View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20758_low_14 (Length: 444)

Name: NF20758_low_14
Description: NF20758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20758_low_14
NF20758_low_14
[»] chr6 (3 HSPs)
chr6 (11-433)||(33817092-33817514)
chr6 (137-191)||(22015253-22015307)
chr6 (134-170)||(1021127-1021163)
[»] chr5 (4 HSPs)
chr5 (125-191)||(14004322-14004388)
chr5 (125-225)||(39156656-39156756)
chr5 (157-203)||(11615299-11615345)
chr5 (125-190)||(10982333-10982398)
[»] chr4 (5 HSPs)
chr4 (125-225)||(51125846-51125946)
chr4 (135-186)||(35656476-35656527)
chr4 (137-191)||(10997345-10997399)
chr4 (134-224)||(32109833-32109922)
chr4 (125-186)||(17123222-17123283)
[»] chr2 (5 HSPs)
chr2 (122-168)||(42986095-42986141)
chr2 (137-191)||(44325361-44325415)
chr2 (137-170)||(2377913-2377946)
chr2 (127-184)||(6735371-6735428)
chr2 (127-168)||(36886015-36886056)
[»] chr7 (2 HSPs)
chr7 (125-169)||(44048954-44048998)
chr7 (135-170)||(4624515-4624550)
[»] chr8 (1 HSPs)
chr8 (126-185)||(10491148-10491207)
[»] chr1 (3 HSPs)
chr1 (136-191)||(15867620-15867675)
chr1 (127-170)||(34951808-34951851)
chr1 (125-166)||(15920245-15920286)
[»] scaffold0029 (1 HSPs)
scaffold0029 (137-191)||(53839-53893)
[»] scaffold1396 (1 HSPs)
scaffold1396 (125-166)||(1275-1316)


