaaatgaaaatcagg 325  Q
    ||||||||| ||||||| |||||||||| || || |||||||| ||||  | ||| |||||| ||||||| | ||||| || |||||||  ||||| |||    
T  27505037 tacacaaatgtaatatatcatcaaccacaccattggattcttcttcttcggagaatggacaccccaaaaacttagcaatctctttcaaaacaaaattagg 27504938  T
Q  326 cttcattttcatttcttcaaatctcaaaatcataaccttgtttgatctttccaaactttccttccaataacctaatacatgatcccaaaagggtcca 422  Q
     |||||||||||||||||| || |||||| ||||||||| |  | ||||||||| ||||||||||| || |||||||||||||||||||| ||||||    
T  27504937 tttcattttcatttcttcatatttcaaaaacataaccttctccggtctttccaagctttccttccagtatcctaatacatgatcccaaaacggtcca 27504841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 36 - 440
Target Start/End: Original strand, 27498688 - 27499092
Alignment:
Q  36 aaaatctaaaaattaaacccatgtttaaccaatttctcttcaattacagtgtttaactgctcaatcatttcagttgttagaagcttttctccatctccaa 135  Q
    |||||||||||| | |||||||||||| ||||||| | |||  | | ||||||||| |||| ||||||||||| ||| ||||| ||||  | ||||||||    
T  27498688 aaaatctaaaaactcaacccatgtttacccaatttattttcggtgatagtgtttaattgcttaatcatttcagctgtgagaaggtttttccaatctccaa 27498787  T
Q  136 cttggccacgacgaaaataagctttattttcaacaccaaatgacactttcccagtcttattaacctccaagttgctaagcttctcaaaactacacaaatt 235  Q
    ||||||||||||||||| |||||||||||||||||||   ||  ||| |  | ||||| || |||||||||||||| |  ||||||||||||||||||||    
T  27498788 cttggccacgacgaaaaaaagctttattttcaacacctgttgctactcttacggtcttgttgacctccaagttgcttaagttctcaaaactacacaaatt 27498887  T
Q  236 taatataacatcaaccacccctttagattcttcatctttagtgaaaggacactccaaaaattcagcaagctttttcaaatgaaaatcaggcttcattttc 335  Q
    ||||||| |||| | ||  || || |||||||| || |||  ||| |||||  ||| ||| ||||||| ||||||||||| ||||  ||| |||||||||    
T  27498888 taatatatcatcgatcatgcccttggattcttcttcattaaagaatggacaacccagaaactcagcaatctttttcaaataaaaactaggtttcattttc 27498987  T
Q  336 atttcttcaaatctcaaaatcataaccttgtttgatctttccaaactttccttccaataacctaatacatgatcccaaaagggtccaaacaaagtcactc 435  Q
    |||||||||||| | | || ||| ||||| | ||  ||||||||  ||||||||||||| ||||||||||| ||||||||||||||| |  || ||||||    
T  27498988 atttcttcaaattttataaacatcaccttctctggcctttccaagttttccttccaatatcctaatacatgctcccaaaagggtccataagaactcactc 27499087  T
Q  436 ctcta 440  Q
    |||||    
T  27499088 ctcta 27499092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 38 - 424
Target Start/End: Complemental strand, 27544678 - 27544292
Alignment:
Q  38 aatctaaaaattaaacccatgtttaaccaatttctcttcaattacagtgtttaactgctcaatcatttcagttgttagaagcttttctccatctccaact 137  Q
    |||||||||  | ||||||||| || |||||||   |||| | | |||||| ||||||||||||||||||||||| ||||  ||||  | ||||||||||    
T  27544678 aatctaaaatctcaacccatgtgtagccaatttactttcagtgatagtgttcaactgctcaatcatttcagttgtgagaacatttttgcaatctccaact 27544579  T
Q  138 tggccacgacgaaaataagctttattttcaacaccaaatgacactttcccagtcttattaacctccaagttgctaagcttctcaaaactacacaaattta 237  Q
     ||||  | || ||| |   ||| ||||| | | |||| || | ||| || |||||||| |||||||||||||| || |||||||||||||| | |||||    
T  27544578 cggcctagccggaaaaagtatttgttttccatatcaaaagaaagttttcctgtcttattgacctccaagttgctcagtttctcaaaactacatagattta 27544479  T
Q  238 atataacatcaaccacccctttagattcttcatctttagtgaaaggacactccaaaaattcagcaagctttttcaaatgaaaatcaggcttcattttcat 337  Q
    ||||| |||||||||  ||||| |||||||| ||||| | ||| |||||  ||||||| | ||||| || |||||||| ||||  ||| |||||||||||    
T  27544478 atatatcatcaaccatacctttggattcttcttctttggagaatggacaacccaaaaaattagcaatctctttcaaataaaaactaggattcattttcat 27544379  T
Q  338 ttcttcaaatctcaaaatcataaccttgtttgatctttccaaactttccttccaataacctaatacatgatcccaaaagggtccaaa 424  Q
    ||||||| || |||||| ||| ||||| |  |  |||||||| |||||||||||||| || |||||||| |||||||| ||||||||    
T  27544378 ttcttcatatttcaaaaacatcaccttctccggcctttccaagctttccttccaatatcccaatacatgctcccaaaacggtccaaa 27544292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 83 - 427
Target Start/End: Original strand, 27496478 - 27496822
Alignment:
Q  83 agtgtttaactgctcaatcatttcagttgttagaagcttttctccatctccaacttggccacgacgaaaataagctttattttcaacaccaaatgacact 182  Q
    |||||||||| ||||||||||||| ||||| ||||| ||||  | |||||||||||| |||||| | ||| |||||||||||||| ||||| |||| | |    
T  27496478 agtgtttaacagctcaatcatttctgttgtgagaagatttttccaatctccaacttgtccacgatggaaaaaagctttattttcatcaccagatgatatt 27496577  T
Q  183 ttcccagtcttattaacctccaagttgctaagcttctcaaaactacacaaatttaatataacatcaaccacccctttagattcttcatctttagtgaaag 282  Q
     | |  |||||||  || ||||||||||  || ||||||||||||||||||||||||| | |||||||||  || || |||||||| ||  |||  ||      
T  27496578 cttcatgtcttatcgacttccaagttgcccagattctcaaaactacacaaatttaataaatcatcaaccatgccgttggattcttcttcaatagaaaatc 27496677  T
Q  283 gacactccaaaaattcagcaagctttttcaaatgaaaatcaggcttcattttcatttcttcaaatctcaaaatcataaccttgtttgatctttccaaact 382  Q
     |||  ||||||| ||||||| ||||||||||| ||||  |||||||||||||  ||||||| || |||||| ||| ||||| | ||   ||||||||||    
T  27496678 cacaacccaaaaactcagcaatctttttcaaataaaaactaggcttcattttcgcttcttcatatttcaaaaacatcaccttctctggcatttccaaact 27496777  T
Q  383 ttccttccaataacctaatacatgatcccaaaagggtccaaacaa 427  Q
    |||| | ||||| ||||||||||| ||||||||  ||||||||||    
T  27496778 ttccgttcaatatcctaatacatgctcccaaaacagtccaaacaa 27496822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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