View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20758_low_16 (Length: 437)
Name: NF20758_low_16
Description: NF20758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20758_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 59 - 425
Target Start/End: Original strand, 45024667 - 45025031
Alignment:
| Q |
59 |
ttttctttgcatgtaatgtaacatactagtaagcctcagaaaattaaaacatactctcatatcatgtgctggaatgaattataataagaaaattgtaact |
158 |
Q |
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| T |
45024667 |
ttttctttgcatgtaatttaacatacttgtaagcctcagaaaattaaaacatactctctaatcatgtgctggactgaattataataataaaattgtaact |
45024766 |
T |
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| Q |
159 |
cgnnnnnnnnnaatatgcacaattcagtccaaatttgtttatatgccaattcagagggaggattatttagtaatcattgcatttatattatatgcataaa |
258 |
Q |
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| T |
45024767 |
cgttttttt--aatatgcacaattcagtccaaatttgtttatatgccaattcagagggaggattatatagtaatcattgcatttatattatatgcataaa |
45024864 |
T |
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| Q |
259 |
tgttttgaccagatgggaattactagtgcactggacacattttgtggtcaatcaaatggagcagaacagtaccatatgcttggaatacacatgcaaagag |
358 |
Q |
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| T |
45024865 |
tgttttgatcagatgggaattactagtgcactggacacattttgtggtcaatcaaatggagcagaacagtaccatatgcttggaatacacatgcaaagag |
45024964 |
T |
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| Q |
359 |
ccatgattgtggtttcaattgtgagtgtattccttgccatcatatgggcaaatacaaaacaaatttt |
425 |
Q |
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| T |
45024965 |
ccatgattgtggtttcaattgtgagtgtattccttgccatcatatgggcaaatacaaaacaaatttt |
45025031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 284 - 362
Target Start/End: Complemental strand, 30471858 - 30471780
Alignment:
| Q |
284 |
gtgcactggacacattttgtggtcaatcaaatggagcagaacagtaccatatgcttggaatacacatgcaaagagccat |
362 |
Q |
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| T |
30471858 |
gtgcactagaaacattttgtggtcaatcatatggagcacaaaaataccatatggtgggaatacacttgcagagagccat |
30471780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 283 - 345
Target Start/End: Complemental strand, 30437753 - 30437691
Alignment:
| Q |
283 |
agtgcactggacacattttgtggtcaatcaaatggagcagaacagtaccatatgcttggaata |
345 |
Q |
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| T |
30437753 |
agtgcactagacacattttgtggtcaagcatatggagctcaacagtatcatatggttggaata |
30437691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 363
Target Start/End: Complemental strand, 30381453 - 30381373
Alignment:
| Q |
283 |
agtgcactggacacattttgtggtcaatcaaatggagcagaacagtaccatatgcttggaatacacatgcaaagagccatg |
363 |
Q |
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| T |
30381453 |
agtgcactagacacattttgtggtcaagcatatggagcaaagcaatatcatatggttggcatatacacacaaagagccatg |
30381373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 363
Target Start/End: Complemental strand, 30502812 - 30502739
Alignment:
| Q |
290 |
tggacacattttgtggtcaatcaaatggagcagaacagtaccatatgcttggaatacacatgcaaagagccatg |
363 |
Q |
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| T |
30502812 |
tggacacattatgtggccagtcatatggcgcaaagcagtaccgcatgctaggcatacacatgcaaagagccatg |
30502739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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