Alignment Details
Target: chr6 (Bit Score: 391; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 11 - 433
Target Start/End: Complemental strand, 33817514 - 33817092
Alignment:
Q  11 aagaaaaatggtggcaatggaatggtcaaagaaagtatgaacaacaaaactgctgctgccacaaagaacaacagaatgaatgaaaatctcatacggtatt 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33817514 aagaaaaatggtggcaatggaatggtcaaagaaagtatgaacaacaaaactgctgctgccacaaagaacaacagaatgaatgaaaatctcatacggtatt 33817415  T
Q  111 aaaaaatatttgacttttttacgctgtcaatcaatcataatcgtcagatcattaaaaatacatgactttaatcatatctatctgaaaagtcatatgaatg 210  Q
    ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  33817414 aaaaaatatttgatttttttacgctgtcaatcaatcataatcgttagatcattaaaaatacatgactttaatcatatctatctgaaaagtcatataaatg 33817315  T
Q  211 atggtttgtaattggatgacacagtaaaaagttttactatgacagcgcatcaaaattaatctacagataaaatgttacattgattatatgctaaccagtg 310  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |||||    
T  33817314 atggtttataattggatgacacggtaaaaagttttactatgacagcgcatcaaaattaatctagagttaaaatgttacattgattatatgctaaacagtg 33817215  T
Q  311 cctcgggcacattactattaagaaaattgagtctaactagtttttcatttgtttgcaatatagtgtgagaaagttgacaaatatgacagaacatttgtcc 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33817214 cctcgggcacattactattaagaaaattgagtctaactagtttttcatttgtttgcaatatagtgtgagaaagttgacaaatatgacagaacatttgtcc 33817115  T
Q  411 aaatctttactcaatggtgttgg 433  Q
    |||||||||||||||||||||||    
T  33817114 aaatctttactcaatggtgttgg 33817092  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 137 - 191
Target Start/End: Complemental strand, 22015307 - 22015253
Alignment:
Q  137 tcaatcaatcataatcgtcagatcattaaaaatacatgactttaatcatatctat 191  Q
    |||||||||||||||||| | ||||||||||||  | ||||||||||||||||||    
T  22015307 tcaatcaatcataatcgttatatcattaaaaatgtaagactttaatcatatctat 22015253  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 134 - 170
Target Start/End: Complemental strand, 1021163 - 1021127
Alignment:
Q  134 ctgtcaatcaatcataatcgtcagatcattaaaaata 170  Q
    |||||||| ||||||||| ||||||||||||||||||    
T  1021163 ctgtcaattaatcataattgtcagatcattaaaaata 1021127  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 125 - 191
Target Start/End: Original strand, 14004322 - 14004388
Alignment:
Q  125 ttttttacgctgtcaatcaatcataatcgtcagatcattaaaaatacatgactttaatcatatctat 191  Q
    |||| ||| ||||||||||||||||||||| |||||||| ||||||  |||||||||||||| ||||    
T  14004322 ttttatacactgtcaatcaatcataatcgtgagatcatttaaaataattgactttaatcataactat 14004388  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 125 - 225
Target Start/End: Complemental strand, 39156756 - 39156656
Alignment:
Q  125 ttttttacgctgtcaatcaatcataatcgtcagatcattaaaaatacatgactttaatcatatctatctgaaaagtcatatgaatgatggtttgtaattg 224  Q
    |||||||| ||||||||||||||||| | |  ||||| ||||||||  |||||| |||||||  || || ||||||||||  ||||||||||||| ||||    
T  39156756 ttttttactctgtcaatcaatcataaccattggatcaataaaaatatttgacttcaatcatacataccttaaaagtcatacaaatgatggtttgtgattg 39156657  T
Q  225 g 225  Q
    |    
T  39156656 g 39156656  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 157 - 203
Target Start/End: Original strand, 11615299 - 11615345
Alignment:
Q  157 gatcattaaaaatacatgactttaatcatatctatctgaaaagtcat 203  Q
    ||||||||||||||  |||||||||||||||||| || |||||||||    
T  11615299 gatcattaaaaatatttgactttaatcatatctaactcaaaagtcat 11615345  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 190
Target Start/End: Complemental strand, 10982398 - 10982333
Alignment:
Q  125 ttttttacgctgtcaatcaatcataatcgtcagatcattaaaaatacatgactttaatcatatcta 190  Q
    |||||||| ||||| |||||| ||||||  ||||||| ||||||||  | ||||||||||||||||    
T  10982398 ttttttacactgtctatcaattataatcagcagatcactaaaaatattttactttaatcatatcta 10982333  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 125 - 225
Target Start/End: Original strand, 51125846 - 51125946
Alignment:
Q  125 ttttttacgctgtcaatcaatcataatcgtcagatcattaaaaatacatgactttaatcatatctatctgaaaagtcatatgaatgatggtttgtaattg 224  Q
    |||||||| ||  |||||||||||||||| || ||||||| |||||  ||||||||||||||| || || |||  |||||  |||||||||||||| |||    
T  51125846 ttttttacactaccaatcaatcataatcgccaaatcattagaaatatttgactttaatcatatatacctaaaacatcatacaaatgatggtttgtatttg 51125945  T
Q  225 g 225  Q
    |    
T  51125946 g 51125946  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 135 - 186
Target Start/End: Complemental strand, 35656527 - 35656476
Alignment:
Q  135 tgtcaatcaatcataatcgtcagatcattaaaaatacatgactttaatcata 186  Q
    |||| ||||||||||||||||| |||||||||||||  |||| |||||||||    
T  35656527 tgtcgatcaatcataatcgtcacatcattaaaaatatttgacattaatcata 35656476  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 191
Target Start/End: Complemental strand, 10997399 - 10997345
Alignment:
Q  137 tcaatcaatcataatcgtcagatcattaaaaatacatgactttaatcatatctat 191  Q
    |||||||||||||||||| | |||||||||||   | ||||||||||||||||||    
T  10997399 tcaatcaatcataatcgttatatcattaaaaacgtaagactttaatcatatctat 10997345  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 224
Target Start/End: Original strand, 32109833 - 32109922
Alignment:
