View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20758_low_17 (Length: 414)
Name: NF20758_low_17
Description: NF20758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20758_low_17 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 13 - 398
Target Start/End: Complemental strand, 33501997 - 33501612
Alignment:
| Q |
13 |
atcatcaggctacatgcagcaagagaaatgctaagaatatctcctcctgtcccaacaaagttcttaatattttccttatataatgaaataccgaagggtg |
112 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
33501997 |
atcataaggctacatgcagcaagagaaatgctaaaaatatctcctcctgtcccaacaaaattcttaatattttccttatataatgaaataccaaagggtg |
33501898 |
T |
|
| Q |
113 |
attatgtgcttgaagagcttccagatagcctcagaaaggttgattgtggacagccatgtagtgcaagttctatcctcaagagtatgaaccttgccgggcc |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
33501897 |
attatgtgcttgaagagcttccagatagcctcaaaaaggttgattgtggacagccatgtagtgcaagttctatcctcaagagtatgaaccttgccggacc |
33501798 |
T |
|
| Q |
213 |
agtagtttccaattcgatggtagaagaggttagtcaagtagacaaaagtgtcgatgttaaagatgatagtccctcgttggagtctgctattaaacaatct |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33501797 |
agtagtttccaattcgatggtagaagaggttagtcaagtagacaaaagtgtcgatgttaaagatgatagtccctcgttggagtctgctattaaacaatct |
33501698 |
T |
|
| Q |
313 |
agggaggaagaaaagaaatttctcgttgctaaagctaccaccgaagaattaaaggaggaaggagtcaccgacagtgttctggtttt |
398 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33501697 |
agagaggaagaaaagaaatttctcgttgctaaagctaccaccgaagaattaaaggaggaaggagtcaccgacagtgttctggtttt |
33501612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 19 - 352
Target Start/End: Complemental strand, 1218159 - 1217835
Alignment:
| Q |
19 |
aggctacatgcagcaagagaaatgctaagaatatctcctcctgtcccaacaaagttcttaatattttccttatataatgaaataccgaagggtgattatg |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||| ||||| |
|
|
| T |
1218159 |
aggctacatgcagcaagagaaatgctaagaatatcacctcctgtcccaacaaaattcttaatattttccttatataataaaataccaaagggtggttatg |
1218060 |
T |
|
| Q |
119 |
tgcttgaagagcttccagatagcctcagaaaggttgattgtggacagccatgtagtgcaagttctatcctcaagagtatgaaccttgccgggccagtagt |
218 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |||||||||| ||| ||||||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
1218059 |
tgcttgaagagcttccagatagcctcacaaaggttaattgtggacaacca---------agttctatcctcaagagtatgtaccttgccggcccagtagt |
1217969 |
T |
|
| Q |
219 |
ttccaattcgatggtagaagaggttagtcaagtagacaaaagtgtcgatgttaaagatgatagtccctcgttggagtctgctattaaacaatctagggag |
318 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1217968 |
ttccaattcgatggtagaagaggtgagtcaagtagacaaaagtgtcaatgttagagatgatagtccctcgttggagtctgctattaaacaatctagggag |
1217869 |
T |
|
| Q |
319 |
gaagaaaagaaatttctcgttgctaaagctacca |
352 |
Q |
| |
|
|||||||||||| ||||| || |||||||||||| |
|
|
| T |
1217868 |
gaagaaaagaaagttctcattactaaagctacca |
1217835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University