Q  134 ctgtcaatcaatcataatcgtcagatcattaaaaatacatgactttaatcatatctatctgaaaagtcatatgaatgatggtttgtaattg 224  Q
    ||||||||||||||||| |||  | ||||||||||||  | |||||||| ||||||| |  ||||||||||  ||||||||||||| ||||    
T  32109833 ctgtcaatcaatcataaccgtttggtcattaaaaatatttaactttaattatatcta-cataaaagtcatacaaatgatggtttgtgattg 32109922  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 186
Target Start/End: Complemental strand, 17123283 - 17123222
Alignment:
Q  125 ttttttacgctgtcaatcaatcataatcgtcagatcattaaaaatacatgactttaatcata 186  Q
    |||||||||||| ||||||||||||||| ||  |||||||||||    ||||||||||||||    
T  17123283 ttttttacgctgccaatcaatcataatcatcctatcattaaaaaagtttgactttaatcata 17123222  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 122 - 168
Target Start/End: Complemental strand, 42986141 - 42986095
Alignment:
Q  122 gacttttttacgctgtcaatcaatcataatcgtcagatcattaaaaa 168  Q
    ||||||||| | |||||| ||||||||||||||||||||||||||||    
T  42986141 gacttttttccactgtcagtcaatcataatcgtcagatcattaaaaa 42986095  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 137 - 191
Target Start/End: Complemental strand, 44325415 - 44325361
Alignment:
Q  137 tcaatcaatcataatcgtcagatcattaaaaatacatgactttaatcatatctat 191  Q
    |||||||||||||||||| | ||||||||||||  | ||||||||||||||||||    
T  44325415 tcaatcaatcataatcgttatatcattaaaaatgtaagactttaatcatatctat 44325361  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 170
Target Start/End: Complemental strand, 2377946 - 2377913
Alignment:
Q  137 tcaatcaatcataatcgtcagatcattaaaaata 170  Q
    |||||||||||||||||| |||||||||||||||    
T  2377946 tcaatcaatcataatcgtgagatcattaaaaata 2377913  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 184
Target Start/End: Complemental strand, 6735428 - 6735371
Alignment:
Q  127 ttttacgctgtcaatcaatcataatcgtcagatcattaaaaatacatgactttaatca 184  Q
    |||||| ||||||| ||||||||||| ||| |||||||||||| | | ||||||||||    
T  6735428 ttttacactgtcaaccaatcataatcatcatatcattaaaaatgccttactttaatca 6735371  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 168
Target Start/End: Original strand, 36886015 - 36886056
Alignment:
Q  127 ttttacgctgtcaatcaatcataatcgtcagatcattaaaaa 168  Q
    |||||| || ||||||||||||||||||||| ||||||||||    
T  36886015 ttttacactatcaatcaatcataatcgtcaggtcattaaaaa 36886056  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 125 - 169
Target Start/End: Original strand, 44048954 - 44048998
Alignment:
Q  125 ttttttacgctgtcaatcaatcataatcgtcagatcattaaaaat 169  Q
    ||||||||| |||||||||||||| |||||||||||| |||||||    
T  44048954 ttttttacgttgtcaatcaatcattatcgtcagatcaataaaaat 44048998  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 135 - 170
Target Start/End: Complemental strand, 4624550 - 4624515
Alignment:
Q  135 tgtcaatcaatcataatcgtcagatcattaaaaata 170  Q
    |||||||||||||||||||||||||||| |||||||    
T  4624550 tgtcaatcaatcataatcgtcagatcatcaaaaata 4624515  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 126 - 185
Target Start/End: Complemental strand, 10491207 - 10491148
Alignment:
Q  126 tttttacgctgtcaatcaatcataatcgtcagatcattaaaaatacatgactttaatcat 185  Q
    ||||||| ||| ||||||||||||| | ||||||||||||||| |  |||||||||||||    
T  10491207 tttttacactggcaatcaatcataaccatcagatcattaaaaaaaattgactttaatcat 10491148  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 15867675 - 15867620
Alignment:
Q  136 gtcaatcaatcataatcgtcagatcattaaaaatacatgactttaatcatatctat 191  Q
    ||||||||||||||||||||| |||||||||| |   |||||||||||||| ||||    
T  15867675 gtcaatcaatcataatcgtcatatcattaaaactgtttgactttaatcataactat 15867620  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 170
Target Start/End: Complemental strand, 34951851 - 34951808
Alignment:
Q  127 ttttacgctgtcaatcaatcataatcgtcagatcattaaaaata 170  Q
    |||||| |||||||||||||||| | ||||||||||||||||||    
T  34951851 ttttacactgtcaatcaatcatattggtcagatcattaaaaata 34951808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 166
Target Start/End: Complemental strand, 15920286 - 15920245
Alignment:
Q  125 ttttttacgctgtcaatcaatcataatcgtcagatcattaaa 166  Q
    |||||||| | ||||||||||||||||||| |||||||||||    
T  15920286 ttttttacaccgtcaatcaatcataatcgtgagatcattaaa 15920245  T

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Target: scaffold0029 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 191
Target Start/End: Original strand, 53839 - 53893
Alignment:
Q  137 tcaatcaatcataatcgtcagatcattaaaaatacatgactttaatcatatctat 191  Q
    |||||||||||||||||| | |||||||||||   | ||||||||||||||||||    
T  53839 tcaatcaatcataatcgttatatcattaaaaacgtaagactttaatcatatctat 53893  T

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Target: scaffold1396 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1396
Description:

Target: scaffold1396; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 166
Target Start/End: Original strand, 1275 - 1316
Alignment:
Q  125 ttttttacgctgtcaatcaatcataatcgtcagatcattaaa 166  Q
    ||||||||| ||||||||||||||||| |||| |||||||||    
T  1275 ttttttacgttgtcaatcaatcataatggtcatatcattaaa 1316  T

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